RNA id: XM_043238106.1


Basic Information

Item Value
RNA id XM_043238106.1
length 5041
RNA type mRNA
GC content 0.39
exon number 5
gene id LOC122344204
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 27431730 ~ 27438279 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttttttttttaaatctgtctgATTTATGCAGCAAACATATTAAGCCTGTTATAAGAAGACATAATCTACTCTAGAAGGACTGTTGATGTCAACCAGAAGTTAAGTTAGGGCCACAAAAGCATTCATGCACAGTGACGTTTGTTTATGTTGTTGTATGTTATACTTACACTTAGAAAAAGTCTATATTAGAGCTATATTTGTGCTCCTAGAGTCTAGCACACATCTTCTGGACtgactttacaaaaaaaaaacacacactataAAAAATTGTTTCGAAATATTACGagcaatattattaattaattcaactCATTAAAATTAGttataattattcaaatgataTGCTTACAGTGTACCATTGAAAATGAGTAAAACAGCttgaaataattaagtaaataaaaaaaaaaaagataagaataAATACTATGCTATGTGAGCCAGGCCAGTAGATGGCGATAAAGAAACAACCTGCTAAAACGTAATATTCATGCACATGACATAACCTTtcacaaattcacatttttgttgtttacatggAGATGACACAGGCATCGTGttcaaaattcattcattcctgCAGGAGAAGTCTTTACGCTGGACCATTTTGGGTCTGAAGGGACTAAATAGACAACATGATGGGAATCGAGAATTTACCAAATATGATCGTATGGTTCTTTTCCTGGTGAATCACCTGGAAATGTCTCAAATACGCTAGGATCAGAGCATCCATTCTTCACAGAGCATCCTCTGTTGGTAAAAGGCCAGAGGTTTCTAATTTTGAGGATTTTAAGATAAACCTGCCAACGGGATTTGAACCTAAAGAGTTAGATAAAAGTCCAGGGGTATTTTgcacattgcatttatattctggcttcatctgcttgcctgtacaaaatatacatcaCGTGACATCAGGTGAAGACTATCAGATTTGTAGGTACACAAGGGTTTGTTGATAGGCAGTGAATGGTATTTATTAACTGAGCAACCTGTTCCTgaatcaacatctttgttgatcTGAAGAACCCGTTTAAGAACCCGGTGCTCGTACAGCAATCAGTCTGATTGTAGGCGTTACTTATGGGCAAGGTTTGGCTTAGGTGTAGCAATATGATAATTTTTCGattaaaatatgttgacctGGGAACATGTGGAATCAGGACGTGCATCTGGATGGAAGCACTGAACAGAACTGAGGTAATTGAAGCTAATTAacgacacacacctgaacagaAGGACGTAGTTAACAGAGACCAGGTCACACGTGGGgactgaaaacacaaaaaagtccAGGGGTTCTGGCTTCATCTGCTTGCCTGTACAAAATATGCATCACGTAACATCAGACTGAAGACTAGCAATTTTCTGGTTTCACTGAATGTCCTTCAAACACACCTCCCATTGTTTGCCGTGCAGttactttcactttcatgtCACACGATTCCTGTTTACTTGCTCCTACAGTTTAATTTTACATATCCGCATCAGAGCTTATGATAAAAGCTCACTGTGCTGAAATGAAAAGCGTCTCtattttaaaagacttttattgGCAATGTGTGTGATATAAAGACGACCTGATAAACTAGCTGGTGGAATAAATGCATCTGTCTTCAAAATGAGCCAGGCATACAAATGTTTCTCAACTCAAACCCAATGGCTGAATGCACGTGATTTAGCATTTTCCCCATTTCTCTACTCTGCTGCCTTCTTCCAGTTTCTCTTCCCCAGTCTCTTCGAATGCTGAATTCCTGAATATGTGTTTTTAAGTGTGGGGCGGGAACTGCTTTGTTAGCTTGCTCGAGCTAGCTAATTATGTTTCTTAGCGTGCCTTTCGGTGCTAGTGTTGCGCTAAAGCTCGTCATTCTGTAGGACTACGCTGTCATTTAGGCTAAATCTTTCTAGTTGTTACGTTCACGTGTTCTTTTAAAAGCGAGCAACTTTTGACATGATTTAATACAAGCCAGGTAAACAAAGTGACGCACTCGGTTACCTGAACTGAAGAGGACAGCTTCACAAGCAGCAAGAAATACTGCCATCTTCGCGAGATAAGAAGACGAAACAAcagtaataacaaaaacagcatgGCATCAGCACAAAGCGACTCTGATGAAGAACATGATTCACGTGAGCTGAGGATTGTGTTGCTGGGAGTTTCTGGAGCTGGAAAGAGTTCAACCGGAAATGCAATATTGGGTCGAGAGGCGTTTAAAGAGAACAGAaccagagagagtgagaaacagAGAGGAAGAGTAGAAGACAGAAACATCTCCATCATCGACACGCCAGAATTCTTCGACATTTATCTGACTGATGAAGAGATGAAGAAGCAGATGATGAAGAGTCTGTATCTCGCTCATCCTGGTCCTCATGTGTTCCTGCTCATCATCAACCTGGAGAACTTCAGAGAGGAGCAGAGGAACATCGTGGAGCAAATTCAGGAGAATTTTGGAGAAGAAGCTTTGAGGTTCACCACGGTTTTGTTTATTGGACGAGAAAAGGTCTCCAGAAGAGCACTGAATCAAATCATTGAGAGTGAAGAAACGCAGAAAATGATGGACTACTTTGAGGGAAGATTTCATGTGATAAACAGCAGAAACGAGTGTGATTTCGGCCAGATCGTAAAGCTCCTGAAGAGCATCGATGAAATGAGGAAGAAGAGTGGAGAGCGACACTACAGCAATGAGACCTACCTGAAGAATCTGAGAAAAATAAAGGAGCGGGAGAAAATGAAACAAGCggaaaacagaataaaacaagaagaagCGAGAATGAAACAGGAGCAGGTTTGGAAAAGACACACGGAGATGAAGAAAACACAAGACGACAGTGATACGTGGAAGCAGAAAAGAGGTTTAAATCaggaggaaataaaaataagaagcaaAGAGGAGGGCATAAAAGATGACAATGATAGAAAAACAGAGAACGTGAGTAagaataaaacactaaatacgAGAGAAAACGAAGCTGCTGTTCAGGACAATCTCAGGAAACAGATGGAAAGtcggagagagaaagaaagacagagatggAAACTAGAAAGAGAAAGCACACAAGAAAATCCAGCAAGACCAGCGTCTGAGGAAAGCCAAGAGAAGAAACAAGAGGACAACAGCGAACAGgccacagaaaaagaaacagagtTACATGGTCATCTCCTCAGACTTATGATGGGTCTTGAGTTAAGTGAGATGGCTCTGAGGTTGTCACTAGAAAGAGCAATGCTACACAGAAATCTGACAAGACAAGGCCTGAGGATTGTGCTGCTGGGGATTGTTGGAGCAGGAAAAAGTTCATCTGGAAACACCATTTTGGGCCGAAATGTGTTTCAGGCGTGCTCAGGGTCAGCCACTGAGAGCTGTGAGAAACAAACAGCAGTGGTTTCTGGGAGAACCGTCTCAGTAATAGACACTCCACCACTGACAGAGTTGTTGTTCTTGTTTCACCAACAGCATGAAATCGAGAAAAGTGTAGAAATGTCTGCTCCTGGTCCTCATGTGTTTCTGCTGGTTATTAACCTGATGGGGTTCTCAGAGGAAAGGATAAACACAGTGAAATGGATCGAGGAGAACCTCGAAACAGAGGCTTTAAATCACACAATCGTACTTTTCTCTCATGCCGACTGGATGAATCTGCTGATGGATGAGCCTTTGATTGAGTATATCAAAAACCACAACGCTCTAAAATCCCTGATTGACAGCTGCGGGGGCAGATATCACTCGTTCGACAATAAGGAAATCCAGAACCGCGTTCAGGTCCTAGAGCTGCTCGTGAAGATTGTCGAAATGCTGGAGAGTAATGGAGAGACACACTACACCAAACCgaacatatttaaaagtgtCCTAAAAAAGAGTCAGTCGAATACTAAACAAGACGATGCAGGTGGCTGTGAAATACAGTAAGACCTGTTTAAACCAAGAGCGACAGTCATAACTATAACCGTAGCGTGCAAACTCGATAATTACAttcacataatataataataaaataaatagaattttagTCAGGGTCCTTGGTATGAATGAGCCTCACGAGTGTCTGTCATCTGAATGGAggtgttatattatttattttaatgaacatgATATAATTTTGACATTATGTATATGATTAAAGAaagatttaattcaaatgagAAACACATTTGATATCACAGGACTGGATGGGacacctattttttttttattacaaaaaaagctatttgattttaatatatttatttagttgtctCATGTTATATcgaaatgtatacatttcataaatgctTGATTTTGTACTTTCTTTTACATCAGTCATCTGTTATCATGGATGTCTTGAACTTGATCCTGAACTTGAGCTACTGAAAACACAGGAAGCTTTTTTATTTGGTCTGAAGCAATCAGTTTAATTCATATGTTATGTTTGTAGTTTATATTAGCCCTCTTAATGAAATACTAAACTTGTTGAAAATTATACCATCGTTTGGGTTTCAGTAGTttgggaggaggaggagggtcaTGATGAGTGATGGATCAAACGCAAAAGCATTCCTGGGTTGGTCAGAAATGAATGTAGAGTCATAAAATAGATTGAGTGACGTAACAATGAAAAGGCGAGTCACCGTATAAGTGACTGTAATGAGAACCGGATCTgccagaaaacaacaaaagatcCGCCCAAAAGAAAAATGCCATTCATTCCAGTTAAACATCTGACGGAAAGAAGCACACGGTCGTGTCGAAGATACGTTATTACCTTAACTCTAAAACAGAAACTCCAGATGAACTGAGCTTAATCGTGCCTGTTAACCGAAGGACTCTATCGGCTCTAAAACACTGTCATTGTGATTCTTGTCATCAGGCTTAGACTACTTCGCTGTACAGAACAGCTCGAATAGTTTCATATTTAGGTGCAGTGTGTGATGTTTAGGATCTGTTGACAGAAATGTAACATTCACAACTTTTCAGAGGTGTATAAAGACATAATATacagatgtgttttttattaccTTGTAATAAACTATTGCAAATGAGTGACCAATTAAATGACCAATATTGAC

