RNA id: XM_043237513.1



Basic Information


Item Value
RNA id XM_043237513.1
length 5608
RNA type mRNA
GC content 0.51
exon number 52
gene id col17a1a
representative False

Chromosome Information


Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 24690982 ~ 24707177 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


TATAATCGCTTTTGGAGCACATCTTTATACAGAAGTACAGGAGCGCAACAAGAAGAATATGCACATTTCTCCCAAACAAGAGTCAAGTAGTTAACATGGAATGGACAAGCTAACCACAACCAAGATTGTGAAAGTAGAGGGGGGATCTGGAGGATCTGGAAAGGAaatccagaaacacacagaaactgTAACGACCACAAGACTGACATCTCTACCCCCAAAGGGTAACAGCAGCTCCGTGAGCAGCCAACAGGTACTGACCTCCGTAGTGAACAGCTCAGGCTCTGGAGGAGCTTCAGGAGGAGCCGTTCTGGTGGAGAAGAAGATCATCACCCAGAGCGGTGCTGAAGGAGGCGCGTCCAGAAGTTATGTCATATCCTcCTCTTCATCTGGAAGTTCAGCCAGCAGCAGTTCAGGAGCAGGATCTGTGATTGGTGGCTTAGAGGAAATATCTCGTGTAACCGGACCGATCAGTAGCTCTACAGTTAAAAGCTCTAGTTCTGCGGTTAAAAGCTCTAGCAGCGCCTCTACCTCCAGCACAGCAGTTGGCGGTTCCTCATCAGCAGGTGGAGGTCTTTCCTCTGGATACGGGTCCATCTCCTCCTCTGAGTTCGTGTCTGGGTCCTCAAGCGGTTCAGTCAGTGTTTCTGGAGGCAGTATGAACGTGTCCAGAGGTGGAGGAGGTGGTGCTGGTTCCTCTGCGGTCATGTCCGCCGGAGGAACTTCCAGCTCCGTGACCGTGACCAAGTTCAGCTCCTCGTCTCCCAGCGGGACACGGAAAGGTCTGAGCTACAGCACGGTTCCTCAAGAGAGGAAGACCAGTCTGAGCCTTCACACTGGAGGATATGAGGGGAGCTCCAGTGGAAATTCTTCCCCTGAATACATTAAGAAAGAATACGtttcgtCAAGCGTCGCCACCAGAGGACGCACTCAAACACGAGagAGCGAAATCAGAGCCAGATTGCAGAGTGCCTCGCCCTCAACTAGATGGACGGAGCTGGATGACGTGAAGAGGTTACTGAAGGGAAGTCGCTCCGGGAGCATCAGTCCACCTCGTTCTCCCACCAGCACTCTACCCATCCCCAAAAAAGCCAGCGTGGACACCCGTCATGAGAGCCAGTCAGGGTGTGACGGCACAGTCCTGGACGCGGGATTCAGCGGGTATTACACCAACCCAAACAACCTCAGTTACACCACACTGCAACCATCGTCGCCCACaggtgGCATGCAGAACAATATGACCTTCAGCTCATCTGCCCTCAGCAGCGCAGtTTATGGGATGCATAATAACCTGTCGACATCCGGTGGCGCTCTCATGATTAATGGAATTAGTGCTGGCCCAGTGTATGGGGGGCAGAAGAATATGGGCAGCGCTGGACTGGCCACCACTGTTACtaCCGTTCCCAGCAGCCCTATCACAGCTGAtgatgtgtttgtgagagatggCAAGTTTATTACGATTGGAAAAGAAAACGTAGCGGCTAAGAAAGAGACCGAGCGACTGATCATGTCCAAAAACACTGGAAAACAGTTCATCACTTCCACCACCAGTGCTGGAGCAGaTTCTGAGGATTCACTCAAGAGGGAGAAAAAGATGATCTCCAGCACTATTGACTCAACGGTTACTGCTTCCAGAGCCTCAACAAAAGACAAGGCAACCTATGCAGAGATCCGCACAGATGAGTGTGACGGCGCAGGACTAGGATTCTGTTCCTGCTGCTCGTGGTGGAAGTGGCTTCTTGCGCTGATTTTAGGTCTCCTCCTTCTACTCGGACTCCTCTGTGGTCTCATCGCACTGGGTGAGGAGGTCCGGAAGCTGAAGGCTCGTATGAACGCTATTGATGGTGGAGAAAAAGCAGCTTCTGCTCGAACCAGCCGTTTATCCGCAACTCCGGCTGTCAACATCATTGATCCGCTAGAGTCTTCATATGCTGAGCGCGTCCCTGGCGTCCGAGCCGATAACACTATAAACCTGGGTTCAGCTTCTGCTGCACAAGACCCTGTGGTTCTGCAGAGGACCATCCAACAGATTCTCAGATCCGAACTTCAATCAGACATCATCAGAGCTTCACTGGCCACTTCGCTTAAGGGTGACAGAGGAGAACCTGGGCCTAAAGGTGACCAAGGACCTCCTGGAGTgaaagGTGATACAGGGTTTCCTGGAATTCCAGGTCCTCCTGGTCTCATTGGTCACCCTGGACAGGAAGGTCCTCGAGGACCCAAAGGAAGTGCAGGTGAATCAGGAAATGATGGTTTACCTGGGCCGAGAGGTCGAGAGGGGCCAGCGGGTCCCAGAGGAGAACCAGGACCCTCAGGATTtggagagaaaggagaaaaagGCTCATCCGGTGATGTTGGTGCACCTGGGCTAGCAGGACCCCCAGGCCCTATGGGACCCAAAGGTGATGCAGGTGCACAAGGCATACCGGGTCTACAGGGAGCTCCCGGACCCCAAGGCTTCCGTGGAGATTCTGGTGATCCTGGACCCAAGGgtGACAAAGGACCTGCTGGACCAGCTGGAGTCAAAGGTGATCATGGAGAGAGAGGACCACGTGGTGCCACTGGTGAGCCGGGTCAGGTCGGACCAGCAGGGCCTCCTGGTGAGAAAGGTCCTAAAGGATCAGCAGGTGCTCCTGGGCCAGATGGTGTTAAAGGAATTCGAGGGGATCAAGGACCGATCGGTTTGCCTGGAGCTCGGGGACCCTCAGGACCTCCTGGAGATGCAGGAATACCagGCACACCAGGACTTCAAGGGCCGCCAGGTTTGCCAGGTACTCCGGGCCAGCCAGGAGCTAAagGTGACCCTGGTGAACCCGGAAGAATCATTTCTGCTGGCTCTAATACTAACACTGTGGGAGTACCTGGACCCCCTGGACCTGCTGGAGCTCCAGGTCCTGCTGGACCGCCTGGACTATCAGGCCCTATTGGTCCTGCTGGTCTTCCTGGTACACCCGGTTCAAAGGGGGATAAAGGGGACAGAGGAGAAGATGGGAAGCCTGGAGTCTCTGAAAGAGCAGAAAAGAAAGCTGCTTCTGAACCTGGCCCTCCTGGCCCACCTGGTCCACCCGGACCACCTGGGAATGATGGAAAACCAGgTGTCGGTCAACCTGGTCCTCCTGGTGAAAAAGGTGAACCGGGAAGCTTTGTACCCACTTCAGAAACCTTCTTTGCTGGACCACCTGGGCCTGCTGGACCTGTTGGACCAAAAGGATCACAAGGTGATATTGGCCCTCAAGGTTTCCCTGGCCAGCCTGGATTACCTGGAGAACCTGGAATTGGTATTCCCGGACAGCCAGGGTCACCAGGACCACGTGGAGAACAAGGTTCCGAGGGCCCACCGGGACCACAGGGACCACAAGGACCCATGGGTCCCATGGGGCCAGAAGGTCCAAAagGTGATGCCGGAGTCCCAGGGGCCCCTGGCATTCCAGGATATTCCTACGgTGGAGGATCCAGAAGCGCTCCGGGACCACCTGGTCCACCTGGACCCCCAGGGCCTCCCGGAGCACCCGGTTCATCAGATGGTGGCTCACCAGATGTTGTTCAGCAGATATCAGACTACCTCAGAAGTGAACCCATCAGAGATTACCTGAGCGGACCTCCAGGCCCACCTGGACCACCAGGACCTCCAGGATCAGGCTCTGAAGATTCGCTGGCTAACCGTGTTATTGAATACCTTCAAAGAGATGAGGTGAGGCAGTACCTGATCGGTCCTCCAGGTCCCCCAGGGCTCCCAGGTGCACCAAGTGGATATGGCTTTAACACTCAGGAAGTTGCTGGACGAGTGCTAAGTCTGATGAACGATGGTGATTTCAGAGGTCTGCCAGGACCTCCTGGCCCCCCAGGACCTCAAGGACCACCAGGAAGCGCTGGAGGAATAGTGTCTTACGCCGCTAATGAAAATCAACAGCAAATCCGTGCAGAGCCTCAGGAGTATATCAAAAGTCACCCAAGCCCTGAAGAGAATTTGGATTACGCAGTCATCGCTAAAAAGCTTTCAGATTACACCAAGTCTCTTGGCCTTGTAGATTTCCAGAATGGTCCACACGGTGTAGAATTTGGACCCCGTGGAGCCACTGGATTCCCTGGACCCTCTGGAGCCCCTGGATTACCTGGACCGAAAGGAAACCGTGGAGCCCCTGGACCTCCAGGAATCAGTGTAGAATTTTCTTCCTCCAATATGACAGCGATCATGGACTACATCAGAGAGAACCATATGATTGGACCACCAGGGCAGAAAGGGGATCTAGGATACCCTGGACCACCAGGACTGAGAGGACTCGTAGGTATACGAGGTCAGCCAGGCTTTCCAGGCAACCCAGGAATGAAAGGACAAAAGGGAGAGAGGGGTGATGCTTCGTATGTCAGGCGCAGGAAAAGGAGGAGCACAATTGTTTAGCTAGCGTGCCTTTAGCAGCTAAGACATGTACATATTTAGTCTTTACtttagatttgattttaaaaagctataTTTACGTGATCAAATTCATTCACTTTATGATGCCAGTTTCTAgtatttcataatgtttttttttttttttttttttgcatgaatggTTTACATGTAATCTGGGGGCGTGctttaaattgtactttttgtcattttctgctGTTAAAATGCTTGCGTCAGACTCAAACGTGATTTAAATTgagaataaagatttttttttttttgtaaaatcgTGGCTTGCAGTAACCTTCAGGAACAGACACGTGTTCaccacaaatgttttaattacagcagCTTCCTATAAATCACAACGACTTGATCTTTGACACAAACACAGTACAAACTGTTATGCTGCTAACTTTACCTCACGAGTTGAAAATGCTTGGAAAAAATGAAGACGACCTCAAAATCAAATGCAAACAGGCATAGTGAACGAAACGAGCGAGGACTTCCTTTACCAGAAGGTGCACAGCACTCTCTGTACAAATCAAACACATACAGCGATGCTCTCAGGCGATCACAATGACAATCTGCCTTTTTtcacagatttaaaatgttgctttgatCGTTTGATCGACGGCGCGAATGTAAATGCAGTAAACACGTTTCAAACTAAGCTGAGATGAAAAGTATctattactaataaaatgtgCTACGATATACAAGAATAAAAGAACACCTGACTGGTTAAAGTACATCGGTTTACAGGACAAACCCCTCCTTTGACTGAAAAGTACACTAACGCACTCTAGAGATGTCCGAGAGAACTAAAACGCACGTAATCGAAAAACCATTTGGTGTTTTTGAGGAGCATGAGTAGCATGGACAATATGCAGAAGCTCTCTTGCTTTGAGGTTCACAGATAATAATGATGGTGGAGGCGATTTCGTTCGGCTGCATGTTCACATTGCATAGCAGTGCACGCGCAAACGCGCTTTAAACCACAGTGGCGTCAGGATATTTGCATACAGTGTGGCTGATATGTTACAACACCTCCAAGAACACCTCCATCAAAAATGTTATCACCATTGGTGGTTAAATCATTCGCTTAGTTTAGTGCAAGTCAATTAGCCCGAAGCTGAACAGTCATTTCATGTAAGCAGATCTAATCCTTAAAAACGCTACAGTAAACCACATCAGTAAGACACTGAttcgaaa

