RNA id: XM_043237010.1


Basic Information

Item Value
RNA id XM_043237010.1
length 939
RNA type mRNA
GC content 0.55
exon number 3
gene id fgfbp2b
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 12897567 ~ 12899663 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

atgttttcgtCCACAAACAGCGCGGACAGCAACTTCCGTTTCGTCTCTATGGTTACAGGCGGCTCCAGACTAGAGTCCAGAGGCCCCCCCAGTCTGGAGGGATGTGTGCACTCTGCCCTGCTCAAAGACCCCTTTGTGGGACTCGTGTTTATAAAGACGGCCTGCACCTCCAACACCTTCCCGAGTCCATTCTACACCTCCATCATGAGAGCCGTATGCAGCGCCGCTTTCCTTCTGGTCTGTTTCGTGTGGGCTACTAACGCTCAGGCCCAGAACAGCAGTAACCAGGGGAACGGGATCAACCACGTCGAAAGACAGCAGCAGCCGCCGAAAAGCAGCATCTGGGATGAACCCATTCGCTTCAACACCAAAGCAAAAGATAGCTGCTCCATGGCGATCTTCGGCCAGACCAACTTCACCAAGCTGCGTGTCTCCTGCAAGAGCAAGGGCAAGTCGTACTGGTGTGACTTCCTAGGCAAACCTAACCTATGCAGGCCATATAGCAGCAACCCTCGGCACTTCTTTACTCAGATCATGTGGGACATGAGGAAGCTTCAAAACGCCTGCCAGGGACCGCGGGTCTACAAGCCGCAGATGTGTCGCTCTGCCTCAGATGAGGTCCAGATGGTGTTCCACGCCTCTTGGCCCAAAATCTCCATCCCAAAGCCTACCCAGGTCAAGTCCAGCATCACCCCTACCAAACCTCCGAGCTCAAAGCAGCAGCCCAAACCTCAGCAACCAGCCAAACCAGCCGCCAGACCAGTCAAGCCTGCCGTTACCAAGACTGTTACACCACGGAAATCTGTAAAGACCATCACAGCGAGACCCACAGCGGCAGACGAGACTCAAGCGACCAAGATGGCGGAGGAATACTGCTGGAAGAGTCTCCAGGGCATCTGCGAATACTTCATTAGCTGGTTCCAAAACTAATTCATCACC

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4338 lncRNA downstream 9914 12886776 ~ 12887653 (-) True G3020
TU4173 lncRNA downstream 279525 12617768 ~ 12618042 (-) True G2891
TU4170 lncRNA downstream 302273 12592441 ~ 12595294 (-) True G2889
TU4163 lncRNA downstream 347328 12549922 ~ 12550239 (-) True G2882
TU4117 lncRNA downstream 441995 12455354 ~ 12455572 (-) True G2842
TU4359 lncRNA upstream 69430 12969093 ~ 12973012 (-) True smim18
TU4410 lncRNA upstream 306124 13205787 ~ 13206826 (-) True G3070
TU4414 lncRNA upstream 395034 13294697 ~ 13295015 (-) True G3074
TU4420 lncRNA upstream 403090 13302753 ~ 13313529 (-) True G3080
TU4437 lncRNA upstream 490412 13390075 ~ 13390345 (-) True G3093
XM_043244029.1 mRNA downstream 3320 12892635 ~ 12894247 (-) True fgfbp1b
XM_043243971.1 mRNA downstream 21169 12873205 ~ 12876398 (-) True uchl1
XM_043243762.1 mRNA downstream 42573 12842252 ~ 12854994 (-) True chrnb5a
XM_043243945.1 mRNA downstream 74093 12816755 ~ 12823474 (-) True chrna6
XM_043243793.1 mRNA downstream 103163 12778589 ~ 12794404 (-) False chrnb3a
XM_043243653.1 mRNA upstream 4536 12904199 ~ 12926482 (-) False prom1b
XM_043243634.1 mRNA upstream 7098 12906761 ~ 12926482 (-) False prom1b
XM_043243625.1 mRNA upstream 7098 12906761 ~ 12926482 (-) False prom1b
XM_043243662.1 mRNA upstream 7475 12907138 ~ 12926482 (-) False prom1b
XM_043243687.1 mRNA upstream 29453 12929116 ~ 12943417 (-) True tapt1b
XR_006250806.1 other downstream 531572 12341735 ~ 12365995 (-) False gria2a
XR_006250810.1 other downstream 531572 12343449 ~ 12365995 (-) False gria2a
TU3761 other downstream 1384734 11510439 ~ 11512833 (-) True G2584
unassigned_transcript_5 other downstream 1399209 11498285 ~ 11498358 (-) True trnai-aau
TU3498 other downstream 1843626 11053154 ~ 11053941 (-) True G2401
XR_006251305.1 other upstream 4536 12904199 ~ 12926482 (-) False prom1b
XR_006251304.1 other upstream 4536 12904199 ~ 12926482 (-) True prom1b
TU4379 other upstream 254823 13154486 ~ 13159246 (-) False smim14
unassigned_transcript_6 other upstream 318731 13218394 ~ 13218468 (-) True trnar-ucg
unassigned_transcript_7 other upstream 319633 13219296 ~ 13219368 (-) True trnar-ucg_1

Expression Profile