RNA id: XM_043238124.1


Basic Information

Item Value
RNA id XM_043238124.1
length 2464
RNA type mRNA
GC content 0.46
exon number 4
gene id LOC122344447
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 27180727 ~ 27185902 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gaaaataaaaataatttagaaactAAAAACGAATTGTTAGTAAAGTacgaaaatacatttattaaacattattaagcGGCTTACTGACGCTTTTTAATGCTGGAACAttgctttataaaaatataaattctgtgcATTTGTGCTTAACTAATGATTCAAAGTGTGccgttattataaagtgttgcctattttaatttatttatacaacagCAGGGAAGAATATTGCATTCGTGCGGGTCCCGGCTTTATCCTGTGCAACGAAAGGGCAGACAAgctagcaaaaaaaacaacaacaaaaaaaaaaacaaccaaaacagCAAATGTTGAAATCGAGTCAAGTTATATCTATATCAAGTTATCTGAATTAGATGGAAAGAGCATATGTGAAATGAAATACAGCATCAGTGGCATTAAGAAACAGCTGGAAGGCGTTTATACtctatatatacagaaatatacaaacaaaatggGTGTATCAAGAGATAATGGtaagaatatgaataaatttTAAGCAGAATAAGGAGCATTACAGCCTTAAAAGCACTCTTTATATTATGGGAAAACGCCAGACAGTAGATAGAAATgttgaaagcattttaaaatgtgcagagAAAAGAAGTTtggttgtttttaatgaaagaaactGTAGTGGAGAATGTAGCGTAAAGGAAATTCAGCACAGTAGGGGGCAGTAGTGCAACAAACCGGATGCTGTAAAACtccgaagaagaagaagacttCCTCCAGTCCTGCGGGAAGCAGCAGAGAGCCGGTCTATCGGGCTGAAGAAGACAAACATCGGCTCCAGAGCACTTGCTGCTGTCATTCAGTGTCTTCGCTGCACTTACAGACGGGTTTTTTTCCTCCTGGATCCAGCGGAAAGAACTCATCGGGATTCTTTTATTCGTCTGTGAAGCCTGCTCTAAACCCCGCGCTCTTCAGGACACCCCGGCAGTGAATAACATGGGTGTGCGCCGAGCATCCGATTAGTTCAGAAAGTACAAAGAGAGAAAACCCTGCGCTTCACCTACTTCGGCGGGAGATCGTTTTCTTCTACACGTCGGACCCCGGTTACACGCTTCCGCTGGGGTTTACCTCGGATTCGGAGCTGGACGGTTCCGCGCTCTTCCACAGACACAAGGCCGATTTCTGTCGCCCGAACCTCGCGAGCCACCATGGCTAAAGTGCAGGTGCTGAACGTGGCTGTTCTGGATAACCCCAGTCCTTTCGGAAACCCGTTTCAGTTCGAAATCACATTTGAATGCATGGAGGACCTGCCTGAAGATCTCGAGTGGAAGATCATCTATGTGGGCTCTGCAGAGAGCGAGGAGTACGACCAGATCCTGGACTCGGTTCTGGTCGGCCCAGTTCCCGCAGGAAGACATATGTTCGTCTTTCAGgcggatGCTCCAAACACGGGACTGATCCCCGAGAGCGACGCGGTGGGCGTGACCGTAGTGCTGATCACGTGCACCTATCGGGGGCAGGAGTTCATTCGCATCGGCTACTACGTGAACAACGAGTACACGGACCCCGAGCTGCGGGAGAACCCGCCGGTCAAACCCGACTACACACAGCTGCAGAGGAACATCTTGGCCTCTAACCCCCGCGTGACCCGTTTCCACATCAACTGGGAAGCGACGATGGACAAGATGGAGGATTCGGAGAATGTAGACCCGGCCCCCAATGCCATGCTCCCGCCCTCCTCCATGCCCGGCAAAGCCCCGCCCCTCGGACTCATGCCCGACAACTCTATGGACTGCTTATAAAGCGCGAACGCGACCGCAACCTCGCTCGTGAAGTAATAAATGTGttcttttgtatttatacacCTACAGTTGTCCCACACGTGCTCTTAGCGCTGAGATCGGACGCGGCAGCAGGGGGCCGGACCTGCAGCACCAGCAGACGTGGACTGTtctcttctgtttttctgtgGTGCACATCACTAGTGAGGTGAATCCCATAAAAACGCGTTCGGTCGGCATTTTCTTAGGAAGTACTATATTTTGCAGAAGCGTTTTAGGACTGTTAGTATGTTTTGAGACTGTTCAGCCCCAAGCTGTCGTTACTGTAACCTCCAGAAACACGCTCGCGCTCATCACCGTAAAGCAGAGTTGTTTATGATAACCATAGAATAGTACCATAcggtgtctttttttatttcctgttaAGAATTACCACTAAAAAGtttcccttttttaaaaaaaaaattaaataaatgtgacctcGACATGTTTTTTTGGCGAGATTCATCCTGCGGTCAGAAACCGGAGCAACTTTTCGGGAACACTTTGCTCGGATGCGGTCGGTGTTCGGGACCCGATTCCCGGCTTCCTGTCCGAGATGAGTCGTTTTAAACCGAATGCAAGTTGGTTCTTTCGTTGCCTTGTTTTCTTTCCGTGTGACGTTTTGTTTATGAAAAGTCTGGGATTTAATAAATACGATCTTTTGTCTTTGTAAA

