RNA id: XM_043238770.1


Basic Information

Item Value
RNA id XM_043238770.1
length 2893
RNA type mRNA
GC content 0.42
exon number 8
gene id zgc:66472
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 20470299 ~ 20476282 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGGGAAGGATATGGGGTGTGTGAAAGAACAAGGAATGAGGAGAAAGTGTGGTTTAAACCAAATGACCTCAAAttagatgcattttaaagattaatatttGGTGTCTGATTTACAGATCATTCCATGTAAATTACGATCTTAAATTTATAAGCATGTAGAGAATGAATCAAGgatgaacaaatatttgactatgaaaataaatgcatgaaatccTTTTACACACGTTTCAGTTTTCCTGCTCAAAACACCTGGGTTAGCCTACCGTTTTGTTTctatgtttgtatttacattaacaaaatgtttttttacgaCACATACCAACAACACTACGGCTAAAAATGCAGTTTGACCGCAGTGTATCGGAATACGGTCACGCTGATATTTGTTTCCCGCCGGCCTGTTATGCGGGGACGCTTCACAGTCCACACAGCGGCGGAGGCGTTCAGAGCCTTCGTCGAAGAAACTGTGCAGTCACCATCATTAAACGATTCCCGCTTCAGACTATTAATGAGgTATCCTGTAATTGGGCCTCTGTGGGACACTGACGTTAAGTCTGCcctttctgtgtaaaaaaaaaaaatacaagtgtATCACCATGGAAGTGGAGGATGCTTTATCGGCTAAGTTCAGGGTCCTGATTCAAGGGCTTATGGTGACGACAACCTCAGAGATAGTCAAAATATTTAGCGAAGTGCTGCTGGAGAGCAGAGTGGAGATCAGCCGAAGCTGGAGGGAGATCGACTTGTTGAAGCAGCAGTTGGAAGAATGTGAGCAGCAAAAGAGAGAGGCCATCATTAGGGCCCAGAGGAGTGAACTCAAAAGAGAAGACGACGAGGTGGAAGTGTCACGTGTGAGTTTTCAGCCTGATGTAGAGAGCTCTGACACTGTCACGCCAGTGGGGCCTGAAAACAGAGAGGAGGATGTCTTCGAACCAGAGACAACACAGTCGGGCCCACCAGACCGAAAGGTTCAAAAAGTCTGTGCTATTGCTGAAAACAGCAGGGTGTGCCAAGAGCCGAAATGCACACAACATgtggtaaaacaaaaaatagtttgtCCCACCAATGTACCACGAGTTAGAGGCCGCAAATCATCAAGCAAGCCCTCATCACAGCCCACAACCAAAACCATTGGAAATGGACCATCTCCGAGTGAGGACGTTTTAACAAAAAGCCCAAAATCAGAGGTgatgatgaaaaaaagtaaactaatCAAATCGCAGATGCACGCTAATGACTCTAGCGTTGCTCGTGGTCTTCGAGACCGACATCAGCTCAGCATGCAGAGGCACTGTCTGTGTTGTTCATCGGACGAGTGCGACCTCCAGTCTAGCCCCTCCAGAGCCCTGCACCAAGTCCCTAGTGTGTATATCTGCCGTAAATGTGAGAAGAGGTTTAAAACAGACCTCCTGTTTAAGAGTCACAATTGCCCGATGCCTCAGAATTGTAGCAGGTGTGGGCAGATGTTCACTACTCTTCAGGGGCTCAACGCACACAGTCAGGAAGTTCAAGCTCAGGTCATCTGCAGTCAGTGTGAGCAAACGTTTTCCACTCAGTGTGCTTTAACCGTGCACAGACGCATCCATGCCAACCTCATTCTTCCCAAGGAAATTAAGGCCAAGAGGTTTGAGGTTCGTCTCCAGAGAATCTCAGACTCCCAGCTGGAGGCTGCTTTGTCTTCAAAAAGCTGTCTCTTGCAAAACGAGTCTTCAAAACAGGATCTTTTGAGTGAACCGCAGAATATGGCTACCGCAGATACAAGTCCTGCGATCAAACGCAGTGCAGAATCCCCGGCAATGAATGAACCTGAGACCAGCGAGACACTGCCATCCCAAAGTGTAGAGGAAGGCCCGGACTTCAGTGCTGAACAGTCAAGTGTCAGGAAAGTGTATGCAGTCATGTCATCCGCCTCGTGCCAAATTCAAATGAGTGAGGATGCAAATGGGTCCGAGTCACCGGTTGTGCatgaaacagaaaaatcaaCAGATAACGAAAAGCATGCCAATTCAAGTGATGAGTCGGGGCTCCATTCTCTTCCAAGAAAGCGAAAAATGTCagATTGTACTCACGATGCATACAATGGTGTGTTTCCTGTTGAAAATATTCTGAGATGGAGAAACAATAAGggaAGAAATGAAGTTCGGGTCAAGTGGATGCCTTGCACATTGTGTGGGGCAAAATTTCAGAATACATGGGAACCAGCAGAGAGCTTTCCAGGTTATTTGGACGAGAAGAATGAAGAGGCAAAGAAAAACTAGAAGGATCAAAACTTATATTATATTGACTGTGTTTTTATGAGGTTTTCTGATTATACACTACAAGAATGTATGCTTTACAATGCAGTTAATGTGATGTGTATTACTTTGTTCggttgtttttagttttcttaTAAGTACCATATAgataaatgcattaaagtgaaaaactttttaatacatagttttaaatgctttcgATGCTTTCTTGTTATAGCTTGACTTATTGTGATCTGCCAAAAGTTAGTGTATTGTTTTTGATATTTAGTATTTGAACAGCCGTCTTTGTATTTACTTCACTGCAATCTTTGATTAAGGGTTCAGTTACATGTTTACATGTTGTTGTTGGTGAAACTTGtggatgtattttttaaaaaaatgtttttttcaatgatGTATTAATTGGCTAAACTATTGGGGGGTTAATGGCTTACACCGAAAGTAACAGTACATTACAAAAACACCATTAATGTTgattctctcttccttttttcaACTTGTATGTTATTATACCAAAGAATACAGTTTGTTAAAGgcatattttagtaaatttgtGGAAGTGTAAACACAGATGAAGAAGGTGGTAAATGTACTGGAAAACCCCACAAGCTCAAATAAACTGTTTCAAACGGGCAAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6886 lncRNA upstream 9731 20460337 ~ 20460568 (+) True G4853
TU6885 lncRNA upstream 10116 20459499 ~ 20460183 (+) True G4852
XR_006250989.1 lncRNA upstream 66041 20401851 ~ 20404258 (+) True LOC122345303
TU6860 lncRNA upstream 90967 20377325 ~ 20379332 (+) True G4829
TU6854 lncRNA upstream 103716 20365859 ~ 20366583 (+) True G4823
TU7095 lncRNA downstream 243997 20720279 ~ 20721036 (+) True G4976
TU7103 lncRNA downstream 452015 20928297 ~ 20930642 (+) True G4984
TU7113 lncRNA downstream 540938 21017220 ~ 21020726 (+) True G4991
TU7118 lncRNA downstream 600757 21077039 ~ 21077896 (+) True G4996
TU7156 lncRNA downstream 1091820 21568102 ~ 21571149 (+) True G5028
XM_043238800.1 mRNA upstream 138 20461140 ~ 20470161 (+) False si:ch73-109d9.1
XM_043238830.1 mRNA upstream 1278 20461141 ~ 20469021 (+) False si:ch73-109d9.1
XM_043238841.1 mRNA upstream 1278 20461141 ~ 20469021 (+) False si:ch73-109d9.1
XM_043238810.1 mRNA upstream 1278 20461149 ~ 20469021 (+) True si:ch73-109d9.1
XM_043238819.1 mRNA upstream 1278 20461149 ~ 20469021 (+) False si:ch73-109d9.1
XM_043236525.1 mRNA downstream 100563 20576845 ~ 20580374 (+) True si:dkey-22i16.9
XM_043235477.1 mRNA downstream 104770 20581052 ~ 20582782 (+) True scpp9
XM_043234745.1 mRNA downstream 109742 20586024 ~ 20587825 (+) True odam
XM_043244745.1 mRNA downstream 117524 20593806 ~ 20603242 (+) True ambn
XM_043249788.1 mRNA downstream 127958 20604240 ~ 20605941 (+) True scpp7
unassigned_transcript_103 other upstream 357785 20112442 ~ 20112514 (+) True trnak-cuu
TU6436 other upstream 947900 19521084 ~ 19522399 (+) True G4528
unassigned_transcript_101 other upstream 1891468 18578750 ~ 18578831 (+) True trnas-aga
XR_006251260.1 other upstream 2187538 18247250 ~ 18282761 (+) False dclk2a
TU7127 other downstream 845183 21321465 ~ 21361275 (+) False LOC122348864
TU7152 other downstream 1114595 21590877 ~ 21620580 (+) False rnf24
TU7172 other downstream 1155933 21632215 ~ 21635052 (+) True G5037
unassigned_transcript_107 other downstream 1408154 21884436 ~ 21884508 (+) True trnak-uuu
unassigned_transcript_108 other downstream 2582750 23059032 ~ 23059103 (+) True trnae-cuc_5

Expression Profile