RNA id: XM_043238256.1


Basic Information

Item Value
RNA id XM_043238256.1
length 1680
RNA type mRNA
GC content 0.40
exon number 5
gene id LOC122344706
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 7135760 ~ 7138480 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GACGGTAATACAGGCTGCGGGGTTTTTTAACTTTCGGTACCAGTATTGCTGCATCATAAAAGCCCGTATAAAAGCCCGTGTCTGATAACAAACAAACCACACAACGCATTCGCCATGGTGTATctactgattttaattttaagccTCATAAACAGAGCTTATCTTTCGGATATTGTAGCACAAGGGAACACATCTGTGGAGTTCGGTCAGGATGCCTCGTTCTCTTGTACGCGGTCAGACGCGTCCGGCGTCAAACAGATCACCTGGCAGCGGGTGAGCGGCACGGAGCCGGTACAAACTCTGGCTACATACAGCGATCTCTACAAGGATCACGTGCACGAACAGTATGTCGGGAAAGTCACTTTCACGGCGGCGTCAGTTAATTCAACGTCCATCAAGATCAAACACGCAACGTTTGAAGACGAGGCTTGCTACATTTGTTCCTTTAAGGTGTATCCAATCCAACCTCAACGACAGACGCTGTGTCTCACTGTTAAAGGCGTATCAGAAATAACAGCGTCGGTGAATCCTGCGCCCAGTTCTGCTCCAGATGTTGTAGTCTCGTGTTCAGCGACTGGTAAACCAGCCCCAACTATCCTCTGGAAATCTGCAGGGAGAGAGTTGAACGATTTTCGGGAAACTAATTTCACAACGCTCAACAAAGACAGTTCAACCACAGTTACGAGCAACCTCACTCTACCACTGTCACAGTTTCATGGGAAGTACGTGGAATGTGTGGCTCGGAGTGACGACACAGAGAAGAGCGACCAAATCTATGTGTCTGATAAAGATTATGtgaaCCTTACACCAAGAAGTTACATCATTACAGTTTCAGTCCTCATTGTCATGACTGTTGTGGTTGTCATTTTTGCCATCTGTCTTCACACTGCACTAAAGAGAGGTATTTTTGGGATAAAATCTGCTTATGAGGAACCCCTTAATGCCCCAATCGAGGAATGTTAACTCTGCTGCTCCTGTACCTCATAGCATGGATATTTTGCTCACAATCTTTGTCAActtttaagtacaaaaatgtgTATTCCATAAAGGAATCGTGAATTTCATGtctagtatttaaaaaattatttatttatgattattgtGCAGCATTCCATTACATTAGTGCAGCTGCATGATTATTGTACCATACAGATGATATTTATTCTGTAACTTTAGATTTTCTTAGGCTCATGTATTTGCACTTTATTTGAATGCACTGAATAGTTTTTAATTGTCTGCTTGTGGAGTTGAATCTGCGACAGTTATTTATACATTCCTAAATACCGGCTCTGTGCTAGTCTTGACATTTTTCAACAATCCTTGATGTCACGCTTCATAGTGTTAACAGTCCTGTGTTGAGCGATGACAGTGATTTGTGGAAGTGAAAAGCATTATTACCCAATACAAGGTAAATCTAGTTTTCAGCAATGTACAACAAAGTGAAAGTTATTCAATTAATGTACACAGAAGCTCTTTTGTGGTTTCCTGCATGAAACTCTAAACGCTGCAGagatatttttagtatttctaCTATTGTTTGCAGTTGACTGCAACTAGCACGGTGGCTGTACTGTGAACATATTTGTAttgttgaaaatatttctgtgtgtgttacagAGTGTGATTAACCAATAATATAACACtccattgaaataaaaaaaaaaaacatatatatatgaa

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2274 lncRNA downstream 132059 6982959 ~ 7003701 (-) True G1553
TU2262 lncRNA downstream 132772 6958686 ~ 7002988 (-) True G1544
TU2245 lncRNA downstream 275494 6859889 ~ 6860266 (-) True G1532
TU2244 lncRNA downstream 277699 6857795 ~ 6858061 (-) True G1531
TU2242 lncRNA downstream 279652 6855795 ~ 6856108 (-) True G1529
TU2399 lncRNA upstream 9502 7147982 ~ 7169421 (-) False G1642
TU2378 lncRNA upstream 11805 7150285 ~ 7152480 (-) True G1632
TU2396 lncRNA upstream 23781 7162261 ~ 7164721 (-) False G1642
TU2398 lncRNA upstream 23843 7162323 ~ 7164721 (-) False G1642
TU2397 lncRNA upstream 29097 7167577 ~ 7170022 (-) True G1642
XM_043238266.1 mRNA downstream 152 7134391 ~ 7135608 (-) True zgc:174945
XM_043238204.1 mRNA downstream 1478 7071589 ~ 7134282 (-) True trpc5a
XM_043238223.1 mRNA downstream 8353 7071589 ~ 7127407 (-) False trpc5a
XM_043238197.1 mRNA downstream 8353 7071589 ~ 7127407 (-) False trpc5a
XM_043238213.1 mRNA downstream 8353 7071589 ~ 7127407 (-) False trpc5a
XM_043238247.1 mRNA upstream 2853 7141333 ~ 7143853 (-) True LOC122344694
XM_043226871.1 mRNA upstream 49086 7187566 ~ 7196661 (-) True cfap221
XM_043222404.1 mRNA upstream 59053 7197533 ~ 7203087 (-) True crfb15
XM_043236006.1 mRNA upstream 65524 7204004 ~ 7295829 (-) False dmd
XM_043236011.1 mRNA upstream 65524 7204004 ~ 7295638 (-) False dmd
XR_006250919.1 other downstream 8353 7071589 ~ 7127407 (-) False trpc5a
TU2105 other downstream 594377 6539528 ~ 6541383 (-) False LOC122342514
XR_006251174.1 other downstream 667506 6458051 ~ 6468254 (-) False gaa2
XR_006251170.1 other downstream 861009 6267663 ~ 6274751 (-) False si:ch211-14k19.8
TU1845 other downstream 1022237 6111463 ~ 6113523 (-) True G1270
TU2401 other upstream 23843 7162323 ~ 7169421 (-) False G1642
XR_006250549.1 other upstream 67104 7205584 ~ 7295633 (-) False dmd
XR_006250550.1 other upstream 80506 7218986 ~ 7295679 (-) False dmd
TU2800 other upstream 1464820 8603300 ~ 8607795 (-) True G1926
TU2970 other upstream 1640738 8779218 ~ 8782587 (-) False LOC122351550

Expression Profile