RNA id: XM_043236320.1


Basic Information

Item Value
RNA id XM_043236320.1
length 4077
RNA type mRNA
GC content 0.42
exon number 7
gene id march1
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 11800041 ~ 11816488 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTCAAATGagctctttctgtctgtctctctctttccctgtcACAAATCACACAGGTAGAACGAGAGAGGTTGGCTTCAGCTTTTTTTGGGATGTGTCAAGCGGCTCTCCGGACGTTTCTCCATCGCAGCTGAAGTCTAAGATCTTAACCAGGATACTTAACCTGATTTCGTGCGTGTGTCTGTAGGAGCGTGCGTACGAGCTCCGGAGCAGGGCTTATTCTTTGTTTCCATGCCGACCCTCAGGATGGTGTGAGCGTGTTGTCTTTGGTGGGCTGAAGGCAGCGAAGTATCCCGCAGTCCCGAGCACTGCTAGCATGCCTGTGCATCAGATATCCGTTGTGCCCATCGCCAAGGAGACTGCCAACACTTCCAGCCGGAATAGAGACAAGAGTAAAGAGAATGAGGGTGAGAAGGCACCTGGGCGATCAGGAAGTCGATCCAGCAATATATCTAAGGCGAGCAGTTCCACCCCAGGAGCCGTGCTGAACAGTGTCTCTCAAACATCAGTTACACCGTCCTCACAGGACATATGCAGCTCTAGTGGTCAAGCTAAACTTGAAGTAGATGTCTCAGATCAGACTACACTCGTCATGCCCATAAACCCCACCCCCGACTCCGCCCCCACCGCAAAGCGCCAAGTCAAACGCCGCATCCGTCGGCGACGGGAGAGCACCGGGACCGTTGGGTGTGCAACAGATTGTGTGGACCAACCGAGACATTCAAGGTTgcacaagcaaacacacacacactccgacTCCTCCTCAGAGGACGAGCAGCGCTGGAGAGAAGCGCGCTCCTGGAGTCGCCAGAAAGCGCGACGGAGGCGCAGCAGCAGCCGACACACGCAAGCGCATTCCCGCGAGGATCAGGACACCAAGCTCATGTCTGTCAACTCAGACGAGGGACAGAAAGAGAACCAGCCACCACCGTGCAAGGGCCCCAACACCAGGGCCCATAAAAAGCTGTCAAAGCGGGAGGAGCGTGGGGGCCAAAACCAGGCAGCCAATCACAAAAAAGGCAATGAACGTGGTAGTAATAAAAGTGGAAGTGAGGAGGAAGAGCCTATTACAAAGACATATGAAGAGAGAGGTTCAGGAGACCCAAATATGTCTGTCCCGTCACCTTATAAATGCACTATTCCCGCCAATCAAAATGGTGCTGCGCAACAGGCATGCACTGATGATGAACTAGAGGTGTGCAGGATCTGTCACTGTGAAGGTGACGAGGAGTGTCCGCTCATCACCCCTTGCCACTGTACAGGAAGTTTGCGTTTTGTGCACCAGGGCTGCCTGCACCAGTGGATAAAGAGCTCCGACACACGCTGCTGTGAGCTGTGCAAATATGACTTCATCATGGAGACACACCTCAAGCCTTTGCGCAAgtgggAAAAGCTACAGATGTCTACAAGCGAGAGGAGGAAGATCTTCTGTTCTGTGACTTTTCACCTGGCTGCTGTGGTGTGTGTCATCTGGTCACTCTACGTTCTGATTGACCGCACAGCTGAAGAGATACGCCAAGGCAAGAACAATGGGGTGCTGGATTGGCCGTTCTGGACCAAGCTCATCGTGGTGGCGGTTGGCTTTGCTGGAGGACTCATCTTCATGTACATTCAGTGCAAAGTCTACCTGCAGCTCTGGAGGAGGCTGAAGGCTTTCAACAGGATCATCTTTGTACAGAACTGCCCCGACACCGTCCGCAACGGAGAGAACAGGCCGGCCCCGGTCACACAGAGCAACGGCACGCACGGGACGGCAGAGGTTCCCGCTCttcagacacaaacaaacacaggagGAGTGGAAATGGCCCCCGTTTGACGACGGGTGCTTGCTGCTTTGAGTCTCAGTAGCTGAAAAGTTTAGGAAAGGGCTCCCTCCTGGTGTATTTGACCAAAGTGATGCGATTTACATAcaacaaaagcacttttttcatttttattagagGGTGGGTAAAGTTACATAAGACGTTTATATAGGGCTATCGAAATATAACATTGTGTGCAATTAACTATATACAAAACATGGTGTAAAACATTATAACATATAATCATACCCTCGATTCAGCTACTTAAATAGAGAAATGAGGGATTTATATTATCTGAGCCATTTAAGCTTAAACAACCTTCATTTTTTTGCAAGTCAGCAGTCATTAAGTCGATTAAAAAGGCAAGACACTACAGGCAAATGGTTCATGTTGAGATTTTGGAGTAGTGTGacaaaaaacatccaaaaacacattcaattaCAATGTATATCTTTAAAGATCTTTTCTCAAAAAGAGTTTTTATACACCAAACTTGGTTTTAATTTACTGAGTGGTTTGCTTATGTATCATTTGCCtgtatttatacaatattttactcttaaaaaacatggtgaaaaagtaatttttcgGACTGTTATACAGTATTCGTGGAGTGTTAATAAGAGATATTCAAAATCCCTTctttgaacaaaatgaaacaggATTTTTGAACCTAAACAGGCACTGAAAATTAGTgcatatttagttatattttttaacataacatttcagaaagCTTGTAATACAAAAGCCATCAGAATGGGAGTCccatcagctgaaaaaaagctgctaaatttctccaaacttGTTTAGCTGAAGAAGCACATTAATCTGCATCTCAGATGGCCTGATAATGAGTCGATTTTCAGCTAATTTGTATTTTGGGAagaactaatcctttaattgTGTTATCCTATTCACCTGGGGTGTCTTGCCTTAATCGATTGGCAGCCCTGTTCTATAGcctacatactgtatgtgtaataCTGGTTAGatctaaacaaaataaggtaAGAATTCTTATAACCTGTTCTGAAGTGGTTAGGTGTTCTCTTATTCTCTGTAGATTAGCGAGAATTCGGTGACATCTGAATGTGACAGGGTGGTTACAGCAGTGATTATTCACGTCAAGGAAGCCAATCCTCTGTAGCTTTGGCTTTCACCTCAGCTGTCTTTTCCTCAATCTCTTAAACTATTGGATCAAGTAAAGAGTCACCTTACAAATAAATGGAATTACACTGAAAGTCTTCATGAAACCAAAGATACAAGTATTACATACTAGGGATCAGACAAGCGCTGGTAAATAGCTTCTGTTTTTTAATCATGGTAACATCAATTGCTTTGTTTTCAGTGatctgtaaaaaatgttttatagtttatagtttgtACGTACACCCATATCCTGGTTATCATTTCACCTCTTTATTTCAGTGGGTTATAATGAAATTTTCAGATCGTGGCTGGGATTTGTGtgaaatacattcatatatatacatatatgtatgtatatgtaacaCTATCGAaaatttgaagtggatcaaaaccttattattttagttgtcaacaaaatgtgttcttgtaaACTTTGATGAACCtatttgatccacttcaaattctgactactgtgtgtgtgtgtgtatatgtggcACACATTTtctgggttacactttattttaaggtgttcttatttatattttaagttcaCTATTAATATATCAATCATTTACTGTTCTTACTATAGTAAGTAAATGTAACAAGGACAGtataaaatgaagtgttatCTAATCTTGCTGTgtctgaaaaacaaagaaaaccaCAATAACCTTttgccatatttatttttaaaatagttaaaatctataaaaaaaaatgagtggTAACCAggatttgttttcttctatGTTTTATGGCATTAagaactggattttttttttaaacaaaaacttatgcAGCTTTTAAGAATGTATGTTTTGAAAGGTTTATGGAgaatagtgtttatttatttctaagaCAGAGATTGGTTAATTTGCAGGTTTGATCAGGTTTTGCTGAGTGGTACTCAGAAAGAATTCagcaaattttacatttttgtattgtgaTATTTCCGCAGTGGCATCATATCTtgatatatataaagataatttaaaaaatgcccaTAGGGCAATACCAGGATCAAGTGAGATTTGGTGATCAACATTGGCGTTCACAATTCAGATGCACATTATCAAAGGAACGTGGAAAAATCAGTCAGTGCAATAAACCTGTGAATGTTTCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3842 lncRNA upstream 17202 11773971 ~ 11783035 (+) False tmem192
