RNA id: XM_043236969.1


Basic Information

Item Value
RNA id XM_043236969.1
length 609
RNA type mRNA
GC content 0.42
exon number 6
gene id LOC122342830
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 12328136 ~ 12331902 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGAAATGATGGAGTTTACCTCAGCAGACAAAACTACAGTTATCATCCAAATAAATCCACAAGAGGCAAAAGACAGCGCCATTTATGTTGATGGACTGGAGGATGGAGAATTAAATCACAATGCAGCTCTTAAAGGATTTTTCAAAGCAGAGCCAAAGGCACTTGGGACTGTGCAGATAATGACTGGAGTGATGGTTTTCTTACTTGGTATTGTACTCACAAATCTGAGCTACAGTTTTCATATGATGTCTGTATACGGTTTCATCACTTACTGGGGATCTGCAATTTACATCAGTACTGGATCTCTGTCTGTTGCAGCACAGAATCAGTTTCATCTATGTGTGCTGAAAGCCTCTCTTGGAATGAATTTGTTCAGCATCATAACTGCAGAAACAGCCATCATTCTGGCGAGTATGGACTTATCACGGGTTTCTTTATACAATTGCTGCTATGATGACAAGAGATCCTGTTTGGGGATCACTGGAATATTGCTGGTGTTATCCATCCTTCAGTTGATCATCTCCATCGCTATCTTAGTATTTGCCTGCAAAGTCGCCTGCAAACCTGAGTCTACAGTGGTCAACGTGTCACTAAACCAGGGATACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4024 lncRNA upstream 37670 12290122 ~ 12290466 (+) True G2782
TU4009 lncRNA upstream 77358 12248498 ~ 12250778 (+) True G2767
TU3945 lncRNA upstream 405771 11920739 ~ 11922365 (+) True G2711
TU3851 lncRNA upstream 478859 11848131 ~ 11849277 (+) True G2648
TU3864 lncRNA upstream 480124 11793561 ~ 11848012 (+) True G2651
TU4037 lncRNA downstream 5740 12337642 ~ 12348940 (+) True G2790
TU4039 lncRNA downstream 5740 12337642 ~ 12348940 (+) False G2790
TU4040 lncRNA downstream 5740 12337642 ~ 12348940 (+) False G2790
TU4059 lncRNA downstream 58210 12390112 ~ 12392194 (+) True G2806
TU4041 lncRNA downstream 60708 12392610 ~ 12395729 (+) True G2791
XM_043247831.1 mRNA upstream 5678 12318615 ~ 12322458 (+) False LOC122351007
XM_043247841.1 mRNA upstream 5678 12318615 ~ 12322458 (+) False LOC122351007
XM_043247824.1 mRNA upstream 6340 12318615 ~ 12321796 (+) True LOC122351007
XM_043249218.1 mRNA upstream 15621 12310519 ~ 12312515 (+) True med28
XM_043236185.1 mRNA upstream 171558 12130466 ~ 12156578 (+) False spock3
XM_043243829.1 mRNA downstream 218026 12549928 ~ 12590890 (+) False pax5
XM_043243855.1 mRNA downstream 218026 12549928 ~ 12590890 (+) False pax5
XM_043243846.1 mRNA downstream 218281 12550183 ~ 12590890 (+) False pax5
XM_043243837.1 mRNA downstream 220991 12552893 ~ 12590890 (+) True pax5
XM_043243521.1 mRNA downstream 312777 12644679 ~ 12658507 (+) True kdm4c
TU3862 other upstream 487970 11837631 ~ 11840166 (+) False LOC122350793
unassigned_transcript_4 other upstream 1017672 11310393 ~ 11310464 (+) True trnap-agg
TU3404 other upstream 1346780 10845012 ~ 10981356 (+) False LOC122347856
XR_006251287.1 other downstream 312777 12644679 ~ 12657595 (+) False kdm4c
XR_006251292.1 other downstream 312777 12644679 ~ 12648403 (+) False kdm4c
TU4185 other downstream 354343 12686245 ~ 12690270 (+) False dnah6
TU4187 other downstream 381630 12713532 ~ 12717506 (+) False dnah6
TU4406 other downstream 871351 13203253 ~ 13205688 (+) False rhoh

Expression Profile