RNA id: XM_043237358.1


Basic Information

Item Value
RNA id XM_043237358.1
length 8304
RNA type mRNA
GC content 0.46
exon number 33
gene id limch1a
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 11446738 ~ 11489578 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGCCAGTCTCCCGTTCTTTAGAGAAGAGACAGGGAGGCTGATGCGCTCGCCTCGCTGCCCCTTACGCATTGGCTGAACGGAGACCTCTGCTGTTTTTTCAGCTTATATTTTTAGCAGCGGAGGTCGGACTCGTATTGCATCGCGCGTGGTAGAAAGTGCAGTTCATCCGCAGTGCTGCCGAGCGCCGGAGAACCGCAGTGTGCCGCGCGGGGGAACGCTCGAGCTCAGCACACTCAACGGGTCCGCTATTACGGCGAATGATCTGAAGTAAACGCGCGGGTCTGTTCGCGGAGCGCCGGATATCTCGTCTAGGCTGTCTTGCTAAGCCCTTGTTTTGGAAATGGCCAGTCCCGGAGACGATTCGGCTTCAAATGCCCCTCTGGATCAAGCCGAATCTGCTGACGCTGCCCCGGAACCAGCGTTTCAAGAGGCTCAAAAATGGATCGAGGCAGTGACGGGAAGAAGTTTCTGTGACAAGGACTTTAGAAGCGGCCTGGAGAACGGCATTCTGCTCTGCGAGTTGCTGAGTTCAATCAAACCAGGCCTTGTGAAAAAGATCAATAGACTTCCAACACCCATCGCAGGGCTGGATAATCTAACCATGTTTCTGAGAGGATGTGAAGAGCTGGGATTGAAGGGATCACAGCTGTTCGATCCCGGAGACCTGCAGGATACGTCGATACGAGCTAACTtaacGGGCTCTGACTGCTGCAGAAAGCTGAAGAATGTGCTCATAACCATATACTGGCTTGGTAAAGCTGCTAACAGCTGCACAACATACAACGGCCCCACACTCGACCTGAAAGAGTTTGAGGGGCTTCTTTCCATGATGCGAAAGgAGTGTGTTAATGAAGATTTAGACTCCCCTAAGCGCAGTATAAGGGACAGCGGTTACATTGACAGCTGGGAATCAGAGCGCTCTGATTCGCTGTCTCCTCCGAGGCATGGCCGTGATGATTCGTTTGACAGTCTCGACTCATTTGGCTCACGATCGCAGAACACACCCTCCCCGGACACAGTTATTCGCTGCAACAGTGATGACTCTGAAGGCGATGCTGGACATAGGAAATTGCCAGACGTACGTAAGGATGACATGTCTGCCCGCcgcgtgtcctacaaagagccTCGCGCAGCTCTACCCTTTAATCAGTATCTGCCAAACAAGAGCAACCAGACCAACTACCTTCCAGCTCccctgaggaagaggaggagcgaCCGAGaggaagacaggaggagtctgaGCAACTCCACATCTCCTGTAGGAGGAGAAAGACCTCTCAGACAAGAGTGCTTAGAAGTGTTAAAAGAGGAGGCTGTCGTGTCTCGAAGCCTTGCGATCCAGAAAAATTCCACCTGGGTGAATGAGGAAAGGGCGGAGTTTGAGGAGGCAGAGCttaagaaaataagaaagcTGGAAAAGGCGGGAATAAAAGTATTACCTGCCTCTGTGCGATATAGCAGTCCAATTGTGAACCCCGTGGAGGGCAGTAAAGCTAAAGCTCCTTCACCTGACATCATTCTGCGTCGTGACAATGAGTTCATGCGTGCCGCTGCTCCACAACAGTGGGATTCGAATGATGAGGACGATGATGAAGAGGCAGAACGAAAGGTTCCAGATGTCCGTAAGGATGATCTTGCTTCTCGCAGGGCACGAATGAATCAGTTTAAACCCAGCGTGGCACATCACTTCCTGCCAGGCTCTTGCAGCTGGAAGGACCGAGAAAAATGGGAGGGTATCAGACTGGCATCCCAGCATGCCGTGTTGGAGAGGATGGAGAAGATGGAACAGGAGAAAAGAAGTCAGGCTGACTCCGCCTCCCCGGAGGTGCCAATTATAATTCGCAAGGACAATCCTTTCCTAAATCCTGAAAAAGACAGGGGAAAAGAGGGGAATGAGGAAGATGAGAAAGAGCTAGAAGGGAAGatagttgttccaaacccactCAAAGATGATCTTGCCAGGAGACGGGCTGGGAGAGGGCCACACCCTCCCAAAGATCCTCATCAGTCATTGGCCCAGACTTCCATCACTCAGTCAGACCTGGAGACATGGCAGAGGCTCAAGATGAATACAGATAGCAGTGAGTCTGAATCCACTCCTGCTGAAGTGTCAATCATAACTCGCAAGGACAACCCCTTCCTGACCCCTGAGAAAGACAGTGAGAGCGAGCGGGAAAAGGAGGAGggaacagacagagagaaaggggCGAGGGTGGCGATGCCCAATGTAAAGACAGATGACCTGGCCAGAAGGCGGGGCCAAAGTGGGCCTGTCCCACAGAGGGACCCCCGGCAGTCATTGGCTCAAACAACCATCACTCAGTCAGACCTGGAGAAATGGCAAAGGCTCAAGATGAATACAGAGAGCAGTGGAGATGCAAACCCTGAGCCTCCTCCCATCATGCCCCCTGAACCTCCGAACCCTGTTATGTTTGACCTTAAAAGGCCTTTGACCTCCACCGAGCGCAGAGCGCTGGAGGAGGAACTGGCTCAGAAAGCAAAGGATGAGAGGGAGGACTatgaagaggatgaagaagaagaagaagaaaaagagaggcaACCAGATATAGAAAAGGATGACATGCTAGCTCGTAGAACAGGAGCATTTCCGAAGCCAGGAAGCGGGACTTCGTTTAACAGATTCCTCCCGCAGCCAGCATCCAAGAGAGAGGGTGCTACGGCAGCTTCCTTAGCGCAGAAAGGAACGAGTGGAGACAGAGATCTCCAATACTTTGAAAGAAGCATAAAGACAAAGAGATCCAAGATCGGACAGAGAAATGAACCAGTCGTTCCAGTTGCTGTAGTTACAGAAAAGAGCTCCGACATTGCACATTCTTCTACAACTAACGCCACTCGCTCTGACAAttacgatgatgatgatgatgatgaatgtgGGGATGATGATCAGCTGCCAGATTTTGAGAAGGATGACATGCTTTCGCGAAGAACCGGATCTTACCAAAAGCCAAGTGCAGCACAgtcttttaatgcttttctgccCAAACCTGGCGCTGTCAAACATAAAATCACTCCAGTCAGTGGATCGCAGTCGTACCTCAAGCCAAGAGAGCAAGAGACAGCCCCGTCTCCGGACAGCTTCACCCTTAGCTCTGTGACCCCGCCCCCAAGAGATGCTGAGGACACGCCTAGGAAGTGCCCTCAGATGATGGACAGGCAGGAGGCGGGCTCTGTGGGTGTGGTGGGACATGAAAGTCTTATTAAAGATGAGACTATTACCAAAAGCCCCTCCCCCAGACCTCACCAACCCCGTCGGCCCCTTTGGCAGGAAGATGATGATCTCCCCCCAATATTCAGAGCTACTAGTGTTTCTGACACAGAGAGTATGAGTTTGATTGACATGCGTGATGAAGaggatgagatggcctaccttcagccACACAGCCAATCACGACATGAGCACCTACACAACCAGTACAACAAACTCAAAGAGGAGGAGGACCAGTGGCAGGACGACTTGGCCCGCTGGAAGAATCGGAGGCGAAGTGCATCTCAAGATTTGAtcaaaaaggaagaagaaaggaAGATGATGGAGAAGCTAATGACGGCGGACGGAGGACCTGGCCATCGCAGGAAGAGTATCAAGACATACAAAGAAATCGTAGAGGAGAAaGAACGTAGGGAACAGGAGCTACATGAACAATATTGTAAGGCCTCCACCCCAGAAGAGAAAGCAGGTGTGCTTCAACGCTATGCTCTCCGTTTCACCATCAGCGATGCCATATTAGAGAAACTTCAGCTCCCCAAACTACCTTCTGCTGCTCCACCAATGCTCACGTCACCTCTTCATCAACCCGAGAAAAAGCCGACACGCACCACCTTGGCAGAAGCAGAGGCCCCAGAGCCTGAAAAAACACCCCAAACACCCCACAGTGTTCATATAGAGCCGAAGACTGCACAAAAACAGGCACTGGCACAGCCCAAATCCCCTGAACCATCGCCTTCTGAGACCTCCAAAGCTCCAGAAGTCCTGTCAGCACCCACACGAGTTCCTCCGGCTCCATCGAAGCCTGTACCCCTGATCACCCCAAAACCCTACAGCCAGCCCAAATTCAGCCAAGGCGTCCGCAAATCAGTGAAGAGCGATGGGCTGATACGTGTGAACGGTGACAGCactcagagagagagcagagagaagaATGATAGAGATTCTATGTCGAGTCCTAAAGTCAACTTCTCTTCCTCACCCCCAAAGCCTGACACGGAGAGTAAACAAAAAGAGGAGCTCGTTGTTTTAGAAGCCTCAGAACGCCAGCAAAATGTGCAGGTGTCCACTTCTGACAAGGAGAAGGAAGTCGTAAAGGAGGAAAAAGAGTGTTCTCTTAGACCTCAGCAAGAGAACAGCAAAGAAGACACTTCAGCCACACTGTCGCTCTCAGAACCAGAAGGAAAGCAGTCAGCGCCTGACGCGATGATGAAGCGCAGCTGCGTTGTCACAACGACCATAGTGACCGAACTCACTCAGACACATCCCGTCCCGCCGAACGAAGCGTCCAGCACCGAGCAGCTGGATTCAGTCCATAGTTCATGTGATGTGAGTTTAAGTGTGGAGTCAAGCAAGGCCGAGCAGACTTCATACTCGCTCTCAGTGACAGATTCCTCGCATACCTCTAATAGCTCTAGGTTACGCTGGGAGTTCTTCGCTCCAACAGAGGGGATCGACTACTCCATTGATTGCATTGAAACCCCAATGTTGAACCTTGCAAAAAGGGTTGATCACTGGACGTGGGACCCAAATGAAGAGCGTAGGCGACAGGAGAGGTGGCAGCAGGAGCAGGAACGCCTGCTGCAGgAGAAATATCAGCGAGAGCAAGAGAAGCTAAAGGAGGAGTGGGAGAGAGCTCAGAGAGAagtggaagaggaggagaggagacacCATGAAGAGGAAATGCGGATACTGGAGGAAACCGTGACCCCACTGACCCCTCGCACCTCAGCCTTAGCATCCAGCACGGTGACAGAGGCTCCGTCCCTCAGCCAGCCCTCAGCCCCACATGACACCATTGTCCTCTCTTTGGCTGACTGGGAAAGGAAACAGGAAATGTTGGAGAAACAGGCACAGACAAACCAGAGTAACGGACTCACACACAGCCCTGATCAAGTAATCACACCAGCTCAGCAGAACGGTCAGAGAACTGAACCTCAGGAGAGCCAAACAGCTACACCGCAGCTGCAGTTTATACAGGATGGCTCTTGGAGCTGTAAGACTAAAGACAGACAAGaagatttaaagaaaactgcCTCACTGGATCGTAAACAGAGTCCACCTCAGAGCCAGACCACAAGGatgaggagGACTGGGTcgtgtgaaaatgttttagggACACACCCATCAAAATCACCCACACCATCACAAGACACGCCACCTCCATCACCCAGCAGGTCAGTAAGTGGAAAGAAGCTTTGCTCCAGTTGTGCACATCCCTTGGGTAAAGGAGCAGCTATGATCATTGAGAGCTTGGGGTTGTACTTCCATATTCAGTGTTTTAAGTGTGGAATATGTAAAGGGTTACTTGGAGACACAAGTGCTGGAACTGACGTCAGAATTCGAAATGGACTTCTTAATTGTCAAGAATGCTACATAAAATCAAGAGCTGCTGGCCAGCCGACAACATTGTGATGCTTCTGGAATTCTGACAAAGAAATGGAACTGAAACCAGGTTAAAGCGACCCAGGACCATACCCAGGAAGAATGGATTTTACGTTCATACAACGTCTTCGACAGTTTTACTTACGGCACAATCAAGCACAGAGATTAAGTCAAAACTGGAATCATGGATACATGATGGGTTTTCCTCTGAACTTTCTTTGACCGACTTTGTGCTCgctgaaaaacaaatttatcGCTTACGTGATTAACAGTCCATGAGATATTACAGAGATTACAGTGAATTTGTTCGTACTGTTAGTTTTACACTTTAGAACGAGAATAACAGTAGCACTTTACCTCACGGTGGCCATGTTACACACATCTCAATAGCACAAAGGCCAAAAAACgtacatattttcataaatagaGATAAAGTCAAATGCCTGTGCCATTTACGTAAATAATATCTAGGTAGCTGCATACACTCTCACAGCACTTGACActtcaaaatatgttaataaatacaatataggTGCTAATATGTACCTCAAAGATACTGATTCTTTTTAGTGTATAAACGATATCAAAATCTAAAGATTCACTTGAATCAGAAAACCGATTTGAAGAGGCCAATGGTTAAGGCTCATTACATCATTCTgggaaaaaagcatgttttgccaTTGGCAGCCATTTAAAAGTAGAAATGTTTTCTGACTAAATAAGCAACTCAAGGCTGTAAACATGTAAACAGTTGGGGGGAGGGGTTTGTAATGgtcttttttttacaggaattaaagacttatgaaaaaaaatatggaagaaataagaaaaatagtcatttttgtagaaacaataagaaaaaatgagAGGAGTAAAATaagaacaatattttttttgtacagttatCAATCTGAGTTgttgcaaataatatttttatttcaaaatttgcCACCAATTTACCTACGTGAAAATGCAAGAGGGCGGCATAATTTGAAACTGGCAAAAATAAGGGTATTACCGTTggatgtttaacatttttactatattaaaaagattcaaatgatattataatataataaagcaaatcTTTTAGTATACTCACTACTGAGGGCATATAGCTAGAATCATCTACATTCACATACTTGTTTAGAGTATGATTTGGACCTAACACCAATGACGTGgaattattatcttattattattattatctacaAAATAGCTACATATTGACTGCATGTTGTATTACTAAATACACTGTAACATGGGCACTGTAAAGTAGAGTGAGACTGAATCCATTTCCATTGTGAGGAACATGAGGTAGCACAAATGTCCAGTTTTCATTTAAGaaaattttgcattaataataatctcaGTTTTTGTAAAGGTCTTGCAGGTATGCCACATAattcttaaatgttttactaaCAGACGACCGCGTTATTTGCGACTCTTAGGCCTAGCTGATTCGTCCCGATGCCTTAAATGACGACATGAAATGAATACAGATAAGATTGTCCATCaccttttttcatttctgttttgaaaacaCACGAACTGGAGtggttttgatttaaatgttctGTTCCTTCCTCCATTTCTCATTGCCTGTTTTATCTTGTTTGATCGGTGAGGGGTTTGATACTTTATTTGTGCAGTATTGTTTAACAGCATGTTGCTAATGGGTAGATCTTACATTtccatttgattatttttcaaaacctgttattaatatttacgtTTTTGCTCTGCAGTTGAATAGTAAGAAGATGCATGATCCCCGAAACTTTCCTTGATTACGCTTTACATTACAATGTCCATATCACACGTGCATTACGCGCTACTAAAAACGTAAAGTATCAACATTAACTGTGCAAAGCAGCTCCACATAATCGGAAGTATTTTATGCGATAACATATAAACACTGTAATGTAAACtgtaaccctttttttttttttttagtattccATAAATTGGGTTTTGTGTGTTCTGTTGCCTTTCTCTCTTCTGCAATGTTGTGCCTTAGAAATGCGCTCCTAGATAACGTCTAGTGTCGGCCACCCTTGCATCCAAAGCTTCAAGTTACCAATGTGTATTGGTGAGAGTATTATGCATATGCACTGAGCACTCTGCTTTTACCCTTGTACTTTATTCGAACACTATGAATGTGCGGACAAGAGATTTCAAAAAACGAAACAGACACCCTCTGTAAGCTTTTCACTCACTTCACGTGCATTTAGAGATTGCTCagtatatctatatttatctaAATCAACTGGAAAGGATTGCGGTCCTACGTGTCACCAAAATATCAAATTGAATAACGAGGACGGATTGCATTCAGCAACGCTAGCGTATACAATTCCTGCTTTTTTAACTTCTGCTTACGCTTTCTGTTAATATTTGAGATTAAAAGACATTGTCATTTAGAAGCGGGGGTTTTGATTGTtgcttgtttattgtttgttttattttgtgacattttaagaATATGAACCGAAACAGAAGTAAGGCAATAATTACTGGAAAGAGTAGCCAAGGATGAGTGAGATGTGTGTGACAAATAACTTcatattctgtatttattatgcCCTTTTAAAAATGAGCGATATAAGACAACCTACAAGACGCTGAAATGCAATGGCTTTTATAGCaagtgtatgtttttaaataaactgtaataaactattttaaatgca

Function

GO:

id name namespace
GO:0031032 actomyosin structure organization biological_process
