RNA id: XM_043237937.1


Basic Information

Item Value
RNA id XM_043237937.1
length 1781
RNA type mRNA
GC content 0.49
exon number 11
gene id LOC122343461
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 1584612 ~ 1591930 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTTCCTCGGGCCTCGAGCGCTCCCGGCTTCACTGTGAACTCAAGACGGGACCAGAGCGGCTCGGAAAACACCAGAAGGAATCTAGAAGACTGAGGACTCGgtTTTCTGAGAGGAAATGCATATTCTTGGGactactttcttttttattacactCCTGAAAGCCTGTCTAGGCGTCTACCTCCAGTGGCCGGAGGCCGAGGTGTACATCGGAGAGAGCGTGATCTTGTCCTGCAACGGTTCGGGGTTCTCTGGGGGAGAGCTGTATGTTCGCTGGGAGGCGACGGGCAAAGACGTGATCACCCTGCGAGGGGACGCCGTCTCGGTCGGGAGAGGCTTCGAAGGTCGCGTGAACTTCCTCAGAGATCCGGCGGAGTCGGGGGACTTTTCCCTCGTTCTGTCAGACGTGATGCTCAACGATGGAGAAGTATACGAATGTCTCTGGGAGGGAATAAAACCCATTTGCTTCGTGGAACTATACGTGTTGACACCAGCGTTTTTTAACCACAACGTTGCCGTCTTCGAGGGCGACACCATCACTTTGGACTGCTTCGGAAACATCCCTAAAAACAAACCCTGGGAAGACATTTATGTGCAGTGGCTGAAGGACGGCAGAGAGATCCTGCGCTTCGGTTCGGGGGAGACGAGCGCCGCGGAGCACAGAGTCCTGAGGTTACCGGACAAACACGAGCTCGGCCGCGGCGTCTTCTCTCTGAGCGTCCCTTCGGTCCGTGCTTCAGACTCCGGCGTCTATGAGTGCCGCTACAAGAGAACCCACTATGAAGAGCTGCAGAACGGGTTCCCAGAGAAACTCACGCTCATGGTTTGGGctgtatcTTCTGtctcagtgtctctctctcagtctcaggAGAGTAGTAGTGTACTGGTTTGGACTCAGACTGAAAGCAGCGGGTCTCTGCCAACACTGACATACACTGAGAGAGACGGAGCGACGACAGAGACCTCAGTAACTAAGACAGCCACTCACTCTGtGACGACAGACCCGTCAGTCACAGACACAGAGTTTTCTCTTCTAGTGAAAGATACTGATTCTGTGACCACAGATATATCCGTTCCAGCAGACACTGCTTCAGTGATGACCGACCCGTCAGTCCCAGACACAGGCACCGGTTCTGGTCAGCGGGATCCTCTGGAGCTCCGGTCGGACGAGGTTCCCTGGATCCGCGTCGCTCTCATCAGCGGCGTGCTGCTCGTCACGGCCGTCGTTCTGGCTTTATTACTGGTGTTTGAAAGAATCTGAGTCGATGGGAGAGAGTACACTACTGAAAGGATGCAAGTTCCACACATTTCCAGGCAAACGGCTCGTTTTGTTCCTGAAACAGACCGAAATGGGGACGGTTTGTAATGCGCTTTATATCAACCTCCTGAACATGGTGCTATCTATAGCCGTAAACGGTGCGTTTGTGCATTTATGTTCTTTAAGATGCATGAGACGACTTAATGTTATGTGACATTATGATTAGAAGAACAAATGTGACAATGGACTCAAAAATGGTTTCCGTTCTCCATTGACGTATTTGCTTCAAGCGTAAACCcaatttaatgtcattttacatCTCAAGTAAAATTTAAGAACGATTAgatgtttataaatgttaaaacaaaataccaattttttttttttgcaccacaTGCAACATTAATGCCACTGCTTCTCAAATTTAAAGCTTTAAGGATGAATTAATAACCCTGattataaactacatttttactaaacttggctaaaatagaaaattaggaacatgctttttttgcagtttat

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU396 lncRNA upstream 98969 1485146 ~ 1485643 (+) True G270
TU321 lncRNA upstream 116481 1467485 ~ 1468131 (+) True G227
XR_006251676.1 lncRNA upstream 181997 1357834 ~ 1402615 (+) True LOC122350990
TU469 lncRNA downstream 313722 1905652 ~ 1905963 (+) True G312
TU476 lncRNA downstream 338727 1930657 ~ 1991767 (+) True G318
TU478 lncRNA downstream 339886 1931816 ~ 1933144 (+) True G319
TU480 lncRNA downstream 344243 1936173 ~ 1936647 (+) True G320
TU481 lncRNA downstream 344243 1936173 ~ 1951320 (+) False G320
XM_043242418.1 mRNA upstream 1200 1574618 ~ 1583412 (+) True LOC122347221
XM_043245929.1 mRNA upstream 13724 1525107 ~ 1570888 (+) False runx1
XM_043245920.1 mRNA upstream 13724 1525108 ~ 1570888 (+) False runx1
XM_043245937.1 mRNA upstream 13724 1552149 ~ 1570888 (+) True runx1
XM_043245945.1 mRNA upstream 13724 1552149 ~ 1570888 (+) False runx1
XM_043246036.1 mRNA downstream 120112 1712042 ~ 1893196 (+) True zgc:152904
XM_043246053.1 mRNA downstream 120112 1712042 ~ 1893196 (+) False zgc:152904
XM_043246046.1 mRNA downstream 120112 1712042 ~ 1893196 (+) False zgc:152904
XM_043239643.1 mRNA downstream 345520 1937450 ~ 1941621 (+) True LOC122345473
XM_043239653.1 mRNA downstream 345520 1937450 ~ 1941621 (+) False LOC122345473
TU311 other upstream 142946 1439073 ~ 1441666 (+) True LOC122327253
TU309 other upstream 143173 1439073 ~ 1441439 (+) False LOC122327253
TU310 other upstream 143173 1439073 ~ 1441439 (+) False LOC122327253
TU190 other upstream 463891 1119719 ~ 1120721 (+) True G136
TU24 other upstream 1406412 177716 ~ 178200 (+) True G10
TU616 other downstream 593929 2185859 ~ 2192464 (+) True cyyr1
TU731 other downstream 891743 2483673 ~ 2485988 (+) False grtp1a
TU718 other downstream 919791 2511721 ~ 2513859 (+) False pcid2
TU696 other downstream 932595 2524525 ~ 2527244 (+) True G474
TU717 other downstream 1003001 2594931 ~ 2596302 (+) True G482

Expression Profile