RNA id: XM_043236286.1


Basic Information

Item Value
RNA id XM_043236286.1
length 3567
RNA type mRNA
GC content 0.47
exon number 18
gene id fnip2
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 11819256 ~ 11835702 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCACTCAGAGCTCGGACAAGCGGAGATGGAGACTGTGTGCCTGAGTTTTCTGTTAGATTGTGGTGATCTTCTGATGTTTAATAGAAGAAACATGCAACTGTGTGAATGGTCCACTTTCCGTGCCTTCCACCGCTCTCTTGGCCAGTTTCCGGCATCTTGTGATTGTTATTCATACCTATTTTGGATGTATATGTAGTGCTTGGAAGGCTAGAAATGAGTGTCTGATCACATTATCACACACCAGGATGGAAAGCAGTTGGGCATCTGCTGAGTTTGATCTAGCTCAGATCAGATTGATTGTGTATCAAGACTGTGAGAGAAGAGGGCGCCAGGTTCTCTTTGACTCCAAAGCAATACATAAACTGGACGCATCCGAGCCGACTCCAGATGAAACCAAAACTCCCCCCAACCGGAGTGGTGCTTGCCACATCGGCAGCCAAGCAAGCGAGAAAGACAAGCCTCCTACATATCAGTATACCAGACCGGCTTCAGATGTGAACATGCTTGGAGAAATGATGTTTGGCTCAGTTTCCATGAGTTACAAGGGCTCAACTCTTAAAATTCACCACATTCGGTCTCCACCACAGCTGATGGTCAGTAAGGTTTTTTCAACCCGGTTTGGAAGCAGCACCTCTGGAAGTACAAATACGCTGCAAGACAGTTTTGAGTCAATGAGCCAAACGTTTCCCAGTCACACCAGCAGCATAGGAGTTTGCCGCGTACCTAGCGCTCCTCTGCTCTGCCTGGCTCGGAGCGCGTCTTTCTTTGCAGCCCACAGTAATCCAGTGGACATGCCAAGCAGAGGACACAGCGAGGACGGAGACAGTGGCATCGCGCGCTCAGCATCTCTGAGCAGTTTATTGGCCACTCCTCTACCATCACCTGGATCTTCCTTCAGTAGTGGCTGTGCCAGCAGTTACCAACGGCGATGGCTCCGTAGCCAGGCCACCAGTCTTCAGCATGGCCCCATACCTCGCTGGAACACTGAAGAAATGTTCAACTTGTCTGATGAGAGCTGCAGCTCCAACCCTGCGATGATCCGGAGGAAGAAGATTGCCATCAGCATCATAATCAGCCTGCcggagagagaagaggaaaacCACAATTTTCaggagttttttttctctcactttcCTCTGTTCGAGTCTCACATGAACAAACTGAAGACTGCCATCGAGAGGgcAATGATTTTGTGCAGAAGGATAGCAGAGTCCAGTCAGCGTGTACAGGTCTATCTGTGTCGAGTGATGGAAGCACTGGGAGAATTCAGGATGACTGTGTGGAACCTGTACATGGCTCCCCGGATCAGCGAGCCAGTCTGGCTTTCCATGATATCCCAGAGTACCGAGCGAAACCTGCTATGTCAGCGCTTCCTAAAGGAGATGAGTTTGCTGATGGACCATGGAGCCAAGAGCCAGTTTCTCTCAGCTCTCCTTACTGCTGTTCTTATGCACCACTTAGCCTGGGTTCCTACGGTGATGCCCAGCAACCTGCCACCAATCAAAACTGCCTGCCAGAAACCTGCCTCTCAGACAGTGGACCTTTTGGCAAAATCTCACCCATACAACCCACTGTGGGCTCAGTTAGGTGATCTGTATGGTGCTTTGGGCTCTCCAGTGAGAGTGTGTCGAACAGTCGTTGTGGGACGCAGGAGGGAACTGGTACAGAGAGTCTTGTATATTCTGTCCTACTTCATTCGCTGCTCAGACCTGCAGGAGCATGTGCCTCCACAAGACCAGATGGACAGACCGGACAGTCCAGCCAATCCCTACAGCTCTCAAACCACTGATCCCACCTCTGAAAAAACATTTCCCCCTAAACCAGACCCATCAAAGCATACTGCTTGTGGTATGGAAAAAGCCCTGAACCCCGAATCTATTCCAGGCACCTCTGTAGAACAACATAATGACACACTTTTGACGGATACAAAATCAACCAATCCATCCCCATCCTCTGGTCTGGAATCATCCACTGTCAGGCCTGAATGTACAGAAATGGGACAGGAATGTTTTGGAGAGGACAGTGACTCTGTCGGGGGTGGATTAGAGCACATTTTGGCCAATCAGAGTCCTCTTTTGCATCGGGTGCAGTTTCACATTGGCAGTCCCAGGGAGACGGAGAATGAAGGACAAGCCGGGGGTCTTAGTGGGGCGGGGTGTGGACGGGGATTCGACAGAAAGTTACATCAGAGGCTTTTGACTGATATTCGGAGAAACGAGAGCTCAGACAGTGCTCTAGGTGACAGTGATGATGAAGAGACATCACTACGAGAACTGTACATGGCCACTGAACAAAAGGAGTATGAGTTACCACTGCCAAGTTATCAGGCTGAAAGCCGAGCGAGTGTTAATCATTTCGGGCGTTCTTTGCTGGGTGGTTACTGTCCTCAGTACATGCCTGACTTTGCCCTGCATGGCATCAGTTCTGATCTTAGGCTCAAACAGTGCCTCATGTCTGACCTGGAACACACCATTCTCCATCCAGCGCTGGATGAACCAGTGGCCGAGGCTCTTTGCATTGTGGCGGATACAGACCGGCTGAGTGTGCAGGTGGTGACGAGTCAAAGGCGCGTGTGTGAGGGTGGGCGGCTGGGCAGGGACGTCATGGTGTCCAACCTTGTACACACACTCATCACATCAGTTCTGCAGTTGTATGCGCTCAACATCGCATCTGACTTTTGTGTGATGCATCTGGAAGACCGATTACAGGAGTTGTATTTTAAAAGTCGATCCTTGGCAGAATATCTAAAAGGACAAACCAGGGTCCATGTAAAAGAACTGGGGCTGGCACTGGGGATCGAGTCCAGTGACATTCCGTTGCTTGCAGCTGTGGCCAGCACACACTCGCCCTACGTGGCACAGATCCTTCTTTAAATAGACCAAGCaagatttatttcactttaaggACCAATCAGAATGTGTTCCTGTTCTGCATGGACCAGCAAGGATCTGATCATTATCAAATGATCACACCAATCATGATGCACTGTGCTCGACAACCATTAGGAGCCTACACCCAGCCTTAATATGCCAATCAGAATGCCTCGTTTGTCCCGCTGACTTGTACGTATATGTGTGCATCTAACTGTCTATAGACTGAATCATGCACCAAATCGGGACACTTGTTAAcgctgttattattttacagtatctCATGTCTTTTCAAGTTCTAATTTTAAAAGGGAAGACTGGAGAACGCACATGTCATTGATGAAAAACATCACTATGTGCAGGAATATGGAGAAGCATCTGTACATTTGATCCTTCCATTGAATGTACAGTAGTGTAGTTCATTATGAATGAGAGcatatctataaaatatataacctCTCTGTGAAGCACCTTAGTTTACATCAAGAGCTATATTTTGTAGATGGTTGATCTTGGAAGAAATAGTTCCCCCAGACATGAGAAGCTTAAAATTTAAATTCGTAGGACTAActttctgcttttttaaaaaaagtaccctggctatactttttttttcttcatctaataaaagtaaaaatagaaatgacaaaaaaaaaagttaaaaaaaaaaaaatctttaaatgtgatccgcacaatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3842 lncRNA upstream 40310 11773971 ~ 11783035 (+) False tmem192
TU3840 lncRNA upstream 52760 11769443 ~ 11770585 (+) True G2645
TU3816 lncRNA upstream 60011 11744876 ~ 11763334 (+) False G2625
TU3815 lncRNA upstream 66058 11744876 ~ 11757287 (+) True G2625
TU3813 lncRNA upstream 77384 11738984 ~ 11745961 (+) True G2623
TU3851 lncRNA downstream 12429 11848131 ~ 11849277 (+) True G2648
TU3945 lncRNA downstream 85037 11920739 ~ 11922365 (+) True G2711
TU4009 lncRNA downstream 412796 12248498 ~ 12250778 (+) True G2767
TU4024 lncRNA downstream 454420 12290122 ~ 12290466 (+) True G2782
TU4037 lncRNA downstream 501940 12337642 ~ 12348940 (+) True G2790
XM_043236296.1 mRNA upstream 6857 11800041 ~ 11816488 (+) True march1
XM_043236312.1 mRNA upstream 6857 11800192 ~ 11816488 (+) False march1
XM_043236304.1 mRNA upstream 6857 11800194 ~ 11816488 (+) False march1
XM_043236320.1 mRNA upstream 6857 11800237 ~ 11816488 (+) False march1
XM_043239864.1 mRNA upstream 40275 11773956 ~ 11783070 (+) True tmem192
XM_043247524.1 mRNA downstream 1904 11837606 ~ 11844060 (+) True LOC122350793
XM_043246999.1 mRNA downstream 16523 11852225 ~ 11865138 (+) True uba6
XM_043234807.1 mRNA downstream 31603 11867305 ~ 11910014 (+) True apbb2b
XM_043234823.1 mRNA downstream 31603 11867305 ~ 11910014 (+) False apbb2b
XM_043234833.1 mRNA downstream 31603 11867305 ~ 11910014 (+) False apbb2b
unassigned_transcript_4 other upstream 512881 11310393 ~ 11310464 (+) True trnap-agg
TU3404 other upstream 841989 10845012 ~ 10981356 (+) False LOC122347856
TU3408 other upstream 841989 10845012 ~ 10981356 (+) False LOC122347856
TU3407 other upstream 841989 10915176 ~ 10981356 (+) False LOC122347856
XR_006251248.1 other upstream 1334234 10483640 ~ 10489111 (+) False tlr3
TU3862 other downstream 1929 11837631 ~ 11840166 (+) False LOC122350793
XR_006251287.1 other downstream 808977 12644679 ~ 12657595 (+) False kdm4c
XR_006251292.1 other downstream 808977 12644679 ~ 12648403 (+) False kdm4c
TU4185 other downstream 850543 12686245 ~ 12690270 (+) False dnah6
TU4187 other downstream 877830 12713532 ~ 12717506 (+) False dnah6

Expression Profile