RNA id: XM_043238059.1


Basic Information

Item Value
RNA id XM_043238059.1
length 1543
RNA type mRNA
GC content 0.49
exon number 9
gene id glrba
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 12368875 ~ 12389717 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CATGCCCTCATTTAGTTCTGTGGGCTCAGTGTAAATCTGTTAAGAGAGACGGCTGTGATTTAATGTGACACAAAGGACGAATCGAGGTGAGGAGGAGCTGTTTCCAAAACCACTAACGTCTCGTGAATTCTTAAGCCTCTCTCGCGTAGTACACTCAGGGATCGCGGCTTTCTTTAATTCAAAACGCTTTCATTTGTTCAGCGCTTGATTTCGCACAAGACCGGTCCTTTACATCTCCCGAGTCACTTAATGCTAGGCTGTAGTCGCGCAGTTAGGTTTCGTAAGTTAAACCCAGGCGGAGAAAGTGACGCCGGTGCGGGACAGCGCGTGCTTCATCGCGCGAGagcacagcagcagcagcagcagcagcctcaCTGCAGCGGGACAGGTGCATCCACGCGCAATCCGTCACACACACCGAAACTGAGCCCGAGCGTGGATGTGCATGCAGTGACAGACATGTCGGTTGGCTGGAAGCGTGCTTGAGCGGGGGGACGCTAACATCAGCTGTGTTTTCTTCATGAGGTGTGCAGTCATGGTTCTCAAAGGGCTGAtcttgttgttgctgctggtaCAGTTCTCTGCAGAGAGCACTGCCAAAGAAGGAGGCAAACCCAAGAAGGGAAAAAAGGGCAAGCAAGTCATCTGTCCCTCTCAGTTATCAGCAGAGGACTTGGACAGAGTCCCAGCCAACTCAACCAGCAACATACTGAACCGTTTGTTGATGACATATGATTCACGAATACGACCAAACTTCAAAGGCATCCCAGTGGAGGATAAGGTGAACATCTTCATCAACAGCTTTGGGTCGATCCAGGAGACCACAatgGATTACCGTGTTAATATATTCCTGCGCCAGCGCTGGAATGACCCACGGCTACGGTTACCAACTGATTTTAAGTCAGATGCATTGACCGTTGATCCAAAAATGTTCCAGTGCCTGTGGAAACCAGATCTGTTTTTCGccaatgaaaaaaatgctaattttcaCGACGTTACACAGGAAAACATACTCTTGTTCATTTTCCGCAATGGAGATGTCCTTATCAGCATGAGGTTGTCTGTCACTCTTTCTTGCCCTCTGGATCTAACACTGTTTCCTATGGACACCCAGCTCTGCAAGATGCAGTTAGAGAGCTttggcTATACCACGAAGGATCTGGTGTTTATGTGGCAGTCGGGAGACCCTGTTCAGATGGATGAGATTGCTTTGCCACAGTTTGATGTAAAGCAAGAGGACATTGAGTATGGAAATTGCACAAAGTTCTACCCGGGAACAGGTTATTATACTTGTGTGGAAGTCATCTTCACTCTCAGGAGGCAAGTGGGCTTTTATATGATGGGTGTTTATGCTCCCACCCTGCTGATTGTCGTCCTATCATGGCTGTCCTTCTGGATCAACCCAGACGCCAGTGCAGCTCGAGTCCCCTTAGGCTCCACCTCTCCTTCATTCCTCTCTCTCATTTGTTCATCTGTCCATTCCAGGGCTGGCTGTTACTCCCAGGTCAGTTTTAACATGTTGGCTTAAGTTCAGGGGACAGTA

Function

GO:

id name namespace
GO:1902476 chloride transmembrane transport biological_process
GO:0034613 cellular protein localization biological_process
GO:0045211 postsynaptic membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016934 extracellularly glycine-gated chloride channel activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4096 lncRNA downstream 37059 12335352 ~ 12336759 (-) True G2829
TU4090 lncRNA downstream 83712 12289829 ~ 12290106 (-) True G2826
TU3987 lncRNA downstream 223102 12142906 ~ 12150716 (-) True G2750
TU3989 lncRNA downstream 275534 12097910 ~ 12098284 (-) False ugt8
TU3979 lncRNA downstream 444822 11927551 ~ 11928996 (-) True G2742
TU4112 lncRNA upstream 36496 12426213 ~ 12442443 (-) True G2837
TU4113 lncRNA upstream 37450 12427167 ~ 12443813 (-) False LOC122348535
TU4114 lncRNA upstream 46200 12435917 ~ 12441497 (-) True G2839
XR_006251338.1 lncRNA upstream 52774 12442491 ~ 12443883 (-) True LOC122348535
TU4116 lncRNA upstream 64514 12454231 ~ 12454769 (-) True G2841
XM_043238055.1 mRNA downstream 7710 12339733 ~ 12366108 (-) False gria2a
XM_043238054.1 mRNA downstream 7713 12339733 ~ 12366105 (-) False gria2a
XM_043238053.1 mRNA downstream 7714 12337962 ~ 12366104 (-) True gria2a
XM_043238052.1 mRNA downstream 7823 12337962 ~ 12365995 (-) False gria2a
XM_043238056.1 mRNA downstream 7823 12337962 ~ 12365995 (-) False gria2a
XM_043251215.1 mRNA upstream 1227 12390944 ~ 12406555 (-) True wdr19
XM_043243043.1 mRNA upstream 17652 12407369 ~ 12419280 (-) True ncapd3
XM_043236977.1 mRNA upstream 40013 12429730 ~ 12434898 (-) True LOC122342838
XM_043236985.1 mRNA upstream 48105 12437822 ~ 12440445 (-) True LOC122342847
XM_043236997.1 mRNA upstream 87801 12477518 ~ 12494325 (-) True adamtsl7
XR_006250806.1 other downstream 7823 12341735 ~ 12365995 (-) False gria2a
XR_006250810.1 other downstream 7823 12343449 ~ 12365995 (-) False gria2a
TU3761 other downstream 860985 11510439 ~ 11512833 (-) True G2584
unassigned_transcript_5 other downstream 875460 11498285 ~ 11498358 (-) True trnai-aau
TU3498 other downstream 1319877 11053154 ~ 11053941 (-) True G2401
XR_006251305.1 other upstream 514482 12904199 ~ 12926482 (-) False prom1b
XR_006251304.1 other upstream 514482 12904199 ~ 12926482 (-) True prom1b
TU4379 other upstream 764769 13154486 ~ 13159246 (-) False smim14
unassigned_transcript_6 other upstream 828677 13218394 ~ 13218468 (-) True trnar-ucg
unassigned_transcript_7 other upstream 829579 13219296 ~ 13219368 (-) True trnar-ucg_1

Expression Profile