RNA id: XM_043238213.1


Basic Information

Item Value
RNA id XM_043238213.1
length 6069
RNA type mRNA
GC content 0.46
exon number 11
gene id trpc5a
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 7071589 ~ 7134282 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCCTCAGTCTGACACCATGACAACCGCAGCGCGCGAACGCTGGAATCTTTGCAGCTGCCGCGAAGCCCAATACGAAGACAAGATGCCGCCATACGCGCGCGAGACGCActtgtttttttgaaataacCCTCGTTCTGCACTTTGGGAAGAAGACGTCTGAGATTCGCAAAACCACCTGTATCTAGCGTCCGTGGGGAACGTGAGTTAAACAGCCTTTCTGTTGGCCAAACCTTTGTGTTTCTGTGCCGTAAGAACTGCGCTGGGTTgagtacactgaaaaaaaagccGCGCGTATAGGAGCGATAAAATGCGCATTGGAGTCAGGGATGCTCCTCATGGCGTTTACGCGTGGAGAGCCCACTGGGGCGTGTGTGCTGTGCGTGTTAATgcatgtgtgagagagtgagaaaggAAAATAGAGGAAAGAAAAGAGGCTCGTACATTCGCCGCACGCGTTCCACTGGCTCTACATGGGGAATATGAGGATCTCAGGAGGACGCCAATGATAAATAGTATTCCAGACTCCCCTGTCACATAAGAAGACCACGGAACACGCTCCTCAGAGACCCCTTGTTTGATACGAGGGGCGATTGAATACCCAGATAGTAAGGCGCACCAGCCATCATGAATCCCATGTCACATCTATACTACAAAAAGAGCAGCTACTCTCCGTACCGGGACCGAATCCCTCTACAGATCGTCCGGGCGGAGGTGGAGCTATCCCCAGAGGAGCGTTCGTTCCTTTCTGCCGTGGAAAAGGGTGACTATGCAGGGGTCCAGCATGCACTACGTGAGGCGGAGGTCTACTACAATATTGACGTCAACTGTGTGGATCCATTGGGCCGCAGTGCGCTTCTAATTGCGATTGAGAATGAGAACCTTGAGGTGATGGAGCTGCTTCTGGATCATGGAGTGAACACTGGAGACGCTCTGCTTTACGCCATCCGCAAAGAGGTGGTGGGAGCTGTAGAGTTATTGCTGTCCCACAGGAAACCCAGTGGAGAAAAACAGGTTCCATCATTAATGATGGATGCCCAGTTTTCTGAGTTCACACCTGACATCACTCCCATCATGCTTGCCGCCCACACAAACAACTATGAGATCATCAAACTCCTGGTCCAACGAAAAGTCACCATCCCTCGGCCGCACCAGATCCGCTGTGactgtgtggagtgtgtgtccAGCTCTGAGGTGGACAGCTTACGTCACTCTCGGTCCCGTCTCAACATCTATAAAGCACTCGCCAGCCCCTCTCTCATCGCCCTCTCCAGCGAGGATCCCATCCTAACCGCCTTCAGACTGGGATGGGAACTAAAGGAGCTCAGTAAAGTGGAGAATGAGTTTCGACAAGAGTACGAGGAGCTTTCTCAACAGTGTAAGCTCTTTGCCAAAGACCTGCTGGACCAGGCACGTAGCTCCCGTGAGCTGGAGACCATCCTCAATCACCGTGATGACCAGAGCGAGGAGCTGGACCCACGAGAGTGCCGGGACTTGGCCAAACTCAAGTTGGCCATTAAATATCACCAGAAAGAGtTTGTGGCACAGCCAAACTGTCAGCAGCTCTTGGCCACATTATGGTATGACGGCTTTCCTGGCTGGCGGCGCCGTCACTGGGCAGTTAAGCTGGTCATGTGCTTCATTATCGGCCTGCTCTTCCCTGTTTTTTCGCTGGTCTACCTGCTGGCTCCAAAAAGCACACTGGGGCTCTTCATTAAAAAACCCTTCATCAAATTTATCTGCCACACAGCCTCCTACCtcaccttcctcttcctcctcctcctagCCTCACAGCACATAGCACGCACCAACCTACACATGCAGGGCCCTCCGCCCACTGTGGTGGAGTGGATGATACTACCTTGGGTGCTGGGCTTTATATGGGCTGAGATTAAGGAGATGTGGGACGGAGGTTTTAATGAGTACGTCCATGACTGGTGGAACCTGATGGATTTTGCCATGAACTCTCTCTATTTGGCCACTATATCTTTGAAGATTGTCGCGTATGTCAAGTACAACAGTTCTCGTCCACGAGAGGAATGGGAGATGTGGCATCCGACCCTGATTGCTGAGGCTTTGTTTGCCATCGCTAACATCTTCAGCTCGCTCCGGCTCATCTCCCTCTTCACGGCCAACTCTCACCTGGGCCCGCTGCAGATCTCACTTGGCCGCATGCTGCTGGATATCCTCAAGTTCCTCTTCATCTACTGTCTAGTGCTTCTGGCCTTCGCCAATGGACTCAACCAGCTATACTTTTACTACGAGACTGAGGCAGCCGATGAACCCAACCATTGCAAGGGGATCCGCTGCGAGAAACAGAACAATGCATTCTCTACGTTATTTGAAACACTTCAGTCACTGTTCTGGTCGATATTTGGCCTCCTGAATTTGTATGTAACAAACGTGAAAGCTCGGCACGAGTTTACAGAGTTTGTTGGAGCCACTATGTTCGGCACCTACAACGTCATCTCATTGGTGGTTCTTCTCAACATGCTCATCGCTATGATGAACAACTCCTACCAGCTCATCGCAGACCATGCTGACATCGAGTGGAAGTTTGCTCGTACCAAGCTGTGGATGAGTTATTTCGATGAGGGTGGGACACTCCCCCCACCGTTCAACATCATCCCCAGCCCTAAGTCATTCTGGTACCTGTGTCGATGGGTACACGGGCGGCTCTGCGGGTCAGAAGCTGCTCCGCCTGAAGAAGACCCCCATAAACATGAGAATCTGAAGGAGTTTACGGAAAAGCATGCTGACAGGCTGATACAGAATCAACATTATCAGGAGGTCATCCGTAGCCTAGTGAAGAGGTACGTGGCGTCCATGATCCGCAGCGCCAAGACAAGCGAAGGGCTGACGGAGGAGAATTTCAAGGAGCTGAAACAGGATATTTCCAGTTTCCGCTACGAAGTTCTGGACCTTCTTGGCAACCGAAAGCCACCCCGGAGGAACTATTCCTCCAGCAGCGAGGCCACTCTTCGAGACGAGGTCAGCGACGACGGTGAGGCCTGCCACCACAGCGACGGGAGCAGCATCGGGGCCAAAGGTGTGTCTTTCAAAACCATAACACCTTCAGACCCGTCGTACGGAGTCTCCGCCCTCTTTCGTTCCATCTCCGGAATGGAGGTCGCTACGACGACGACAGCGGCGGAATCATCTGCATACAGGGAGGGTAAACCAAAGATCAACGGACTGAGGAAGAACCCCTCGCCCTCCTCTTCCCTGTCCTCAGTGGCTCCATCAAGACCTGCACTTTCACGAACTTGGAGGCGCTTTTCCCGCTTCTCGAGTTCCAAGAAGAACTCCTTCAGACGGCTCGGCCTGCTGTTCTCACGCATGGGCAGCCACCTTCCGCAGCCGGCAGGTGTCACCGCTGCAACCTACACTATCTCAGATGGATTGCTTCACCCGCCGGGGGCTTGGCAGGACTTGGGCTTCACCAGGGGTGCCGGACCCGTCACCCGAAGCGAGACCAACCTTAATCAGGTGGACGTGGGTGCTTTAAATGAGGGCGAAGGTGCCATGACGACCAATGGACAGAGAGCTAACGGAAGGGATGTTTTACTGACATTAGGACCTCTGTCCCCTCCCTCTTCCCTGCACTGTGCTTCCAGTTTCTCCGCCTCCAGCTCCCGCCTCCTGGACTCAAATGAGGACGTGTTCCAGGGATTGGTCGGGCCCTGTGGCGGACAAACGCCAGACTCCTCCTGCTGGGTAACAGAACAGGACGATTCGGTGACCACGCAGCTATAGTATTGCTAGTATGTACTGTACAGCACtttgataataacaataatcagtGATGATATCAATAACTATTACCTTAACCACAACCGATTCTtctgtttgttcttttgtttgctGCTGCAATATTTGTCATTCCTTTCTGAGATTTAACCAAATCGACAGTTATTTACAAGAGAGTTAGgatgaatgaattaaatgatgGATGAAAGAGATTCAGAAGGGACAGAAAAGTGCCATCATCAGAGAAATGTAGGCCAGGTTGCATTTTTGTATCTTCATTACATCACATTGTTCAgtttcatgtcattccaaaccgctatgatttttttttcttctgcagaacacaaaagaagatactttGAAGACAAACGTTTTGGCTACCACCGACTTCTATGGACCATTTTCACAGATGTGTCTTAAATCTAGTTTCTAAGAATCTAGttaataaatctaaatctttttttttttttttttttttttttttacaaattacattttcttgtttattttacattataacactgtgtgttttctgtgtggcACTGAATTacataaaactatataatacCACTGTGTTTCTATTTCTAATATCAATAATATCGATttctcaatatgtttttttcctgtttgtaaagtaataaaaacaccaGTTTAgattttgcttttacttttgcAACATGTGGGAATGCAAAAAATTAGTAGTAAAAAAGTTAAAGCTTCCCTTTACCACTGTAGAGGTGTCCACTTCTAAGAACcccagaaatgtgaaaatggtCCATTGTATAATAAGtcaggtttggaatgatcagAATTGACTGTTTAGTTTCTTAGGTGTAAGTGactctttcagacaaatccagtCTGAGTCCTGGCCCCGCCAAGCCTCTTAATGGGACAAAGCGGGTGTTTGTTGTCGACAGTTTAGAAGAAGCGCATTATTTGAGCGGactttgctttttgagctttgtTATTTGAGTGGACTTGAGAGGAATACTGAACGCAGCATCAAACTGTGCAATGACAAGGGCAGGATGCGCTATGTATTATATTGCATAGCATTTTCGGCTCGCATTTTCAGCTGCTTGAAAATGAGCGGTCGAaatttcggtgcatccctaatttttttaatataactcagaTTGGATTTGTCTAAAGAAGAACGTtgcatacacctaggatgctttaaaggtgagtaaaacacaggttcatttttcatttttgggtgaactaaccatTTAATACATATTCCAGATGTCATTGTGCATGATTCATCAGCGCATGTCATTCCATACTTTTGTCTTCATCGAAAAATCTAATATCTTGATCATTATTTTAGCCGATGTTAAGTAAGACCTTCAGGATGTTAATATCAATTagccatttaaacattttcttattgAATTGTTAGTgcagtaatataataacaaatgcaGAGTGTTACTTTTGGGATTCAACCcatcaaaatttttatttattaatttatttacatcagTAAAATAGTTTGTCaatgctgtttcatgttgactttaaccCTAAACCACAGTAGTCAACCAATTCATGCCATTCAACTCATAATTCAGCGTTATATCTCCAATGTGACAAAACGCATTGTCAGttcatgtatttcttttttatagaaAGTTCTCATTGGAAAGCGTACTTGAGCGAGAAACACATCTGATATGGATCTACAGTGCATGTTTAAGGACATCATGCTCTTGGTGGAACaggtttgatgtttttttttcctcagtaacTGATCAGTGAGCCGTTGGCACTCATGCGGtgaaggtttttcactttagtGCTATGATACGTGCACATCATAGTGTGATATTACTCGTGTTATGCACCCGGAGGGCTGAAGTTATGCTAGAATCTAACATGACTGAAatcttatttttgtattttgaatagcatgtacaaatgatttaatttcaaGACTGTTTTAGTCTAGACAgacattatttatacattatactattataatgtttttggagctgttttttttcttctttgactgcttactttttactgtatgtgaatattaattagtatattataataatcagGTATAGGGGAGATGTCCAGAGACATGCATCGAATAAGACATCCCCCTGCTCTGCGATGATGAATGCTGACAAACCATGTACAGCGCCATGCAAAAATATTCTGACTTTTGACCAACTCTGATTTTTTACTATAACTATGACATTGACGATACTTGCATTTAGaggtcatttttaatttgacatagTTTTATGTTGGAgagtaaataaaaagtgataaaaaattacctaaaaaaccagcataaataatgaa

Function

GO:

id name namespace
