RNA id: XM_043237381.1


Basic Information

Item Value
RNA id XM_043237381.1
length 1555
RNA type mRNA
GC content 0.42
exon number 7
gene id xpa
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 7687375 ~ 7690927 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GATATCCAAAGAAGAAAAGCTCTTCACAATAGTGCACGCTCGTAAACATTAAACGTACACAGTGGAATGGTGCTTtcaagtttttattaaatttatccCATCTCGGACCAACCGTAAAAGCGAAAATAACGTTTCCGACTGGTCATGGACGTGCCAGAAGCCAGTGATTCTCAAGATGCATCGCTGGATGCCGCAAACCCTTCAAACAATTCCAACGAGACCTTAACACCGCACATGTTGGCCAAAATCGAAAGGAATAGACAACGGGCGTTAATGCTCAGGCAAGCCAGACTTGCAAACCGACCGTCATCAGCTCCAGAAGGAGCAACATGTGCCAAAGTGGCAAAAACTATAGACTCGGGTGCAGGCTTCTTTATTGAGGAGGAGACAACAGAGGATGAACAGCAAGAAAAGAGAGTGGTTGAGCAACCAGCCCCAGTGATGGAGCCTGATTATCTAATGTGTGAAGAGTGTCTAAAACCATTCATGGACTCTTATCTTAGCAACAGTTTTGATCTATCtgtgtgtgataaatgcagAGACAACGAAGTGAAGCACAAGCTAATATCTCGCTCAGAAGCCAAACAGAATTTCCTACTGAAGGATTGTGATCTGGATAAGAGGGAGCCGCCGCTGAGATTTATTCTCAGGAAAAATCCTCACAATCCTCGCTGGGGAGACATGAAACTCTACTTAAAAACACAGgTGGTAAAGCGCTCTCTGGAGGTGTGGGGCAGCGAGGAGGCTCTGGAGGAGGCCAAGGAGAGCAGAGAGGAGAACAGGGAGGTGCAAAAGCAGAAACGAtttaataaaaaggttaaaGagTTGAGGCGGGCCGTCAGGAGCAGTATGTTTAAGAAAGACACCAGCGTTCATCAGCATGTTTACGGCCCGGAGGAGCTGCTAAATGAAGAGGAAGATCTCTACAAGAAAGTGTGTCAAACATGTGGACATGAACTGACTTTTGAAAAGATGTAAACACGTCTTGGAGGTCTCACTGCTGTGGCCACTGTTCAGGGAAGAAGCAGGATCCAGATCCACATCAGCGAAAAGTAGTACTGATCTTACTTCTGGTCCTCAACACATTCTCTTTACTAGATGTCAGGTAACAAAACAGGTTTGCATCAGTTTCCGCTTTGGAGTATCTGAAACGCTTAACCAGCATAGAAAGTTTAGAAATGTCAgcattaatgaatgaaaattgcTCAAATGATCATTCCAGAATGATAGTtaactcaccctcgtgtcaatTAAGATGCATGAAGAAGTTTCCAGGATTTTTCTCTATAAAGTGGGCTTCAAATGGAGGTCCAAATTTCAGTTTCAGTGAATTAAGAAGGCTCTTATCTTTAAAAACGATCTGTGGTTTTctgaaaatatactttttaaaccACAAATGCTCATCTTAGTGCTTAGTGCATAAATTAGTGCttccaaatgattaattgcgattaattgcatccagaaaattgtttacatgtttatatgtatatatatgcatcttttcaaaatatatcctgaatgcttgtatttatatgtttataataaatgtaca

Function

GO:

id name namespace
GO:0006289 nucleotide-excision repair biological_process
GO:0005634 nucleus cellular_component
GO:0003684 damaged DNA binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K10847 XPA; DNA-repair protein complementing XP-A cells

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2478 lncRNA upstream 38751 7647889 ~ 7648624 (+) True G1698
TU2477 lncRNA upstream 59064 7624948 ~ 7628311 (+) True G1697
TU2489 lncRNA upstream 80875 7598267 ~ 7606500 (+) True G1706
TU2446 lncRNA upstream 105285 7513555 ~ 7582090 (+) True G1677
TU2436 lncRNA upstream 279170 7401131 ~ 7408205 (+) True LOC122330513
TU2522 lncRNA downstream 15958 7706885 ~ 7708131 (+) True G1732
TU2548 lncRNA downstream 114778 7805705 ~ 7806252 (+) True G1751
TU2549 lncRNA downstream 116424 7807351 ~ 7808014 (+) True G1752
TU2547 lncRNA downstream 117376 7808303 ~ 7809221 (+) True G1750
TU2550 lncRNA downstream 120056 7810983 ~ 7811354 (+) True G1753
XM_043237367.1 mRNA upstream 2774 7680870 ~ 7684601 (+) True saraf
XM_043245590.1 mRNA upstream 7003 7663335 ~ 7680372 (+) True slc24a2
XM_043245976.1 mRNA upstream 26843 7651722 ~ 7660532 (+) True tspan5b
XM_043245977.1 mRNA upstream 26843 7651722 ~ 7660532 (+) False tspan5b
XM_043250327.1 mRNA upstream 63559 7615995 ~ 7623816 (+) True snx8b
XM_043237401.1 mRNA downstream 5484 7696411 ~ 7704131 (+) True LOC122343081
XM_043248141.1 mRNA downstream 29338 7720265 ~ 7721420 (+) True spink4
XM_043241502.1 mRNA downstream 40861 7731788 ~ 7738618 (+) True stra6l
XM_043241474.1 mRNA downstream 47839 7738766 ~ 7749449 (+) True tdrd7a
XM_043241491.1 mRNA downstream 47839 7738766 ~ 7749449 (+) False tdrd7a
TU2312 other upstream 535155 7147137 ~ 7152220 (+) True mpc2a
XR_006251795.1 other upstream 828807 6846500 ~ 6858568 (+) False LOC122351737
TU2119 other upstream 841827 6711635 ~ 6845548 (+) True G1447
TU2148 other upstream 905234 6779618 ~ 6782141 (+) False rgs11
TU2062 other upstream 1150418 6533502 ~ 6536957 (+) True G1414
TU2530 other downstream 29392 7720319 ~ 7721425 (+) False spink4
unassigned_transcript_2 other downstream 771452 8462379 ~ 8462451 (+) True trnaa-agc
unassigned_transcript_3 other downstream 772345 8463272 ~ 8463344 (+) True trnaa-agc_1
TU2774 other downstream 915901 8606828 ~ 8607714 (+) False cxcl8a
TU2848 other downstream 1009513 8700440 ~ 8701372 (+) False stim2a

Expression Profile