RNA id: XR_006250838.1


Basic Information

Item Value
RNA id XR_006250838.1
length 4552
RNA type transcript
GC content 0.47
exon number 38
gene id LOC122343833
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 27240324 ~ 27255067 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCGCTTCTTGCTTAATGCAGCCAGATGCCGAACACGATGCATGTGGAGATAGTGACGCTGACTGCCATCATTCTTGGCTTCCCTTTGCTTACGTTATGTGACCCACTGTATGTTCTGTCAGCTCCTAACTTGCTGAGGGTGGGTTCCTCAGAGAACGTGTTTGTGGAGGCTCAGGATTACTCTGGAGGAAACCTGAACGTGAGGATCATAGTAAAGAACCACCCAAAACGAGACAAGGAGATAATGTCTAAATCGGTGACACTGACTGCAGCCAACAATTTCCAGATCCTTGCAGATATAAAGAttcctgatgatcagaagttcTTCTCTGACGATCCTCTGGAGAAGCAGTATGTGTATCTACAAGCTCGGTTTCCAACTACCACTTTGGAGAAAGTGGTCATGGTCTCATTCCAGTCTggatatatatttgtacaaacAGACAAGCCCCTCTACACACCTTCTAGCACAGTTAAATACAGGATCTTCTCATTAACTCCTGATCAACATCCATTTGATGGAGTTTCCATCTCGGTCGATATCATGAATCCTCAAGGCATAACACTGGACAGAGATCAGTTCCAACCAAGGCGAGGCATCAGGACCGAAAACTTTGCTTTACCCGAACTTGCCAGCTCTGGGATTTGGAAGTTGATCGCaaagtacacaaacacaccgCAAAAGAACTTCACGACTGAATTTGAAGTCATGGAATACGtgCTGCCGAGCTTTGAAGTGACCTTAAATTCACGCAAACCGTTCTTCTATGTGAATGAGCGCTCTTTAACAGTAGACATATCAGCTAAATACCTGTTTGGTAATAAGGTGACAGGAACTGCATTTGTGGTGTTCGGCATTATAGACAATGAGAAGAAGATCAGCATCGCTGCCTCACTGCAAAAGGTTCAGATAAATGATGGAGAAGGAGAGGCAGAGCTGACTAGAAACATGATCAAGGAGAACTTCCCAGACATCCAGCAGCTAGTTGGGAAATCCCTTTACATTTCAGCCAGTGTTGTAACAGAAACTGgaagtGAAATGGTAGAAGCACACAAGAGAGGCATTCAGATTGTGACGTCTCCGTACACCATCCACTTCAAAAGAACACCACACTTCTTCAAACCTGGGATGTCCTTCGATGTCTcgGTCTATGTAACAAATCCTGACCAAACTCCTTCTAAAAATGTGGAAGTGGAGGTAAATCCTggaggggtcagaggtcaaacaaGAGCCAATGGCATCGCAAAAGTTACTGTCAACACTCCGGGAGGATCTTCCAAACTGGAGATCACTGCAAAGACCAAAGACCCACAATTAAGAAACGATCAGCAGGCAGTGAAGAAGATGATAGCTCAGGCCTACCAGCCCAAAGACGACTCCAAAAACTACCTGCACATCGGCATTGATGCTACAGAGCTTCAGATCGGTGATCAAATGAAAGTCAATTTAAATCTAGGAAACAGCCATGTTAAAAACCAGGATTTCACCTACATGATCTTAAGTAAAGGTCAGATCGTTCAAGTGGACAGGTTTAAGATGAAAGGACAAGCTCTTGTGAGTCTGTCTCTGCCTGTAACCAAAGTCATGGTGCCGTCCTTCCGGTTTGTGGCGTATTATCATGTGGGCTCGTCTGAGGTGGTGTCCGATTCAGTCTGGGTCAACATGAAGGACACGTGCATGGGAACGCTCAAAGTTGAGGTGAAGGACCCGACACAATATGGCCCAGGAGATCAGCTCAGCTTGAAAATCACTGGAGACCCTGGAGCTAGAGTCGGGCTGGTCGCTGTAGATAAGGGGGTCTATGTCCTTAATAACAAGAACAGAATCACTCAGACAAAGATCTGGGACGTCGTAGAGAAGCATGACACCGGCTGTACGGCAGGAGGAGGAAGGAACTGTATGGGGGTTTTCACCGATGCAGGTCTGATGTTTGCGTCCAGCACTGCAGGAGGAACCAACGTCAGAACAAATAAAGAGTGCCCCGTCCCATCAAAGAGAAAACGCAGAGCACAGAGCCTTTTGCAGGTCACCACTACACTGGCTGGTCAGTTCTCCGGCGAACAAAAGAAGTGCTGTGTGGATGGGCTGAAAGACGTTAAACTTGGGTACAGCTGTGAACGTCGAGCCTCATTCATCATGGACGGAGATGAATGTATTCAGGCCTTCCTGCGCTGCTGCAAGGAGTTGAAACGCCATACAGATGCCTTCGCAGAGAACGAGTTTCTTCTGGCCCGCAGTGAAGATGATGATTTTGATGAGGAACTAGGAGAAGTGATGGTGCGTACACAGTTTCCTGAAAGCTGGCTTTGGGAGGAGATTGATCTTCCTCCTTGCCCACCGAACCAAGTGTGTGCTGAAACATCCACCTTAAGAACTGGAATATTCCTGAAAGATTCCATCACAACCTGGCAGATCACAGCCATCAGCCTGTCCCAGAGCCTTGGAATGTGTGTGGCTGATCCTTATGAGATCATTGtcaagaaagatttttttatcgACTTGAAGGTGCCTTATGCAGCGGTGCGCAATGAACAACTGGAAATAAAGGCTATTCTTCACAATTACAGCAATCAGAAACAGAAAACAAACATTCGGTTTAAGACGTCGGAGGGTATTTGCAGCAGTgccagcaaaaaaaagaaaggcaggGTAACCGTTCCTGTTGGCTCCATGTCCTCCAGAGCCGTCCCTTTCATCATCATCCCCATGGATCTGAAAGAGCAGTGGATCGAAGTGGAAGCATACAGCTCGAATCGCAACGACGCTATTAGAAAGAAACTGAAGGTGGTGcCTGAAGGTGTGCTAACCGAAGTCCAAGAGAGAATTATAGAGATCAACCCATCCAAGCATCCAGGCAGCTCGCAGGTCGTGTCTATGAGGAGCGACATCCCACGCCGAAGGGCTCCAAACACACCTGCTAGCACAGTGATCACGGTGATAGGTGAAGAGATCACTCAGACAATCGAGCAGGCCATCAGTGGACATTTTATGGGTCAGCTCATTGTTCAGCCCTATGGATGTGGAGAGCAGAACATGATCCATGTGACTCTTCCTGTCATTGCCACTCATTACCTGGACAGCACAAAGCAGTGGGAGGCTGTTGGCATGGAGCGGCGTAATGAAGCCGTCAAGCACATTAACACAGGTTATAAGCTGGAGTTGACCTTCCGTAAAGCCGATGGGTCATACGGTGCCTGGTTACACGTGCCGAGTAGCACATGGCTGACGGCTTATGTGGCCAAAGTATTCGCGATGGCCAGTGATCTGATTGTCGTAGAGGAGCATGTGATCTGCAGCGCCCTCGACTGGCTGGccacaaaaaaacagctgtcaGACGGCACGTTTAAAGAACATGCGCCTGTGTATCACAGCGAGATGGTTGGTAACGTACGTGGAAAAGACGCAGATGCCTCTCTGACTGCATTCGTCCTGATCGCCATGCAGGAAGGAAGAAAGATCTGTGCTGGAGCTAATATTCAGAACAGTATAAAAAGAGCCACCGATTACCTGCTGCTGAGAGTTCACAGCCTGACCAGCACTTACGCTGTCACTATAACGTCTTATGCTTTGGCCCACGCTGGAAGACTCAATAAAGACATCTTGAAGAGTCATTCTACTAAAAGCAAAGATGGAATATTTTGGCAAGTTCCTGGCCAGCACCATCACTCTCTAGAAGCCACGGGTTACGCAGTGCTTGCCCTGGTGATGGCAAAGGATTTCGAGAGTGCTGGACTGGCGGTGCGTTGGCTGGGAAAGCAACAATCCCGTTATGGGGGTTACGGCACAACACAGGCAACGATCATGGTCTTCCAAGCCGTGGCTGAATACCGCATTCGGGTTAAGAAGGCAGACATTAATTTGGACCTGGAGATGGCTGTGCAAGAGAGAAAAGGGAAAACCAAAATTGCTTTGAGACAATCAAGCAAACAACGTACAGACAAGTTTGACATCACGAAGAGCTTCAATCTCACAGCTCGTGGGACGGGGGTGGCCACGCTCTCCgtcttttctgtcttttatgcTCTGCCCGAAGAGAAAGACTACGAATGTAATGCATTTGATCTCAGTGTGCAGATGGAGAAAGAGTCTGCAGTAACCTACGATAAAGCCTCTGATAGTTACCTGATCAAGATTGAATACATTTTCAAAGACAAGTTAAGAAGCTCAACCATGTCTATTTTGGACATCGGTCTGCTGACAGGGTTCAAAGTGGATGAACGGGATCTTTCGAAGTTATCCAGCGGTAGGGATAAGTACATTCAGAGCTTTGAGCTGAACAAGGAGCTATCAGAGCGAGGATCTCTTATCATCTACGTGGATAAGGTTTCTAATAAACAGAAGGAAAGGATTGTCTTCAGAATGCACAAGATCAGTGAAGTGGGAATGCTGCAGCCCGCCGGAGTCACTATATAAGCGTTGTGTGAAGTTTTACCATCCCTATAAGAAAGATGGATCACTGAACAGACTCTGCCATGAAGAGCTGTGCCAGTGCGCTGAAGAGAACTGCAGTTTGCAAAAGAATGAACACATCGATGAGGAAAAACGTGAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10158 lncRNA downstream 149795 27064144 ~ 27091429 (-) False G6949
TU10157 lncRNA downstream 175894 27064144 ~ 27065330 (-) True G6949
TU10140 lncRNA downstream 228853 27012123 ~ 27012371 (-) True G6933
TU10136 lncRNA downstream 231672 27009156 ~ 27009552 (-) True G6929
TU10134 lncRNA downstream 233237 27007503 ~ 27007987 (-) True G6927
TU10213 lncRNA upstream 42108 27297175 ~ 27297611 (-) True G6981
TU10173 lncRNA upstream 44359 27299426 ~ 27321856 (-) True G6957
TU10214 lncRNA upstream 46739 27301806 ~ 27302275 (-) True G6982
TU10215 lncRNA upstream 48033 27303100 ~ 27305172 (-) False G6983
TU10217 lncRNA upstream 48033 27303100 ~ 27305694 (-) True G6983
XM_043238076.1 mRNA downstream 2491 27223905 ~ 27238733 (-) True c3a.6
XM_043238079.1 mRNA downstream 17463 27208559 ~ 27223761 (-) False c3a.4
XM_043238078.1 mRNA downstream 17463 27208559 ~ 27223761 (-) True c3a.4
XM_043238119.1 mRNA downstream 38596 27196238 ~ 27202628 (-) True LOC122344379
XM_043238120.1 mRNA downstream 41422 27196238 ~ 27199802 (-) False LOC122344379
XM_043238095.1 mRNA upstream 25234 27280301 ~ 27289321 (-) True dennd1c
XM_043238096.1 mRNA upstream 25234 27280301 ~ 27289318 (-) False dennd1c
XM_043238103.1 mRNA upstream 124931 27379998 ~ 27393878 (-) True LOC122344156
XM_043238153.1 mRNA upstream 127725 27382792 ~ 27385079 (-) True LOC122344630
XM_043238107.1 mRNA upstream 162886 27417953 ~ 27421722 (-) True LOC122344221
TU10183 other downstream 38657 27197905 ~ 27202567 (-) False LOC122344379
TU10045 other downstream 438299 26801910 ~ 26802925 (-) True c1h19orf53
TU10046 other downstream 438299 26802170 ~ 26802925 (-) False c1h19orf53
TU9833 other downstream 823345 26416859 ~ 26417879 (-) False smdt1b
TU9834 other downstream 823345 26416883 ~ 26417879 (-) False smdt1b
TU10417 other upstream 499715 27754782 ~ 27939452 (-) False G7105
TU10420 other upstream 499715 27754782 ~ 27939452 (-) False G7105
TU10496 other upstream 819581 28074648 ~ 28076444 (-) False LOC122349330
TU11020 other upstream 989061 28244128 ~ 28248523 (-) True G7475
TU11081 other upstream 1135972 28391039 ~ 28392053 (-) True G7508

Expression Profile