RNA id: XM_043238747.1


Basic Information

Item Value
RNA id XM_043238747.1
length 3003
RNA type mRNA
GC content 0.44
exon number 15
gene id slc43a1b
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 20269043 ~ 20281302 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACCATCCATAAATTGAGTTTGGTTTGGAAAGGTGGGGAGGAGGGTCAATGCCGAGAGCCATTTATAGACAAAACGAGCAGGGAGAGAGAAAGTGCATACAAAACTTGACATATCCTTTTTAGTTTCTACAAACGCGCAAGTGCAACCTGGAGCGCGCGGAGAGAAAAACGCTAAATTATAGCCCCGCTTGCGCGCTGCAAAGGATAAGTAACGCTGAGGAAAACCAGACACATGCCATTGCTATAAATAACAGTGCATAAAACAGTGCGCAATGGCTCCGTCGCTTTCACAGGCCTACAGGAGGCGCTGGTGGATGGCTGTCACATCAATCATAGAAAACCTGCTCTTCTCTGCCGTGTTGTTGGGTTGGGGATCTCTTCTTATCATGCTGAAGAATGAGGGCTTCTACTCACACCTGTGCACAGAGAATGTCACCGAGGCTCACGCTAATGTAAGTTTGACGGAGCGGGCGGTTTGGCTGAGCTGTATTGAGCAGGAGGAGATTCTGAATCTGGGCTTTACGATTGGCTCGTTCATCATCAGCGCAGCCACTCTGCCCCTTGGTGTCCTGATGGACAGGTTTGGACCACGTCCAATCAGATTGCTTGGCAGTTCGTGCTTTGCATTATCCATGGCTTTGATTGCAGTGGCGTCTTATGATCCAAAAGTGTTATCagctattatatttattgctgTGTCCATGAATGGGTTCGGAGGAATCTGTCTAACCTTCACTTCACTAACATTGCCAAATATGTTCGGGAATGTGCGGTCTACGATTCTTTCGCTCATGATTGGCTCGTACGCCTCCTCTGCTGTCACCTTCCCAGGAGTCAAGCTGATCTATGACATGGGCGTCTCTTTTTCTGTTATATTGTGGGTATGGGCAGGGTTTGCCTGCCTCGTCTTCCTCAACTGCTTTTTTAACTGGCCGGGAGAATCTTTTCCTGGCCCTGAGGACATCAGATACACGACAATGGTGAAGTTGACAAGTGAAGAAGAGGGCCAAAAGATGACTGAAGAAAGTTCTTTCACTCAGGAGACTCTTAAAGAGCAAGATTTGACCAAACAACAGCCTTCCACTGATGAAGCTCCCAGCCATGGGACAGCTGCTCAGAGCCAGGTATCCCCTCCCTTTCATCGTTCTGTGTGCTCTCCTATATTCCTGTGGAGCATCATCACGATGGCCATGACCCAGCTCCGGGTCATTTTTTTCATGGGCGCTATGAATAAGATGTTGGAGTTCCTGGTTACCCATGGCGACCCCAATCccTCAGAGGAGTTGGTGAAGGAGGCAGAGGAGAAAGtgaatCTCTACTCGTCCATCTTTGGCACTCTTCAGCTGCTCTGTCTGGTCTCCTGTCCTCTGATTGGCTACATCATGGACTGGAGAATGAAGGAGTGCGAGGACGTGGTGAATTCAGCAGAGGGTGAAAAAAGTCCCTCCAGGCATCCAAAAAGGGACCGAAAGATCCAGAAACTCACTAACGCCATCAGAGCGTTCATCTTAACTAACACTCTGCTAGTCATCTTCGGCATCATCTCTCTCATTGACAATCTGCCCGTACAGGTGGTGTCATTTGTTCTTCACACTGCAGTTCGAGGTTTTTTTCACTCCTGCTGTGGTGGGCTCTACGCTGCTGTcTACCCAACCAATCACTTTGGCACTCTGACGGGCTTGCAGTCCACGATCAGCGCTGTGTTTGCCCTCCTACAACAACCACTCTTCATGTGCATGGTGGGACCGTTGCGGGGTGATCCTTATTGGATCAACTTGGGCCTGCTTGTGTTCTCATTGGTTGGATTCCTGCTGCCCGGATACCTCTTCTACCACCGGAGACAAATTATGAAGGAGAAGGCAGCGCTTAATAGTCTGTCAATGAGCCAGACGGTGCAGGAGAGCGACAGTCTCAACCAAACAAGCGATTCAGCAAAATATCAATCAAACGGGAACGCCTGAGGTGGAAAACATTGACAGTTGAGGCGTATGTGAATTATACGCCTGGTTTATGAATTATGATATCATGGCACTTCAGAAACGGAATTATTGACTTCGTGTTCAGTCACTGTGGAGACTtgacaaatataaaacagtgttaaaaaatagcaaatgtGCAATTTAAAGCTTCAGTCGAGCCTTTGAATGAGTGACTGAGCAGAATGTGTTTTCAAGTCTTTTATTATCAATCCGAAAAACATTATGCCTTCACTTAAAGTATGTAGTTTGCCGTTTTcttcaattattaatattgcatgGACACTTTGAAATGTCCATTAAAATGGTAGCAGAACCAGAAGGgagacttatatatataaaaaaattataaatgtcctTCTGTGAAGCACCTCCTTTCCTCATCACTTTTGTTAGTCAGTATGAATCAACATTTgctccatttatttgaaaagcagtgttattgtttttcagGGCATTTTATAACATATACAATCATTCTGTGTTTAGAATCTAAAATCAAAACTCGATCCAACTTGCTTAAAAAGGTAACCTTACCTTTAGTCCTTGTGTCTCGATCAAAAAGCTGAAATTTTCAGGAGAGTAGCTCACAAATGATTGGGAACTTTTATTCTACCATATTCAAGTCTTCATTATGTATGTGCAGGACACAAACATAAtcaaattaacaaaatgaaaataacacgccatttaaagaatgttttccTAACAGGTAAAACTTACCATGACATGGAtcgttttaatattaaaagtttgCTATCCCTCTTTTACTAAGCTTGAGAGAAATGCAGCGTTACGTGAAAATGGTAAATACAGATGATTCTTTTTATTGCAGAGGCCagtttttttactatatttgttgTTTCGAAAGTACTGTTCTGTATGTTTCAGGACTGTAATCATGTTACCGGTTTCAGTGATTCTACTGATTGTCCAACATAATGGTGCTTGTGCTGTGCTCACGactgtaaatatgcctgacaggggggaaaaaaatcaaataaattcaaatattttctcaCAAATCA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6839 lncRNA upstream 25700 20241829 ~ 20243343 (+) False pold4
TU6730 lncRNA upstream 125132 20142936 ~ 20143911 (+) False si:dkey-9i23.14
TU6649 lncRNA upstream 268495 19999341 ~ 20000548 (+) True G4686
TU6643 lncRNA upstream 284062 19984725 ~ 19984981 (+) True G4680
TU6642 lncRNA upstream 285916 19982804 ~ 19983127 (+) True G4679
TU6848 lncRNA downstream 72676 20353978 ~ 20354347 (+) True G4817
TU6851 lncRNA downstream 76638 20357940 ~ 20417720 (+) True G4820
TU6854 lncRNA downstream 84557 20365859 ~ 20366583 (+) True G4823
TU6860 lncRNA downstream 96023 20377325 ~ 20379332 (+) True G4829
XR_006250989.1 lncRNA downstream 120549 20401851 ~ 20404258 (+) True LOC122345303
XM_043238493.1 mRNA upstream 3974 20244740 ~ 20265069 (+) False si:dkey-28b4.8
XM_043238484.1 mRNA upstream 3974 20244765 ~ 20265069 (+) True si:dkey-28b4.8
XM_043239267.1 mRNA upstream 25694 20241818 ~ 20243349 (+) True pold4
XM_043238701.1 mRNA upstream 53304 20210937 ~ 20215739 (+) False si:dkey-9i23.6
XM_043238986.1 mRNA downstream 2940 20284242 ~ 20288623 (+) True tmx2b
XM_043239203.1 mRNA downstream 70348 20351650 ~ 20355234 (+) True cryba1l2
XM_043238901.1 mRNA downstream 125117 20406419 ~ 20413525 (+) False slc43a3a
XM_043238893.1 mRNA downstream 125162 20406464 ~ 20413525 (+) True slc43a3a
XM_043238569.1 mRNA downstream 151702 20433004 ~ 20444796 (+) True vwa11
unassigned_transcript_103 other upstream 156529 20112442 ~ 20112514 (+) True trnak-cuu
TU6436 other upstream 746644 19521084 ~ 19522399 (+) True G4528
unassigned_transcript_101 other upstream 1690212 18578750 ~ 18578831 (+) True trnas-aga
XR_006251260.1 other upstream 1986282 18247250 ~ 18282761 (+) False dclk2a
TU7127 other downstream 1040163 21321465 ~ 21361275 (+) False LOC122348864
TU7152 other downstream 1309575 21590877 ~ 21620580 (+) False rnf24
TU7172 other downstream 1350913 21632215 ~ 21635052 (+) True G5037
unassigned_transcript_107 other downstream 1603134 21884436 ~ 21884508 (+) True trnak-uuu
unassigned_transcript_108 other downstream 2777730 23059032 ~ 23059103 (+) True trnae-cuc_5

Expression Profile