RNA id: XM_043237214.1


Basic Information

Item Value
RNA id XM_043237214.1
length 5611
RNA type mRNA
GC content 0.51
exon number 23
gene id fam193a
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 18285790 ~ 18304696 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTGGAATTTGAAGTCTGCTATGCTGTGAGCAAGTCGGCAGGCTCTTAGATTATATCTCTCAAATACAGTTGAATTTTACCCGTATTCGCAGCGCCAGAGCCTGGCATTGCACTCGAGACCCCGCTGTTTGTAGACGGAGCGCTGTCTGTGTATTCCGTGGGGTAGAAATGAGTCCTACAGACGCTAAACGCGGAGCGAAGCGCAGGAAGAATAAGCGGGGCGGCGGCGCAGGGAAGGCCGGAGCTCCGCCAACACCCTCCAGCAGCAGCGCACACGGAGACTCGAGCACCATCTCTAGCCTCAACGGAGAGGTCCCAGTCAATGGCGCTCCACAGTTTTCAGAAGGGCCAGTAAACGCTGACTTCTCAGGAGTCCTTCAGACCCCGTTCACATTCGGGGTGAACCAGAGGGCCCCCTACACCACAGGCGACCGCTGCCTGCTGTGTCGCAGCGAGCGCAAGGACAGCGTCTCCCAGGACATGGGAGGATCCAGTCAGAATGGCACAGCGCAGTTGCCCAAATCTTCCAGCGCCCTTCAGTTGCCTCTGTACGTCTGCTCCGACTGCAAGCGCACAGTGGAGAAGGATGATCGTCAGCCCCCTCTTGACCAGTCTCTGTTgAATCAGGACTTCTTATTGCACATGCCGATGGGTAATGGCGGTTTGTCCCAGGAGCCTTTGGGTGCTGGAGGGAGACTGGCGGTCGGTGCTCCTACGCTGCCTGCTCCAGATCTCGGCGCTCCTCTCACTGCAGACACCGTGTGTAGCTGTGAGGCCTGTTATGAGCGGAGGGAGATCACGGCTGAGTCAGAGCGGGAGTCACAACAACTGCAGAATCACTGGTCTGAGGTCAGGTACCTGGTTCGGTGCATTTACCGGCAGACTGGGACTCCGCTGGCTGATGATCAGGATCAGCCTCTTGACCGGGACAAAGAAAGCATGAAGGAACTTGTTGACAGGCTTTGTGAAAAAGACCCCTACCAGTTGTACCAGCGTCTGGAACAGCAGGCAAGAGAGTATGTCTTAGAGATGAAAGTGCGGTTACTTAAGCACCTTTCCACAGGCTCAAAGGCACCCGGTGCAGTGTCTCAGGGGCCTCCACAGGCCCACCAGTTCGTCTCATTGCTGCTAGAAGAGTACAATGCTCTCTGCCAGGCGGCCCGCACCATCAGCAGCTTCCTGCTCACCCTGGAGAATGAACATTTGCAGAAGTTTCAAGTGACGTGGGAGCTCCACAATAAGCACCTTTTTGAGAACTTGGTGTTCTCTGAACCCATCCTGCACAACAGTCTACCTGCCTTAGTGGCCCAGCtcagGCAGGGCACAACATCCCATGATTCATACAGTGAGGATATGTACCGTACACTGCTGGAGAGGTACCACCAGCTGGATCAGGAGATGAGTGCTGTGGCTCTCGAATGGCTGGAGTGTGAGAAGAGGATTGATGACTATGTTGATGAGCAGTTGCTTTTCAAGGTTGAAGGTCAGAATCTGACAAATCAAAGGACAGAACCACATAAGTCtttaattaatagaaatatgtcttTAAGAACCAAGCAGCGGATGCTCAAAGAAGATGCAGAGATCTTCAAACAGAAAAGATTTTTTGAAGAGCagTTCCTGCCGAACAGTAAAAAGTCTTTGGGTGGTGACAGTAAGTTCACAGACACGGTGAAACAGATGCTTTCGTCCAGACTGAGTATCCCCGACTGTCCCAACTGCAACTACAGACGGAGATGCACCTGCGACGACTGCAGCCTGTCTCACATCCTGACCTGTGGCATTATGGATGCTCCTATGGCAGAGGATCTGCATCTGAAGCTGCCCCTACAGGCGGAGCCTCCCCGGGACTACTTATCAGAGGTCCATCCCCCCAGCATGTCATCAGGCAGCTCGGGGTCCGGCTCGGCCCCAGGCTCCCCCATCACCATCCAGCAGCACCCACGCCTCATCCTGCCACAGGATGGCACCACCACATTCGATGATGAAGTGCCTCCGTTGTCGGCCATCTACCCTCTGAGTGGGTACGAAGACCCCGCGGTGGTGGCCAGCATTAATGGCATTCACAGTCAGCTCAGTGGAGAAGAGAGCTTGACGCTTAAAGATAAATCTTCACGAGGGAGCAGCAGCAGTAGCAGTTCCTCTGAAGGTGATGAGGAGGAGAGGGAGAGTGGTGGGGAGCCTCCAGGCCAGAAGGAGTCACTCTCAGGAGGGAAAAATGACTGTCCGCCTCCATCATACCCTCATACACAGGTGGATCAGGTACAACATCCGTGCGAGTGTCATGTGTGCAATCAGGGCAACGGGGACGGTAGCACCTCCGGCCTGAACTCCACCTGTCTGCCTACCAGCAGGCTGCATGCAGGGGGTCACCAGTTCTTCTCAGAGAAGACAGCAGCCCACCCTGCCCTCCACCTCTACCCCCACATCCACGGCCATCTACCCTTACACAACCTTTCCCACCTGCCCAGACCACTGCTGCCCACCCTCTACTCCACACCTCCGCTCACACACAGCAAGACTCTCCCTCCCACCCCCACATCCAGTCACACAGGTGGAAAGCAGCAAGTGTTCAACCCCACCCTCCCGGAGCACGTCTATCAGAGCTGTTTTAACACGGCAGGGGATTGGAACGGCTCTTTGCCATGTCCCTCGCTCAAACTAGAGAACCTCTGGGACACGCACATGATGAAGAACTGGAACCCCTCTGTGCTGCTCCAGGAGCCCCTACCTGGTCAGTTCCCAAGTGACATGCTGGGCCCTCCCCTTCCCGACGTGCCCCTCCTCTCCTCCAGTTTGGACCCCAATGTCAATCCCCACCCTGCCCCGGATGGCAAAGAAAAGAAGAACGGCGCCAAGAAAAAGTGTCTCTTCAACTACCAAGATGCCTTCATGGAGGCGAGCGAAGTGGTGATGGCCACTTCCTCTGCCACCTCCTCTGTCTCCAGTACCGCCACCACTGTCCAGTCAAATGAAGTTTTCCATAATTTAGGTAAAGAGGACCATAGACATCCCACTCCTGTTGCTCCTAGGAATAGTCCCACTAGTCTCACGTCTCTACCCCCTCTCAACGGAACCTCACATCCTTCTTCCCCCAACACACACCTACCCAGTATAAGCACCCAGTCCTTCCCAAAGACTGTAACTCCGCCTGCAGGCTACATGGATGTCCATCAGAGTCTGTGCTTGTCATCTGGCGAACAGCAAGTCACCCCGGGCGATGGTTTAGTCAGTGGTCCAAATAGCGTGTGCAGTGATCCAGACTGTGAGGGTCATCGCTGTGAAGGGAACGGAGGCTACGAGCACCAGCCATATGAAGGAGAGGAGAGCCAAGATGAGGACAGCAGCTCGGAGCACagctcctccacctccacctccaccaaTCAGAAAGAAGGAAAGTACTGTGACTGCTGCTACTGTGAATTCTTCGGTCACGGAGGGCCCCCCGCCGCACCCACCAGTAGGAACTATGCAGAGATGAGGGAGAAGTTGCGACTCCGGCTGACCAAGCGGAAGGAGGAGCAGCCTAAAAAAGAAGATTTGCTGCTGGAGCGGGATGGGGTGGAGGACCATCGCAAAGTAGAGGACCTGTTACAGTTCATCAACAGCGCAGACAATAAACCAACCAGTAGCTCCAAAGCAGCCAAACGTGCCCGTCACAAACAGAAGAAGatggaggagaaagCCCGTCTAGAGGCAGAGGCTCGGGAACTGGAAGAACAACAGCAACTTCTGAAGGAAGAGAGGAGGCGGCAGCAGGAAGAGGAGGTGGCACTGAAGCAGGAGCTGCTCCGTTTGCAGGAAATGCAGCAGTTGCGGGCAtctaagaagaaaaagaaagacaataaAATCAAAGATTTAACCAAGTCTGAAAACCCTTGTCTCGTTCCAACAACCAACAACCCTCAGCCTCTTCAGCAGACGGCACAGAGCGTTTTAGAAAAGAACATGCAGAACGGCAAAACGCAGCTACTACACAATCTCATCCGTCTCAGTCCTAAGGAGCCTCGTCTAGAACCTGAATGCCCCACCGGTGGGAAAAACGGCCCACTGCAACAGCCAAGCCCAAAGATTTGCAAAGAGAGACCTTCAGAGTGTCCTGCCCTCCACAATGGCACCCTCTCCCATCCAGAGTCCTCCCATACCAAGGTCAAACCCAAACAGCAAGTAAATAGCTCCAAACCCAACGGTGAGGCCACAAAGAGGCCAGCTGAGACATCCAAAGCTCCAGAGCCTCCCAAAGCCGGGAACGCAGCCAGCCCTCAAACTGACACCAAAGCCAAGCTGAAAGCTTCAGACGAGTCAGTGACCGAGATCAAGAGGGATGAGAGGACTAATGGGAAAAAGCCACAGAATGGAGGGAAAGATGAGAGGAACTCTCCTGTTATTGAATCTACAGCTTTAGACCCTCCTCAGCAGAACGGCAAAGTCCCAAACAACGAGTCCCCTCAGCCCAAAAGCAAAGCCAAGaagaataagaagaagaaagcgGATAAGATGAATAACTCAATAGATGATGTGTTTTTGCCCAAAGACATTGATTTGGACAGCGTAGACATGGACGAGACTGAACGCGAGGTGGAATATTTCAAAAGGTTCTGCTTGGACTCGGCACGACAGACAAGGCAGAGGTTGTCCATCAACTGGTCCAATTTTAGCTTGAAGAAGGCCACGTTTGCTGCCCACTAATGGGTCTTCCTTTCAAAAGACAATGGCAGGAATGGATAAGCGTTCCTCCggtttcttctctctctctctctcccatgtTTCTACAGACTGACTGCTGACCCCAGTGCTGCTATGCTTCAACTGCTCCTCCGGTCTACATTATCCATGCCGCCTTGCCTTGTCCTTGTTGCTGTGGGTTCCTCAAAGAACCCAAAACGGGCTTGTATTCCTGCAGTACttctggagagaaaaaaaaaaaagagcaaagtcaaaaaaaaaaaaaaaaaacaaccacaaaatGCTACTCTATAAGTTTATCCCTATTATTTTGGTTTccctttcttcttttaaaaagcGTGTGTGCTTTTTGTCAGTGAGTGGGCCGTTTCTCTTAGGTCTGTGCCATGTTCTGGGTTTTCTCTGTACATTAGGATGAAGGCACCGCTAAAGACATGCTTCAAGAAAAAagatgaatatgaaaaaaaagatcctTTTATTCAGATCAGCTGTGGCTTTGCTCACCTTTGCACCTAGCACTGCACTTCCTCACAACTCGTCAAGAGAACCGGACAGGTCAGCTTCATGTCATCGCCCCGAATCTCTCCCTTTATTGGGAGAACGGCTAATACTTGACAATGTTCacgtcgttttttttttcatttaaaaatgttcagtgtAACAACTATGTTCAagttaccattttatttttgtttcgttttttttttgtttttgtttttttttcctctttttccaaCTTGTACCAAGCTTGTATCAGAATACTTTCAGAATTGAATCGAAAAGAACAATACTCACACTATCAATCTGTTATAGAGTGTATATTGTATTAACACTGAAGCCGGACTGGCTACTTTTTAACATATtgttaagtaatattaaaatcttgtctttctttttgaaagatGGAATACAGTAGAGTGGCAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5942 lncRNA upstream 70706 18213305 ~ 18215084 (+) True G4166
TU5832 lncRNA upstream 387246 17896588 ~ 17898544 (+) False lsm6