Function


GO:

id name namespace
GO:0008544 epidermis development biological_process

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU8762 lncRNA downstream 1286 24689178 ~ 24689696 (-) True G6019
TU8402 lncRNA downstream 129529 24560839 ~ 24561453 (-) True G5780
TU8387 lncRNA downstream 139102 24551583 ~ 24551880 (-) True G5769
TU8380 lncRNA downstream 182515 24503083 ~ 24508467 (-) True LOC122362739
XR_006253177.1 lncRNA downstream 182957 24502973 ~ 24508025 (-) False LOC122362739
TU8806 lncRNA upstream 106136 24813313 ~ 24813523 (-) True G6049
TU8809 lncRNA upstream 133737 24840914 ~ 24863374 (-) False LOC122345669
XR_006251020.1 lncRNA upstream 134584 24841761 ~ 24863087 (-) False LOC122345669
TU8811 lncRNA upstream 137524 24844701 ~ 24863374 (-) True LOC122345669
TU8810 lncRNA upstream 153453 24860630 ~ 24863374 (-) False LOC122345669
XM_043237562.1 mRNA downstream 16437 24665838 ~ 24674545 (-) False tsga10
XM_043237553.1 mRNA downstream 16437 24665838 ~ 24674545 (-) True tsga10
XM_043242296.1 mRNA downstream 25592 24652160 ~ 24665390 (-) False cracdlb
XM_043242032.1 mRNA downstream 25592 24652160 ~ 24665390 (-) True cracdlb
XM_043242208.1 mRNA downstream 31879 24652160 ~ 24659103 (-) False cracdlb
XM_043229035.1 mRNA upstream 36457 24743634 ~ 24784452 (-) True fam13a
XM_043229390.1 mRNA upstream 36457 24743634 ~ 24780895 (-) False fam13a
XM_043229117.1 mRNA upstream 36457 24743634 ~ 24780895 (-) False fam13a
XM_043229188.1 mRNA upstream 36457 24743634 ~ 24780895 (-) False fam13a
XM_043229412.1 mRNA upstream 36457 24743634 ~ 24780895 (-) False fam13a
TU8153 other downstream 518920 24167112 ~ 24172062 (-) False G5624
TU8816 other upstream 161264 24868441 ~ 24870465 (-) True G6056
TU8851 other upstream 265314 24972491 ~ 24973371 (-) True G6073
TU8856 other upstream 281599 24988776 ~ 24993345 (-) True G6074
TU8865 other upstream 287306 24994483 ~ 24995820 (-) True G6078
TU8873 other upstream 319486 25026663 ~ 25028129 (-) False LOC122349000

Expression Profile