RNA id: XM_043236111.1


Basic Information

Item Value
RNA id XM_043236111.1
length 1891
RNA type mRNA
GC content 0.52
exon number 7
gene id tacr3l
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 31561981 ~ 31572621 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GATATCGCAGTGAGCTTATCATGGCTGGTCCTCAGAGCGGCTCAAACGTAACGCGTAATTTCACAAACCAGTTCGTGCAGCCGCCGTGGCGCGTCGCGATTTGGTCGGTGGCGTACAGCTCCGTGCTGGCGGTCGCCGTGTTCGGAAACCTCATCGTTATTTGGATCATTTTGGCCCATAAACGGATGCGCACGGTAACCAACTATTTCTTGCTCAACCTGGCGTTCTCCGACGCCTCGATGGCCGCGTTCAACACGCTCGTCAACTTCATTTACGCCACGCACGGAGAGTGGTACTTTGGAGAGGTTTACTGCAAGTTCCACAACTTCTTTCCGGTGACCGCCGTGTTTGCCAGCATTTACTCCATGACTGCGATTGCAGTCGACAGGTACATGGCTATAATTCACCCTGAAGCCCGTCTGTCAGCTACCGCTACCAAAGTGGTGATTGTCTGTATTTGGGCTCTGGCGGTGATTCTGGCTTTCCCGCTGTGTTTCTATTCCACCACGAGAACTATGCCTCGCCGAACCGTCTGCTACGTCGCCTGGCCGAGACCTTCTGAGGATTCGTTCATGTATCATATCATAGTAACCGTGCTGGTGTACATGCTGCCCCTAGTGGTCATGGGCATCACCTACACTATCGTCGGAGTCACACTTTGGGGAGGAGAGATTCCTGGAGATTCGTCAGACAATTACGTCGGACAGCTGCGAGCCAAGAGGAAGGTGGTGAAGATGATGATCGTGGTGGTGGTGACCTTTGCCCTCTGCTGGTTGCCCTATCACGTCTACTTCATCGTGACGGGCGTAAACAAGCATCTGAACAAGTGGAAGTCCATCCAGCaggtctatctgtctgtgttgtGGTTGGCCATGAGCTCCACCATGTACAACCCCATCATTTACTGCTGTCTAAATGGCAGATTCAGGGCCGGTTTCAAACGGGCCTTCAGGTGGTGTCCCTTCATCCAGGTGTCCAGCTACGACGAACTTGAGCTCCGTCCCACCCGTCTCCACCCTCGCAACCAGAGCAGCATGTGCACCCTGTCCCGCATCGACACCAGCGTCCACGGCGACGACCCCCGCCGCAGCAGGTCCCTGCGGTGTCAGGCGGAGGTCAGAGACGAGAGCGCGGCGGCGGCCACCAAGCTCTGTCTTCACCGGGAGCCCACGTTCGCGTCCGAGCAGCTCAGCTGAAGGGCTGTGTGCTCCGTTACGGACGGAAAACAACGTGAACGCGTCCTCGGGCGTCCTGTAAATGACACACTGTACATTTCAGAGCGTGCACTGACACTAAACGCACTCAATCCTGCTGCATGATGAAGTAGCACTGCCTCCAAGTGGAGAACTGTGAATGACTAGCGTACTACTCGATGCATGCTGCCTAGCACTGCATACTACcttctttttcaaaacacaacacaacatacGTATTATGCAATGGACATGAGCAGATAGTGTGCTACGCTACAGATTCATCACCTCATCACGTTGCATGATCTATGAAACACAAATGTGTCTTTCAGATGATGCTTAAGGGCGTGCTTGTGATTCGTTCAATTCAGTAGAACTGGACTGTAGAGTATGTCCTGtacatctgtttatttttatgtctgtgCACATGTGCTTTTTGTACTCATTTAACGCGCCGCAGTAACTTTTCGCCGCATAACTTTTACCGCTTTAGCgcttaataaacagaactgcgCGGAAGAACACTGTAGCCGGAACTACTTCTCTCTATGTAAGTCTATGGCGAATCACGCAGCGTTACCTACCCGAACCCGTCTAAATAGGCCCAATATAAACACGTATTAAAGGTGTTGTGCGgtgattcaggacaagccaaaatcacggtttggaaaatggattcacGGTGtacttatatacat

Function

GO:

id name namespace
GO:0007217 tachykinin receptor signaling pathway biological_process
GO:0007218 neuropeptide signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004995 tachykinin receptor activity molecular_function

KEGG:

id description
K04224 TACR3; tachykinin receptor 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12081 lncRNA downstream 13227 31548195 ~ 31548754 (-) True G8093
TU12055 lncRNA downstream 66071 31492297 ~ 31495910 (-) True G8074
TU12069 lncRNA downstream 81637 31479187 ~ 31480344 (-) True G8084
TU12032 lncRNA downstream 83121 31354663 ~ 31478860 (-) True G8063
TU12072 lncRNA downstream 91464 31468295 ~ 31470517 (-) True G8086
TU12088 lncRNA upstream 7309 31579930 ~ 31580156 (-) True G8100
TU12089 lncRNA upstream 8117 31580738 ~ 31589790 (-) True G8101
TU12110 lncRNA upstream 50053 31622674 ~ 31625823 (-) False LOC122349741
TU12116 lncRNA upstream 50053 31622674 ~ 31625823 (-) False LOC122349741
TU12118 lncRNA upstream 50053 31622674 ~ 31626415 (-) False LOC122349741
XM_043245858.1 mRNA downstream 168895 31384340 ~ 31393086 (-) True LOC122349710
XM_043245847.1 mRNA downstream 183442 31372496 ~ 31378539 (-) True LOC122349700
XM_043236591.1 mRNA downstream 587820 30972789 ~ 30974161 (-) True cldng
XM_043235895.1 mRNA downstream 620255 30936398 ~ 30941726 (-) True creb1a
XM_043235422.1 mRNA downstream 688873 30866438 ~ 30873108 (-) True cd99
XM_043236147.1 mRNA upstream 18516 31591137 ~ 31595295 (-) True cldnd1b
XM_043237501.1 mRNA upstream 23210 31595831 ~ 31602441 (-) True glb1
XM_043245889.1 mRNA upstream 50252 31622873 ~ 31626684 (-) True LOC122349741
XM_043245898.1 mRNA upstream 54282 31626903 ~ 31630020 (-) True LOC122349752
XM_043223784.1 mRNA upstream 61780 31634401 ~ 31661603 (-) True LOC122327810
TU12077 other downstream 7946 31550186 ~ 31554035 (-) True G8089
TU12079 other downstream 24565 31532069 ~ 31537416 (-) True G8091
TU11966 other downstream 604495 30946089 ~ 30957486 (-) False G8009
unassigned_transcript_184 other downstream 699020 30862870 ~ 30862961 (-) True trnar-ucu_5
TU11729 other downstream 931476 30630234 ~ 30630505 (-) True G7868
TU12112 other upstream 50053 31622674 ~ 31625823 (-) False LOC122349741
TU12119 other upstream 50053 31622674 ~ 31626415 (-) False LOC122349741
TU12124 other upstream 54349 31626970 ~ 31629972 (-) False LOC122349752

Expression Profile