TU5873 lncRNA upstream 538691 17745851 ~ 17747099 (+) True G4105
TU5867 lncRNA upstream 638328 17644218 ~ 17647462 (+) True G4099
TU5856 lncRNA upstream 678587 17583917 ~ 17607203 (+) False gab1
TU6140 lncRNA downstream 5238 18309934 ~ 18311341 (+) True G4296
TU6182 lncRNA downstream 293660 18598356 ~ 18599659 (+) True G4331
XR_006250297.1 lncRNA downstream 389473 18694169 ~ 18717089 (+) True LOC122340556
TU6214 lncRNA downstream 389487 18694183 ~ 18694573 (+) False LOC122340556
TU6197 lncRNA downstream 401513 18706209 ~ 18708429 (+) True G4345
XM_043243227.1 mRNA upstream 1146 18247251 ~ 18284644 (+) False dclk2a
XM_043243220.1 mRNA upstream 1146 18247253 ~ 18284644 (+) True dclk2a
XM_043243267.1 mRNA upstream 1146 18247253 ~ 18284644 (+) False dclk2a
XM_043243223.1 mRNA upstream 1146 18247254 ~ 18284644 (+) False dclk2a
XM_043243244.1 mRNA upstream 1146 18247254 ~ 18284644 (+) False dclk2a
XM_043237260.1 mRNA downstream 75 18304771 ~ 18326861 (+) True sparcl1
XM_043237245.1 mRNA downstream 15085 18319781 ~ 18326861 (+) False sparcl1
XM_043237253.1 mRNA downstream 15936 18320632 ~ 18326861 (+) False sparcl1
XM_043241787.1 mRNA downstream 126442 18431138 ~ 18577587 (+) False galntl6
XM_043241715.1 mRNA downstream 126444 18431140 ~ 18577587 (+) True galntl6
XR_006251260.1 other upstream 3029 18247250 ~ 18282761 (+) False dclk2a
XR_006251261.1 other upstream 3029 18247252 ~ 18282761 (+) False dclk2a
XR_006251846.1 other upstream 676949 17573121 ~ 17608841 (+) False gab1
TU5228 other upstream 2632409 15653093 ~ 15653381 (+) True G3647
TU5171 other upstream 2787110 15478098 ~ 15498680 (+) True G3599
unassigned_transcript_101 other downstream 274054 18578750 ~ 18578831 (+) True trnas-aga
TU6436 other downstream 1216388 19521084 ~ 19522399 (+) True G4528
unassigned_transcript_103 other downstream 1807746 20112442 ~ 20112514 (+) True trnak-cuu
TU7127 other downstream 3016769 21321465 ~ 21361275 (+) False LOC122348864
TU7152 other downstream 3286181 21590877 ~ 21620580 (+) False rnf24

Expression Profile