RNA id: XM_043236922.1



Basic Information


Item Value
RNA id XM_043236922.1
length 765
RNA type mRNA
GC content 0.49
exon number 10
gene id cpe
representative True

Chromosome Information


Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 12211436 ~ 12225082 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ATGGCGCCGTCTGCCACGCAGTGGGCTGGGACTCAGCACTCAGAAACAGGCCATCCGTGCTCCGCTGAGGAGCATGTGATGTACCCTTACATCagatacacacattcacacatgaTGGGTGAGCCAGAGTTTAAGTACATACCGAACATGCACGGCAATGAGGCTGTGGGCAGAGAGCTTCTCATCTATCTGGACTGGTTTGTGGGCCGCAGCAACGCTCAGGGATTATCTGAACCGAACTTTCCTGATCTTGATCGTATCGTCTACATGAATGAAAGAGAGGAGGAGCTACCAAACTATCTTCTGATAAACATGAAGAAAGCTGGGGATGAAAACACCAAGGTGAGCACTGAAATTAAGGCTGTCATTCACTGGATCATGGACATCTTTTTGTCCTATCAGCCACCCTTACACGGAGGAGACGCGGTGGCCAATTACCCTTATGATGAGACACGCAGTGGTTCTACCCATGAATATAGTGCTAGTCCAGATGATCTGGTATTTAAGTCTGGCTAAGGCCTACTCCAACTATAACCAGTGATGCTCCCAGCCCAAACGGCGCCATGCACATAGAATGATGATGACTCCAGCTTCAAGGAGGGCATCACTAATGGAGGGCCTGGTACAAGTGTTCCTGGAGgtATGCAGGACTTCAACTATCTGAGCAGCTAATTGTTTGAGATCACTCTGGAGCTAGGCTGTGATAAAGTTTCACTCCCTGAGTTCACGCTCCAAGCAGTACAGGGACCAGAACCGCTTGACTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU3987 lncRNA downstream 60720 12142906 ~ 12150716 (-) True G2750
TU3989 lncRNA downstream 113152 12097910 ~ 12098284 (-) False ugt8
TU3979 lncRNA downstream 282440 11927551 ~ 11928996 (-) True G2742
TU3914 lncRNA downstream 301426 11849622 ~ 11910010 (-) False G2690
TU4090 lncRNA upstream 64747 12289829 ~ 12290106 (-) True G2826
TU4096 lncRNA upstream 110270 12335352 ~ 12336759 (-) True G2829
TU4112 lncRNA upstream 201131 12426213 ~ 12442443 (-) True G2837
TU4113 lncRNA upstream 202085 12427167 ~ 12443813 (-) False LOC122348535
TU4114 lncRNA upstream 210835 12435917 ~ 12441497 (-) True G2839
XM_043249903.1 mRNA downstream 15753 12161837 ~ 12195683 (-) True tll1
XM_043240943.1 mRNA downstream 94053 12097929 ~ 12117383 (-) True ugt8
XM_043250940.1 mRNA downstream 116542 11960370 ~ 12094894 (-) True ndst3
XM_043236389.1 mRNA downstream 284614 11923120 ~ 11926822 (-) True mettl14
XM_043247864.1 mRNA downstream 293229 11910750 ~ 11918207 (-) True LOC122351032
XM_043246632.1 mRNA upstream 11123 12236205 ~ 12246905 (-) True klhl2
XM_043236093.1 mRNA upstream 23413 12248495 ~ 12281828 (-) False rapgef2a
XM_043236102.1 mRNA upstream 23413 12248495 ~ 12281827 (-) False rapgef2a
XM_043236106.1 mRNA upstream 23413 12248495 ~ 12281827 (-) False rapgef2a
XM_043236088.1 mRNA upstream 23413 12248495 ~ 12281827 (-) False rapgef2a
TU3761 other downstream 698603 11510439 ~ 11512833 (-) True G2584
unassigned_transcript_5 other downstream 713078 11498285 ~ 11498358 (-) True trnai-aau
TU3498 other downstream 1157495 11053154 ~ 11053941 (-) True G2401
TU3478 other downstream 1230070 10953875 ~ 10981366 (-) True G2382
XR_006251247.1 other downstream 1397361 10810310 ~ 10814075 (-) False LOC122347618
XR_006250806.1 other upstream 116653 12341735 ~ 12365995 (-) False gria2a
XR_006250810.1 other upstream 118367 12343449 ~ 12365995 (-) False gria2a
XR_006251305.1 other upstream 679117 12904199 ~ 12926482 (-) False prom1b
XR_006251304.1 other upstream 679117 12904199 ~ 12926482 (-) True prom1b
TU4379 other upstream 929404 13154486 ~ 13159246 (-) False smim14

Expression Profile