RNA id: XM_043238518.1


Basic Information

Item Value
RNA id XM_043238518.1
length 4907
RNA type mRNA
GC content 0.49
exon number 20
gene id ctnnd1
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 20377317 ~ 20401716 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCAAAGCGGTGTCGGTGAACTCCTGCTCCACAGGGGAGGGGTCAGACGCTTCACGGTGGGACGACGAGCGAAGAGAGGAGTGCACAAGGGGAGCGAGATAGATTGTGTGTATGGAGCAGTGTGAGAATGCCGCATCTCTCCTGGCCTCCGTGCGAGAGCAGGAGATGCAGTTCGAGCGTCTGACTCGAGCtctggaggaggagaggaggagcgtGGGGCCCTCCGGTACCCTACCCCGCCCCCTCCCCACCTTGCAGAACGGCCGTGTCACTGGTGATGCAGAGTTAGAACGGCTCAAATTAAGCGAGGGATACATAAACGGGACTCAGTACAGGATGTTGGACCCTGGTCATATTGTTGAGTCGGTTACAGTCGAAGAGGACCCCCGCGATTCAATGCCAATTATTTCGGTTGAAACCAGTGATGACGGCACCACACGTCGCACTGAGACCACAGTTAAGAAGGTCACAAAGACGACTACCACACGAACAGTAATTCCCTCAGTCTCCGACACACTTTCCCTGGATGGCACTGGTTCAGTCACCGGAATATCTGGTTGTAATACCCCAATGGACCGTGTATACAGACCACCGGGCGGCCCCATGGACTACCCCACTGCTACTGTCCCCCGTAACTACCACTATGGACCACCTGGCTATGAAGATTACCGTAGCTATGCTCCTTCTGAAGCCTACGCCAGTCTCAGCCGTGGGACGCGAATGGATGACCGCTACAGGCCCGTGGATGGCTATCGCACGCTGGACTCTGCCTATCGCACCCACAGCCGGCCGCAGTTGGACCCGTACGCAGCCCAGCCCCAGGTAGGACGTATGGGCAGTGCTATGGAGATCTCTGGCATGCAGCGCTTTGTACCAGAGCCATACGGCCTGGAGGACGATCAGAGGAGCCTGGGATACGACGAACCCGATTATGGCATGGGACCACCCATGCATTACAGCACAATGCCCCGGTTGGCACATGCTCACCATGCTCCACCTCCACGTCGGACAGGGTCATATGAGGGCACACTGGATGGTGATATGAGTGGAGCTGGTGATATGTATTATTGGGGAGGAGGAGCTCCGCTGGCTCAGGGAGAGAGAGGCAGCATGGCATCACTGGACAGCACTCTTCGTAAAGGCCCAGCCCCCACGGCATGGAGGCAGCCGGAGCTTCCTGAAGTCATCGCTATGCTCAACTACCGCCTGGACCCTGTCAAAAGCAACGCTGCAGCGTACCTGCAACATCTCACTTTTAAGAATGATAAGGTGAAGTCAGACGTAAGGCGACTGAAGGGGATCCCTGCCCTTGTGTCCATGCTGGATAACCCAAAGAAAGAGGTGCATTACGCAGCTTGCGGAGCACTCAAGAACATCTCCTACGGACGAGATCCAGATAACAAGATAGCCATCAAGAACTGTGACGGGATTCCTGCGTTGGTGCGGCTACTGAGGAAGACAAGAGATCAGGACCTTACCGACACCATAACAGgcactctcTGGAACCTGTCGTCTCACGACTCTGTAAAGATGGAGATCGTGGACCACGCGCTGCACGCCCTGTCCGACGAGGTGATGGTTCCTCACTCGGGCTGGGAGAGGGGGAACGAAGGGGGAGAGGAGAGCTGCAAACCCAGACACTTGGAGTGGGAGACGGCGCTCACCAACACCACCGGCTGCTTAAGGAATGTGAGCTCGGAGCGGAGTGAAGCCAGGAGGAAGCTGAGGGAGTGCTCTGGACTGGTCGACTCGCTCATGTACATCGTCCAGTCACAGATCAACTGTAAAGATGTAGACAACAAGCTGATTGAGAACAGCGTGTGTCTGCTGAGGAATCTGTCCTATCAGGTGCATCGGGAGATACCAGGCTGTGAGCGCTATCAGGAGACGGCTCCTGTCAATCAAGGCCCCGCCCCTTCCCAAAAGGGCGGTTGCTTCAGCTCCCGAAAGGGCAAAGGAAAAAAAGAGGATGATGGAACTTCAGATACCATTGACATTCCAAAGAGAAGCACACCAGCCAAAGGTTATGAGTTGCTGTTCCAGCCGGAGGTGGTGCGTGTCTACACTTCTCTCCTGAAAGAGAGCAAGAACCCCTCGGTTCTGGAAGCTGCGGCCGGGGCCGTGCAGAACCTGTGTGCGGGCCGCTGGACTTATGGGCGGTACATCAGAGCAGTGGTTAGACAGGAGCATGGCCTGCCGATGATGACAGAGCTGTTGTCTCATGGGAACGACCGTGTGGTCAGAGCCATGTCTGGAGCCTTGAGAAACCTGGCCATCGACGCTCGCAACCGTGAGCTGCTAGGGAAGCATGCAGTGCCTAACTTGGTGGCTAATCTGCCAGGCGGTGGTCAGAGCCAGCCTGCGCGAGCTCTCTCCGAGGAGACGGTGGTGTCTGTTCTCAGCACTATGACGGAGGTGGTTGGATCCAGCGTGGAAGCGGCCAAAACCCTGCGCAGCTCCCAGGGCATCGAGAGACTGGTGCTCATCAACAAAGACAGCAACCGCTCAGATCGGGAGGTGCGAGGCGCTGGGCTGGTGCTGCAGATCGTGTGGGGCTTCAAAGAGCTCCGCCGCACACTGGAGAAGGACGGCTGGAAGAAGACGGACTTCATGGTGAACCTTAACCCTCCTAACAACACCCGCAGCAACGGAGGATACGAGGACAGCACCCTTCCGCTAATAGACAGGGGGGGCAAAcaggacagagacagagacatgaTTCCTCTAAATGACATGGgaccagACGCTTACTCTACACTAGACCAGAGAGGAAGGAGAAACACTTTAGATGACACTCTGGATCGCTCTGACAGAGAGGCACCTCAGGGAGGAATGTATGGGGAGAGGCGGGGCTCTTTGCCTCTCTTGGACTCTTATGATGAAAAACTGATCGTGTGCATCACCCGCCGTGAGTTTCCTCCTCCTGCCTACTGTCCCTGCTGAGCCTCTGATCTCATCACTTACGGGACCATAGCCACTAATTGCAACGACCCTTCTGTAGTTTTCAACATTCTCATGTTGTCACTCTTCTGCTCTCTTTGAGATCAATGTGATTCAGAACAGCCACTACTTCAAACGGACTCTTTTTCATGTCAAATAATGGAAAAACTAGGGACTACAAGCTCTATTTAGTCACATCCCCAGCTTATCGAGCtttatgaatcatttcctttttgttttttgcttatgCATCTATTAGATCATTAGTGTAGTATTGGCGTTggtgtttttgatttattttgcttcatCCTGCTTTGTGGTTCACATCGATGAAAAGGTAATGCCAAATTGCATCAATCATATGCGGCCTGcagaaaataatgtatatagaattttttttggtAAGTTTTGTCTCGTTGATGCGTTGCAACGGGCATGAGGCctatttgttgttttctgaaAGCACTAGATGACCACCAATTCCCCTTAAGTTATCCATCTGTAGTTTTTGTGGAGTGTTCGGTCTCTAGGAAGTGAACGCGTTGATGAAGCATTACAAAAGAGGCAGAGGGATGTTAGATCGGGaggttttgtcttttttaaaccAGTAGCATTCAAGAAAGTTCTCTAGTGGTAGGCGAGTaaagttttattcattcagtcaaaATTTGCAAAGCATTCCAGAGCGGGAAAGCTGTTTTCTGATACCCCCCCccctgttttgtctttttaaaattatcaATGACACTTAGCTTCTGTGTGGGAGCTCAAATGTTCCTCGCTCTTGAAGTACAATTAAATAGCCACAAAAGAGAaaatgggaagaaaaaaaaagcctttaactCCGAGACAAATTGTAGCCGTGGTGTTCAATCTgtctgaatataaatgaatgtgtaaATATGACTGTGTCTCACAAATCCACTCTGCACACTTGGAGTGCCTCTCTtgctcagtgtgtgtttgtgatgagCGGTGAACAGGGATGTTTGGCCACCCTTCTGCCTCTTGGTTTCAGTGCCTGTCTGTGTAGAGAGTGAACGAGTGTACATTTGAGGATGTAtatgcattatttgttttttttttttgtttgttttttttcccccctctgaGATCCATAAGTACAGTGCTTGTTTCTTAGactgcataattaaaaatgcacagtaaGTCTGTTGTAGATATTTACTGAATGGAAACTTTAGCACTAGGGGTAatggatgttttgtttttttttgttgtttgttttttataatatatattcccCCTCCCCCCAATGCCTTTTTAATTCCCTGTCTGCCAATCCGCAGCCTAATCCTTCGAGATGCTACAGTCAGCAAAGGAAAGGTCGGCTGTTGACTAAATGGTTGTGAGCCAGGAGTCCGAGTCCTGATGCAAGAGGCTGTTCACAAGTTCAAGAATCAATCGATTGTTCAGTGTTGAGGGAGGCAGataaattaatcttttaattacAAGAAAATTGCATCTCTTTCAGGCAGGATTTAGCCAGATTTCGATTCTAGCTTGATGAGAAAATAAGATGGgtgaaataaaagcacatttaactATATATACCAGagaatatttgttaattttaattattatttttttttcttggtttttgttctgttgctctcttttctatattttatgattggggctgatttttgtttttctggggTGTTGTGGGTGAATGCATATgcaatcagttttattttttaaataaatgcatttacggtttatatcttttaattaaagatgaaaGGAAAAATTCTGTGTCGTGCTGTCAGTTGACATGTTTCTGCAACACTAATATCTGGATCTTGATCATAATTCCTATATTTCAACACTTTACCTTTGGTCTTAAACATTGCACCTTTCTCTCATGGATTGAACATGTAACTTAGcaatactgttctttttttgttttgtttttttttttttttaataaaacgatGATCTTTTTTCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250990.1 