Function

GO:

id name namespace
GO:0006333 chromatin assembly or disassembly biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K10753 ASF1; histone chaperone ASF1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10158 lncRNA downstream 89298 27064144 ~ 27091429 (-) False G6949
TU10157 lncRNA downstream 115397 27064144 ~ 27065330 (-) True G6949
TU10140 lncRNA downstream 168356 27012123 ~ 27012371 (-) True G6933
TU10136 lncRNA downstream 171175 27009156 ~ 27009552 (-) True G6929
TU10134 lncRNA downstream 172740 27007503 ~ 27007987 (-) True G6927
TU10213 lncRNA upstream 111273 27297175 ~ 27297611 (-) True G6981
TU10173 lncRNA upstream 113524 27299426 ~ 27321856 (-) True G6957
TU10214 lncRNA upstream 115904 27301806 ~ 27302275 (-) True G6982
TU10215 lncRNA upstream 117198 27303100 ~ 27305172 (-) False G6983
TU10217 lncRNA upstream 117198 27303100 ~ 27305694 (-) True G6983
XM_043238132.1 mRNA downstream 24478 27152145 ~ 27156249 (-) True LOC122344560
XM_043238131.1 mRNA downstream 56005 27123332 ~ 27124722 (-) True LOC122344544
XM_043238128.1 mRNA downstream 63125 27115481 ~ 27117602 (-) True LOC122344512
XM_043238123.1 mRNA downstream 75379 27103889 ~ 27105348 (-) True LOC122344431
XM_043238126.1 mRNA downstream 77467 27098906 ~ 27103260 (-) True asf1bb
XM_043238127.1 mRNA upstream 317 27186219 ~ 27187729 (-) True LOC122344496
XM_043238125.1 mRNA upstream 8187 27194089 ~ 27196061 (-) True LOC122344463
XM_043238119.1 mRNA upstream 10336 27196238 ~ 27202628 (-) True LOC122344379
XM_043238120.1 mRNA upstream 10336 27196238 ~ 27199802 (-) False LOC122344379
XM_043238079.1 mRNA upstream 22657 27208559 ~ 27223761 (-) False c3a.4
TU10045 other downstream 377802 26801910 ~ 26802925 (-) True c1h19orf53
TU10046 other downstream 377802 26802170 ~ 26802925 (-) False c1h19orf53
TU9833 other downstream 762848 26416859 ~ 26417879 (-) False smdt1b
TU9834 other downstream 762848 26416883 ~ 26417879 (-) False smdt1b
TU9622 other downstream 1045241 26130788 ~ 26135486 (-) False G6592
TU10183 other upstream 12003 27197905 ~ 27202567 (-) False LOC122344379
XR_006250838.1 other upstream 55322 27241224 ~ 27255067 (-) False LOC122343833
TU10417 other upstream 568880 27754782 ~ 27939452 (-) False G7105
TU10420 other upstream 568880 27754782 ~ 27939452 (-) False G7105
TU10496 other upstream 888746 28074648 ~ 28076444 (-) False LOC122349330

Expression Profile