RNA id: XM_043238109.1


Basic Information

Item Value
RNA id XM_043238109.1
length 1549
RNA type mRNA
GC content 0.52
exon number 10
gene id prkacab
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 27087543 ~ 27097079 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAAGCGCGACAGGCGCGGCAGCATCCCTCCCTACCTGCGGCTCTCCTTAGCGCCTGACAGGCCCGGAGTCATGGGCAACACGCCGGCCGCCAAACGGGGCAACGAGATGGAAAGCGTCAAAGAGTTTTTGGCCTTCGCCAGAGAAGATTTCCTCAGGAAGTGGGAGAATCCTGCACAGAACACGGCGTGTCTGGAGGACTTCGACCGGCTGAAGACTCTGGGCACCGGCTCATTCGGTCGCGTGATGCTGGTCAGACACCGAGAGACCGGGCAGCACTACGCCATGAAGATCCTCAACAAGCAGAAGGTGGTGAAGCTGAAGCAGATCGAGCACACTCTGAACGAGAAGAGGATACTGCAGGCCGTCAGCTTCCCCTTCTTGGTGCGGCTGGAGTACTCCTTCAAGGACAACACTAATCTCTACATGGTGATGCAGTACGTTCAGGGAGGAGAGATGTTCTCACACCTGCGGAGAATCGGCAGATTCAGTGAACCCCATGCACGGTTTTATGCTTCACAAATAGTTTTGACATTTGAATATCTGCATGCCCTTGACCTGATCTACAGAGACCTTAAACCAGAGAACCTCCTCATCGATCAGCAGGGCTATATACAGGTGACAGACTTCGGCTTCGCCAAGCGGGTCAAGGGTCGCACGTGGACATTGTGCGGCACCCCGGAGTACCTGGCCCCGGAGATCATCCTCAGCAAGGGTTATAATAAGGCCGTGGACTGGTGGGCTCTGGGTGTGCTGATGTACGAGATGGCCGCCGGTTATCCTCCGTTCTTTGCCGATCAGCCCATTCAGATCTACGAAAAGATTGTCTCAGGAAAGGTACGCTTCCCGTCGCACTTCAGCTCCGACCTGAAGGACCTGTTGAGAAACCTGCTGCAGGTGGATCTCACCAAGCGCTACGGGAACCTTAAAAACGGAGTTAACGATATCAAAGGACACAAGTGGTTCTCCACTACTGACTGGATAGCCATTTACCAGCGGAGGGTGGAGGCCCCGTTTGTGCCTAAATGCAGAGGTCCCGGGGACACCAGCAACTTCGACGACTACGAGGAGGAAGAGATCCGTGTGTCCTTCACGGAGAAGTGTGCGAAAGAATTTGCTGAGTTCTAAGCGGAATAAGGGATAGatatcagagagagagagagagagagagagagagagggatacaggtggagagagagaacgagaaaaAGTGCATGAATCTTAAAGCGATCCTTCCTCCTGTTAAACAGCAGAGAAACCAGCGGAAGAGAGCAGAGAAGACCTCCAGGGATAAACAGTGAGGCCTTTATCATCTCCTCtattttaatcatgtttgtaattttctcctttttttttttttttcttttttttcctttttttcaatcTCTGTTCACGTGATATTAATCGCGCTGGATCCGGCGGGGTGTGTGTGTTGGCCTGCGGACAGACGAAGACGGTCGGGGATCATCTCTAAACCTCGAGCAGTTCCCGCTGAAGAGCAGGTCCTCCACTGGGTCGCCATAACAACCGTGCAGAAAAATAAgggggggg

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K04345 PKA; protein kinase A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10157 lncRNA downstream 22213 27064144 ~ 27065330 (-) True G6949
TU10140 lncRNA downstream 75172 27012123 ~ 27012371 (-) True G6933
TU10136 lncRNA downstream 77991 27009156 ~ 27009552 (-) True G6929
TU10134 lncRNA downstream 79556 27007503 ~ 27007987 (-) True G6927
TU10133 lncRNA downstream 80400 27006647 ~ 27007143 (-) True G6926
TU10213 lncRNA upstream 200096 27297175 ~ 27297611 (-) True G6981
TU10173 lncRNA upstream 202347 27299426 ~ 27321856 (-) True G6957
TU10214 lncRNA upstream 204727 27301806 ~ 27302275 (-) True G6982
TU10215 lncRNA upstream 206021 27303100 ~ 27305172 (-) False G6983
TU10217 lncRNA upstream 206021 27303100 ~ 27305694 (-) True G6983
XM_043238104.1 mRNA downstream 1593 27078499 ~ 27085950 (-) True samd1b
XM_043238100.1 mRNA downstream 10734 27068674 ~ 27076809 (-) True zgc:136908
XM_043238130.1 mRNA downstream 19715 27066158 ~ 27067828 (-) True ndufb7
XM_043238115.1 mRNA downstream 32948 27051727 ~ 27054595 (-) True dnajb1b
XM_043238097.1 mRNA downstream 63243 27014477 ~ 27024300 (-) True LOC122344082
XM_043238126.1 mRNA upstream 1827 27098906 ~ 27103260 (-) True asf1bb
XM_043238123.1 mRNA upstream 6810 27103889 ~ 27105348 (-) True LOC122344431
XM_043238128.1 mRNA upstream 18402 27115481 ~ 27117602 (-) True LOC122344512
XM_043238131.1 mRNA upstream 26253 27123332 ~ 27124722 (-) True LOC122344544
XM_043238132.1 mRNA upstream 55066 27152145 ~ 27156249 (-) True LOC122344560
TU10045 other downstream 284618 26801910 ~ 26802925 (-) True c1h19orf53
TU10046 other downstream 284618 26802170 ~ 26802925 (-) False c1h19orf53
TU9833 other downstream 669664 26416859 ~ 26417879 (-) False smdt1b
TU9834 other downstream 669664 26416883 ~ 26417879 (-) False smdt1b
TU9622 other downstream 952057 26130788 ~ 26135486 (-) False G6592
TU10183 other upstream 100826 27197905 ~ 27202567 (-) False LOC122344379
XR_006250838.1 other upstream 144145 27241224 ~ 27255067 (-) False LOC122343833
TU10417 other upstream 657703 27754782 ~ 27939452 (-) False G7105
TU10420 other upstream 657703 27754782 ~ 27939452 (-) False G7105
TU10496 other upstream 977569 28074648 ~ 28076444 (-) False LOC122349330

Expression Profile