lncRNA downstream 111134 20265285 ~ 20266183 (-) True LOC122345304
TU6910 lncRNA downstream 112248 20199995 ~ 20265069 (-) True G4870
XR_006250988.1 lncRNA downstream 219794 20155664 ~ 20157523 (-) True LOC122345298
TU6780 lncRNA downstream 237387 20137072 ~ 20139930 (-) True si:dkey-9i23.16
TU6683 lncRNA downstream 438916 19938019 ~ 19938401 (-) True G4713
TU6996 lncRNA upstream 41258 20442952 ~ 20444794 (-) True G4924
TU7018 lncRNA upstream 57847 20459541 ~ 20460184 (-) True G4930
TU7025 lncRNA upstream 64468 20466162 ~ 20469015 (-) True G4934
TU7047 lncRNA upstream 212222 20613916 ~ 20702298 (-) True G4946
TU7087 lncRNA upstream 301782 20703476 ~ 20711454 (-) False LOC122349798
XM_043238469.1 mRNA downstream 733 20369531 ~ 20376584 (-) False LOC122344866
XM_043238459.1 mRNA downstream 733 20369531 ~ 20376584 (-) True LOC122344866
XM_043239275.1 mRNA downstream 8206 20367129 ~ 20369111 (-) True timm10
XM_043238674.1 mRNA downstream 10766 20355235 ~ 20366551 (-) True unc93b1
XM_043239088.1 mRNA upstream 11897 20413591 ~ 20427811 (-) False cabp2a
XM_043239097.1 mRNA upstream 11897 20413591 ~ 20426996 (-) False cabp2a
XM_043239101.1 mRNA upstream 11897 20413591 ~ 20420430 (-) True cabp2a
XM_043238938.1 mRNA upstream 29114 20430808 ~ 20434371 (-) True LOC122345104
XM_043238579.1 mRNA upstream 43438 20445132 ~ 20450119 (-) True LOC122344926
TU6966 other downstream 8223 20367139 ~ 20369094 (-) False timm10
XR_006250953.1 other downstream 64369 20290873 ~ 20312948 (-) False zdhhc5a
TU6776 other downstream 237387 20137072 ~ 20139930 (-) False si:dkey-9i23.16
TU6779 other downstream 237387 20137072 ~ 20139930 (-) False si:dkey-9i23.16
unassigned_transcript_105 other downstream 264104 20113142 ~ 20113213 (-) True trnae-cuc_4
TU7069 other upstream 282148 20683842 ~ 20686740 (-) True G4958
TU7255 other upstream 1316445 21718139 ~ 21723065 (-) False G5104
TU7256 other upstream 1317406 21719100 ~ 21723065 (-) False G5104
TU7263 other upstream 1318366 21720060 ~ 21766284 (-) True G5104
TU7258 other upstream 1319810 21721504 ~ 21723065 (-) False G5104

Expression Profile