Function

GO:

id name namespace
GO:0005768 endosome cellular_component
GO:0044433 obsolete cytoplasmic vesicle part cellular_component
GO:0044440 obsolete endosomal part cellular_component
GO:0010008 endosome membrane cellular_component
GO:0016020 membrane cellular_component

KEGG:

id description
ko04217 Necroptosis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10220 lncRNA downstream 47837 27375317 ~ 27383893 (-) False LOC122344630
TU10177 lncRNA downstream 102403 27316372 ~ 27329327 (-) True G6961
TU10172 lncRNA downstream 117216 27312943 ~ 27314514 (-) True G6956
TU10217 lncRNA downstream 126036 27303100 ~ 27305694 (-) True G6983
TU10215 lncRNA downstream 126558 27303100 ~ 27305172 (-) False G6983
TU10240 lncRNA upstream 7192 27445471 ~ 27448558 (-) True G6996
TU10248 lncRNA upstream 59615 27497894 ~ 27498743 (-) True G7000
TU10257 lncRNA upstream 153094 27591373 ~ 27592450 (-) True G7009
TU10258 lncRNA upstream 155442 27593721 ~ 27595844 (-) True G7010
TU10263 lncRNA upstream 207744 27646023 ~ 27646725 (-) True G7012
XM_043245167.1 mRNA downstream 5583 27422954 ~ 27426147 (-) True LOC122349201
XM_043238107.1 mRNA downstream 10008 27417953 ~ 27421722 (-) True LOC122344221
XM_043238103.1 mRNA downstream 37852 27379998 ~ 27393878 (-) True LOC122344156
XM_043238153.1 mRNA downstream 46651 27382792 ~ 27385079 (-) True LOC122344630
XM_043238095.1 mRNA downstream 142409 27280301 ~ 27289321 (-) True dennd1c
XM_043238102.1 mRNA upstream 157 27438436 ~ 27441762 (-) False LOC122344130
XM_043238101.1 mRNA upstream 157 27438436 ~ 27441000 (-) True LOC122344130
XM_043228661.1 mRNA upstream 165899 27604178 ~ 27633774 (-) True gcgrb
XM_043250613.1 mRNA upstream 285899 27724178 ~ 27726902 (-) True si:dkey-27j5.5
XM_043250537.1 mRNA upstream 320939 27759218 ~ 27765006 (-) False LOC122352823
XR_006250838.1 other downstream 176663 27241224 ~ 27255067 (-) False LOC122343833
TU10183 other downstream 229163 27197905 ~ 27202567 (-) False LOC122344379
TU10045 other downstream 628805 26801910 ~ 26802925 (-) True c1h19orf53
TU10046 other downstream 628805 26802170 ~ 26802925 (-) False c1h19orf53
TU9834 other downstream 1013851 26416883 ~ 26417879 (-) False smdt1b
TU10417 other upstream 316503 27754782 ~ 27939452 (-) False G7105
TU10420 other upstream 316503 27754782 ~ 27939452 (-) False G7105
TU10496 other upstream 636369 28074648 ~ 28076444 (-) False LOC122349330
TU11020 other upstream 805849 28244128 ~ 28248523 (-) True G7475
TU11081 other upstream 952760 28391039 ~ 28392053 (-) True G7508

Expression Profile