RNA id: XM_043237166.1



Basic Information


Item Value
RNA id XM_043237166.1
length 774
RNA type mRNA
GC content 0.43
exon number 5
gene id LOC122342943
representative True

Chromosome Information


Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 14704493 ~ 14706643 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ATGTTGTCTGTGTATAAAGCTGTTCCAGTAGACAAGCATCTTCTGTCAGTTCCAGCAGAGTCGAGGCGGGCTCTGCCGTCAGATACCCTGCGTCATGCTCTCGCTGAGACTTTTAAAGATGAGCAGCGCTTCCAGCTGGGCCTCATGGATGATGCAGCAGAGTGTTTTGAGAACATTTTAGAAAGGATACACCTGCACCTGGTTTCTGATTCAGCCACAGAAATGTGTACTTCTAAATCGTGCATCACCCACCAGAAGTTTGCCATGACCCTCTATGAGCAGTTTGTCTGTCGTAGCTGTGGCGCATCATCAGACCCTCTTCCCTTCACTGAGCTTGTGCACTATGTCTCCTCCACGGCCCTATGTCAACAAGTGGAGCGAATCTTGGAGAAGACGGACAGACTACGTTCGGACATGTTTGGTGAACTGCTGCAGGCAGCCAACACCATTGGAGATCTCCGCAACTGCCCTGTATATcagcttttcttttattttaaaccagtTGCATGCGCATCCTTTTCtatgcatttaaagtgaaacaactgaactgaaatataGGAGCCTTATAACAATGCTCGTTTTAGAAGAACATTTGAGACGAcacttagaggcttttgcagcTGTCCTTTTTATATATTCTCTTTATGGACATTGTATTAATACTTCTTATGAATATTCCTAAATAAGTTCTTCTCAGGCTGTTTTTTAAAAGGCttcttatattgtttattttagttgagCACAAATTGCACAGATAATCTTATATCCCTGAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU4985 lncRNA downstream 16633 14661474 ~ 14687860 (-) False usp53b
TU4987 lncRNA downstream 16633 14661474 ~ 14687860 (-) False usp53b
TU4986 lncRNA downstream 41076 14661474 ~ 14663417 (-) False usp53b
TU5004 lncRNA downstream 67906 14635694 ~ 14636587 (-) True G3475
TU4808 lncRNA downstream 93707 14610497 ~ 14610786 (-) True G3357
XR_006251739.1 lncRNA upstream 27735 14734378 ~ 14736414 (-) False LOC122351313
XR_006251737.1 lncRNA upstream 28213 14734856 ~ 14736414 (-) True LOC122351313
XR_006251961.1 lncRNA upstream 35465 14742108 ~ 14742636 (-) True LOC122353106
TU5038 lncRNA upstream 42744 14749387 ~ 14750174 (-) True G3493
TU5041 lncRNA upstream 51477 14758120 ~ 14759025 (-) True G3495
XM_043250189.1 mRNA downstream 12129 14686596 ~ 14692364 (-) True myoz2b
XM_043248985.1 mRNA downstream 19632 14663278 ~ 14684861 (-) False usp53b
XM_043248738.1 mRNA downstream 19633 14663278 ~ 14684860 (-) True usp53b
XM_043248892.1 mRNA downstream 20138 14663278 ~ 14684355 (-) False usp53b
XM_043248823.1 mRNA downstream 20140 14663278 ~ 14684353 (-) False usp53b
XM_043237192.1 mRNA upstream 36002 14742645 ~ 14743676 (-) True LOC122342957
XM_043242889.1 mRNA upstream 72558 14779201 ~ 14784805 (-) True LOC122347500
XM_043254604.1 mRNA upstream 79756 14786399 ~ 14793366 (-) False synpo2b
XM_043255425.1 mRNA upstream 79756 14786399 ~ 14793366 (-) True synpo2b
XM_043256207.1 mRNA upstream 79756 14786399 ~ 14792332 (-) False synpo2b
TU4627 other downstream 820257 13882278 ~ 13884236 (-) False LOC122350629
TU4632 other downstream 861850 13841542 ~ 13842643 (-) False LOC122350606
unassigned_transcript_100 other downstream 1315168 13389253 ~ 13389325 (-) True trnar-ucg_69
unassigned_transcript_99 other downstream 1315987 13388434 ~ 13388506 (-) True trnar-ucg_68
TU4412 other downstream 1412770 13291296 ~ 13291723 (-) True G3072
TU5035 other upstream 40186 14746829 ~ 14748975 (-) True G3491
TU5081 other upstream 218442 14925085 ~ 14925363 (-) True G3522
TU5072 other upstream 313999 15020642 ~ 15029620 (-) True G3515
TU5142 other upstream 523896 15230539 ~ 15230886 (-) True G3571
XR_006251556.1 other upstream 1362534 16069177 ~ 16073920 (-) False alg11

Expression Profile