GO:0008270 zinc ion binding molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3611 lncRNA upstream 61726 11383797 ~ 11385013 (+) True G2472
TU3594 lncRNA upstream 63352 11383031 ~ 11383387 (+) True G2468
TU3576 lncRNA upstream 95082 11350900 ~ 11351657 (+) True G2454
TU3571 lncRNA upstream 104991 11339295 ~ 11341748 (+) True G2449
TU3538 lncRNA upstream 131385 11310593 ~ 11315354 (+) True G2430
TU3657 lncRNA downstream 144348 11633926 ~ 11634160 (+) True G2511
TU3658 lncRNA downstream 145910 11635488 ~ 11635889 (+) True G2512
TU3664 lncRNA downstream 188505 11678083 ~ 11678450 (+) True G2518
TU3804 lncRNA downstream 229018 11718596 ~ 11719376 (+) False fbxo10
TU3813 lncRNA downstream 249406 11738984 ~ 11745961 (+) True G2623
XM_043250133.1 mRNA upstream 3274 11417077 ~ 11443465 (+) True rnf38
XM_043237533.1 mRNA upstream 45489 11396632 ~ 11401250 (+) True slc25a51a
XM_043247726.1 mRNA upstream 144254 11295411 ~ 11302485 (+) True si:dkey-192k22.2
XM_043236800.1 mRNA upstream 303732 11123080 ~ 11143007 (+) True LOC122342742
XM_043236779.1 mRNA upstream 324864 11104137 ~ 11121875 (+) True LOC122342727
XM_043244592.1 mRNA downstream 4711 11494289 ~ 11498109 (+) True exosc9
XM_043244668.1 mRNA downstream 4716 11494294 ~ 11498109 (+) False exosc9
XM_043235283.1 mRNA downstream 9005 11498583 ~ 11515686 (+) True ptpn9b
XM_043228466.1 mRNA downstream 109701 11599279 ~ 11607198 (+) True tyrp1b
XM_043235323.1 mRNA downstream 152941 11642519 ~ 11654574 (+) True clockb
unassigned_transcript_4 other upstream 136275 11310393 ~ 11310464 (+) True trnap-agg
TU3404 other upstream 465383 10845012 ~ 10981356 (+) False LOC122347856
TU3408 other upstream 465383 10845012 ~ 10981356 (+) False LOC122347856
TU3407 other upstream 465383 10915176 ~ 10981356 (+) False LOC122347856
XR_006251248.1 other upstream 957628 10483640 ~ 10489111 (+) False tlr3
TU3862 other downstream 348053 11837631 ~ 11840166 (+) False LOC122350793
XR_006251287.1 other downstream 1155101 12644679 ~ 12657595 (+) False kdm4c
XR_006251292.1 other downstream 1155101 12644679 ~ 12648403 (+) False kdm4c
TU4185 other downstream 1196667 12686245 ~ 12690270 (+) False dnah6
TU4187 other downstream 1223954 12713532 ~ 12717506 (+) False dnah6

Expression Profile