RNA id: XM_043238283.1


Basic Information

Item Value
RNA id XM_043238283.1
length 4221
RNA type mRNA
GC content 0.49
exon number 18
gene id fam184b
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 13398841 ~ 13422240 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCAGTGTGACCCGTGACTCGTAATGTAAGACCGTAGTCACGCCCCGGGTGAGAGACAGGTGTCCGGGCTGGGGGCACATGCCGTCAGTGAGTCGTGTCCCGCGGGGCGGCGGAGCGCCGATGGCATTATCTCGTGCGCCGCGCGCTCACCGGAGGCAGCTTCACGGCGGAGCGGGAGAGTGTTCGCCGGTCGCTGCAGCATGCACAATGCTCTCGGCTGTCGTAAGGACTCTACCTTCAGGATCACGTAGAGGCAACCAGGGTGTTGCGCAGCCCAGTTTGTGATTGATCAGCGTGCTGTAGCGGGTTATTATGGCTTCCAGCTCCGGAAAGATGAACCAACCCCCCGGCGGCAGCGGTGCATGTAACGGGACCGCTATTGCGGATATCCCCAGCGGTGTGAACGTAGAGCAGGAACTGTACGATTATCAAATGCACACGAAAATGTGCAAGAAAATAGCGCAGCTGACAAAGGTGATCTATTCTTTAAACACTAAGAATGAGGAGCAAGAGGCAACTCTGCAGTCGCTACGCCGTGTTGCTACGGAGACGCAGGGCAGCCTCCAGCCAACCACAGGTcaagatgaagaagaggaggagtcGGCATCAATTCTGAGGACACGCCTTCTAGAGCTGCAGGCCACCGTAGaggaaGTGGAGGAGCGGGGACAGAGGGCTGAAATAGAGTATGCGGAGCGCATAGCCATGTTAACCCAAGAGACATCAGATCTGCGCAGAGACTTCCACAACCTGCAGACAGATAGAGACAACCAATACAAATTACTGCAACAAACACAGGAAGAAAACAAGCGCTTGGAGAACGAGTGCCAAGAGCTACGTAGAACCAGAGATGAAGAGAGGAAgcgagaggaggaggagaagatgCATAGagtggaggaggagaggaagagagagatggaCGAGAAGAATCGAGAGTCACAGGAAAGACAAAGAGTAGAGGAGGAGTGTGAAGAGAGGTTGAAAACGGTAAGAAAGGAGCTACAGGCTCtgagggaggagaaagagagaggagagaaggaATGGAAGAGAGATGAGGAGGAGTGGAAGAAGAAAATGAAGGAGATGGAAGAAGAGAGGAGGGAGGAGCAAAAGGCAGCTGAGAAGACACTACAAAAGAGTCTCAACGAACACATCCATCAGTGGCACCAGAGAGAGCAAGAAAACCGCAAGTCCCAGAATGCAACGCTTCAGCAGAGGCTGAGAAAAGCAGAGACGGACTTGGACGTTCAAGAACAGAGGTTGAATGAGAGCAACAGACACTGCAGCAAACTTCAGGAGAGAGTAGAGGACCTGGAGGAGCAGCTGGAGGATGGACGTCACCGGGTGGCCGAGGCTGAAGCTGTGGCAAAGAAGGCAGAGGAGGAGTTAGCTGTAGCCAAAGAACGATTATTACTGCAAGAGAATGAGCTACAGAGCAAGTCAGAAGAGTTAATGAGCCAGAGTTCATCTCAGGTGAGGGTCTCTGCTGAAGTGGAAGAGCTAAGGTCTCAACTCAGTCGTCTCAACATTAGAAACAAAGAGCTGGAGCTTCAGAACAGTGGCCGATCCAATGACCACGCTCGCATGCTTAAACAGCATGCAGATACTCTATCCTCTATGCGTCTGGAGCTGCAGCGAGCTCACACTGAGGAGATCAGACGCCTTCAGCAGGAGGTGGATAGCGAGAGAAAACATGACAGACAGGAGctggaagaagagaagaaacagGTTCAGCAGAAGATGGAGGAAGAGAAAGTAAGGCTGAAAGAGCAGCTACGGAAAGCACTAGAAGAAGTGATACGCAAACATGCCAGCGAACTGAGGCAAGCGCACGCAATGCTGGacacagagaagaagaagacgcAGCAGATTGAGGAGCAGCTGAACAccggagaagaagagagaaagactTTAGAAACAGAGAGGGAGGAGCTACGCAACCAACTACAGCTGTCCAACAGAGAGGAGGAGTTTAATGCACAGAAGGAAGTGTTACAGGCAGAGATTTCTGCTCTACAACAAGAGAGGGACATTCTACAACAGTCCAACCATGGCATAGAGGAAAGAATCAGgCTACAGTTTGAGAAGCAGTTCTCGGATCAGATCGTGGaactgaagagagaaagagaggaagagatcaGAAAGATGAACCAGCAGTGGCAACACCGAGTAGAAGAACTGCAGACACAGtTGGAGGAGAGGAGAGCGCTCTCTGAGAAgatggaaggagagagagagagacggtaCGGTAATGGAGAAATGGACCGAATGAAGCAGGAGATCCAAAAGACAAGAGATATGAACAGCACACTCAGATCTCAGCTTCACTCCACCAttcaagagaaagaaagactgaTGAGGCAGCAGTTACAAGTGGTAAAAGAGGAAGACGAGGACGAGGAGGATGGAAAGGCTACGGGAGAGAGGGAAGGGGAGAGGGAAAAGCGGGGGTGGCGTGAGCGAGAGGAGGAGCTGTTGCGTGTGGAAAGGTTAAATCACCAGCGCGCTCTTCAGGCCCTGGAAGCACAAGCCAATGAAGAACTTCAGTCAGAAAGACAACGCTTGCTCACGCAGCACAAACTACAGCTCGacaagCAGAAGGCAGAGCTGACCCAGCAGCACACTGAATGGGTGAGACAGGTCACCCAGAGACACATGCAGCAGATCGAGGACCTTCAGAacgaaatacacacacacacacaaatgatgGCCCTGCAGCAGGATCTGAAGCAGCAAAACCGCTTACAGTCACTAGAGAGACAGCTGGATGAGAAGAGCAGCGAGGTTCAGGAGCTAAAGAGAGAGAACGAAGACCTGAAAGAACGCATGAGTGCAGTCATCGCACAGAGAGAAGAACAAGATGaccataaacataaacacaagAGTTTCTCTGAGGAACGTGATGAGGCGGGTGAAGCGGTTGGGTCAGATCACAGGAATAACATGGAGAGCGTGAAGAGAGAGCACAGAATGGAGATCCAGACCATAATATCAGACTTCAGCACCGCCCAAACACGACTACAGGCCCGCATAGTTGCCTTGGAAACAGAGTTGAGAGAAAGGGAAGAAAGGGGAAAGAGAAGAGTAGAAGACCTGCACACAATTGCTAAACTGCAGGACAAGCTCAGTGAGAGAGACCAACTCATCAAAAGTCTAGTGGAGGACCTCCACCAGCTATCCCAGCATCCAACTCTGTGCAGCGATGAAATACTGAAGCCTTATGACTCTAGGACGCAAGCAGGGACCCTCACACCTACTATGAAGAAAAAAGGGGTTGAGGAAACTAGCATCCCAAACCTCTGCTCGTACGATGGGGGGTCACCTAAGCCCAAGTGCTCACCAGTTATGGAGCGAAGCAGTGTGGAACAGTGCGGGCGAGGGACCACCCTAACAAggacacacacacccacctcCCCTCATTCTGAACACAGAGCCTCTATCAGACAGAGCCGCCCACCTTCACAAGAAGTGCGACATCAGCCGCAGCTTAAAATCAACTACAACCAGCACATCAGGACTCCAGCTGAGCAGAGGGTTATTGAAACAGGGCCTGATGGACAAGACCCTCAAAAACAGGAGTGGTTCACCAAATACTTCTCTTTCTGAGGTCCCACAAACCTTCGTCCCTATCTGCCCCAACATTTTGAGAACAAGCTCACCAAAGTCTCCTTTTTCTGCATAATTACACTCAACTGCAAGCTAACACCAAATAAGCTTTTCTACAGGATGCATCTCACTTTTATCCTGTTGACCGAACAGCAGCACACAGGCCCAATGTCTTAAAACGTTACAAAGATGAAGAGATTATGCATTGAACCAAGAAGAACTCATCAGAACGATAAAGGACAACAGGACATTAAAGGTCATACAGTGGGTGGTCGTATCAAAGAGCAAAAAGTAGAGAATGGTCCTGTGCTGAGGCTTCTTCCATCCATGTTGTGGTCTATCCTTGCACATTATGCCTCCAGCACAAGGatgatcaaacaaacaaaaaatgaacagGTCTACAGCAAATCCAACATGGACaactattaatttatattttaaaaaaaaatgaactgcCAGGTATGGATCGCTGGAAATGTGGTGTGGAATGCTGAGACTTttcttaataaacaaatgagAATGCAAGAACAGCTGGTTTTGTCATACTATGCCAAAACTGTAACTATCTcaatataattaatgtatatcaataaattacatatttttgttttttaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4440 lncRNA downstream 6374 13392005 ~ 13392467 (-) True G3096