TU3840 lncRNA upstream 29652 11769443 ~ 11770585 (+) True G2645
TU3816 lncRNA upstream 36903 11744876 ~ 11763334 (+) False G2625
TU3815 lncRNA upstream 42950 11744876 ~ 11757287 (+) True G2625
TU3813 lncRNA upstream 54276 11738984 ~ 11745961 (+) True G2623
TU3851 lncRNA downstream 31643 11848131 ~ 11849277 (+) True G2648
TU3945 lncRNA downstream 104251 11920739 ~ 11922365 (+) True G2711
TU4009 lncRNA downstream 432010 12248498 ~ 12250778 (+) True G2767
TU4024 lncRNA downstream 473634 12290122 ~ 12290466 (+) True G2782
TU4037 lncRNA downstream 521154 12337642 ~ 12348940 (+) True G2790
XM_043239864.1 mRNA upstream 17167 11773956 ~ 11783070 (+) True tmem192
XM_043236914.1 mRNA upstream 31810 11765438 ~ 11768427 (+) True LOC122342793
XM_043239840.1 mRNA upstream 45821 11753508 ~ 11754416 (+) True LOC122345576
XM_043236902.1 mRNA upstream 51888 11747417 ~ 11748349 (+) True LOC122342786
XM_043236877.1 mRNA upstream 62033 11735379 ~ 11738204 (+) True LOC122342774
XM_043236265.1 mRNA downstream 2768 11819256 ~ 11835702 (+) True fnip2
XM_043236257.1 mRNA downstream 4771 11821259 ~ 11835702 (+) False fnip2
XM_043236276.1 mRNA downstream 4771 11821259 ~ 11835702 (+) False fnip2
XM_043236286.1 mRNA downstream 6857 11823345 ~ 11835702 (+) False fnip2
XM_043247524.1 mRNA downstream 21118 11837606 ~ 11844060 (+) True LOC122350793
unassigned_transcript_4 other upstream 489773 11310393 ~ 11310464 (+) True trnap-agg
TU3404 other upstream 818881 10845012 ~ 10981356 (+) False LOC122347856
TU3408 other upstream 818881 10845012 ~ 10981356 (+) False LOC122347856
TU3407 other upstream 818881 10915176 ~ 10981356 (+) False LOC122347856
XR_006251248.1 other upstream 1311126 10483640 ~ 10489111 (+) False tlr3
TU3862 other downstream 21143 11837631 ~ 11840166 (+) False LOC122350793
XR_006251287.1 other downstream 828191 12644679 ~ 12657595 (+) False kdm4c
XR_006251292.1 other downstream 828191 12644679 ~ 12648403 (+) False kdm4c
TU4185 other downstream 869757 12686245 ~ 12690270 (+) False dnah6
TU4187 other downstream 897044 12713532 ~ 12717506 (+) False dnah6

Expression Profile