GO:0070588 calcium ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005262 calcium channel activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2274 lncRNA downstream 67888 6982959 ~ 7003701 (-) True G1553
TU2262 lncRNA downstream 68601 6958686 ~ 7002988 (-) True G1544
TU2245 lncRNA downstream 211323 6859889 ~ 6860266 (-) True G1532
TU2244 lncRNA downstream 213528 6857795 ~ 6858061 (-) True G1531
TU2242 lncRNA downstream 215481 6855795 ~ 6856108 (-) True G1529
TU2399 lncRNA upstream 20575 7147982 ~ 7169421 (-) False G1642
TU2378 lncRNA upstream 22878 7150285 ~ 7152480 (-) True G1632
TU2396 lncRNA upstream 34854 7162261 ~ 7164721 (-) False G1642
TU2398 lncRNA upstream 34916 7162323 ~ 7164721 (-) False G1642
TU2397 lncRNA upstream 40170 7167577 ~ 7170022 (-) True G1642
XM_043249776.1 mRNA downstream 2012 7065125 ~ 7069577 (-) True cnpy3
XM_043249388.1 mRNA downstream 52553 7008598 ~ 7019036 (-) True LOC122351948
XM_043249001.1 mRNA downstream 226133 6839928 ~ 6845456 (-) True LOC122351719
XM_043249006.1 mRNA downstream 226133 6842324 ~ 6845456 (-) False LOC122351719
XM_043241193.1 mRNA downstream 237507 6828520 ~ 6834082 (-) True rnf175
XM_043238266.1 mRNA upstream 6984 7134391 ~ 7135608 (-) True zgc:174945
XM_043238256.1 mRNA upstream 8353 7135760 ~ 7138480 (-) True LOC122344706
XM_043238247.1 mRNA upstream 13926 7141333 ~ 7143853 (-) True LOC122344694
XM_043226871.1 mRNA upstream 60159 7187566 ~ 7196661 (-) True cfap221
XM_043222404.1 mRNA upstream 70126 7197533 ~ 7203087 (-) True crfb15
TU2105 other downstream 530206 6539528 ~ 6541383 (-) False LOC122342514
XR_006251174.1 other downstream 603335 6458051 ~ 6468254 (-) False gaa2
XR_006251170.1 other downstream 796838 6267663 ~ 6274751 (-) False si:ch211-14k19.8
TU1845 other downstream 958066 6111463 ~ 6113523 (-) True G1270
XR_006251180.1 other downstream 1218345 5846076 ~ 5853244 (-) False LOC122346875
TU2401 other upstream 34916 7162323 ~ 7169421 (-) False G1642
XR_006250549.1 other upstream 78177 7205584 ~ 7295633 (-) False dmd
XR_006250550.1 other upstream 91579 7218986 ~ 7295679 (-) False dmd
TU2800 other upstream 1475893 8603300 ~ 8607795 (-) True G1926
TU2970 other upstream 1651811 8779218 ~ 8782587 (-) False LOC122351550

Expression Profile