TU4439 lncRNA downstream 6956 13391555 ~ 13391885 (-) True G3095
TU4438 lncRNA downstream 7540 13391065 ~ 13391301 (-) True G3094
TU4437 lncRNA downstream 8496 13390075 ~ 13390345 (-) True G3093
TU4420 lncRNA downstream 85312 13302753 ~ 13313529 (-) True G3080
TU4573 lncRNA upstream 95798 13518038 ~ 13518991 (-) True G3192
TU4572 lncRNA upstream 96213 13518453 ~ 13518991 (-) False G3192
TU4612 lncRNA upstream 361614 13783854 ~ 13786649 (-) True G3211
XR_006251040.1 lncRNA upstream 365191 13787431 ~ 13788918 (-) True LOC122345850
TU4625 lncRNA upstream 403254 13825494 ~ 13878315 (-) True G3222
XM_043243582.1 mRNA downstream 209079 13168159 ~ 13189762 (-) True pds5a
XM_043243590.1 mRNA downstream 209222 13168159 ~ 13189619 (-) False pds5a
XM_043243596.1 mRNA downstream 209462 13168159 ~ 13189379 (-) False pds5a
XM_043244004.1 mRNA downstream 239397 13156838 ~ 13159444 (-) False smim14
XM_043243982.1 mRNA downstream 239563 13154486 ~ 13159278 (-) True smim14
XM_043250221.1 mRNA upstream 11977 13434217 ~ 13451163 (-) True lcorl
XM_043250215.1 mRNA upstream 13657 13435897 ~ 13451163 (-) False lcorl
XM_043250226.1 mRNA upstream 19046 13441286 ~ 13451163 (-) False lcorl
XM_043237014.1 mRNA upstream 166141 13588381 ~ 13781738 (-) True lrba
XM_043240306.1 mRNA upstream 368335 13790575 ~ 13808268 (-) False sh3d19
unassigned_transcript_100 other downstream 9516 13389253 ~ 13389325 (-) True trnar-ucg_69
unassigned_transcript_99 other downstream 10335 13388434 ~ 13388506 (-) True trnar-ucg_68
TU4412 other downstream 107118 13291296 ~ 13291723 (-) True G3072
unassigned_transcript_98 other downstream 108501 13290268 ~ 13290340 (-) True trnar-ucg_67
unassigned_transcript_97 other downstream 108818 13289951 ~ 13290023 (-) True trnar-ucg_66
TU4632 other upstream 419302 13841542 ~ 13842643 (-) False LOC122350606
TU4627 other upstream 460038 13882278 ~ 13884236 (-) False LOC122350629
TU5035 other upstream 1324589 14746829 ~ 14748975 (-) True G3491
TU5081 other upstream 1502845 14925085 ~ 14925363 (-) True G3522
TU5072 other upstream 1598402 15020642 ~ 15029620 (-) True G3515

Expression Profile