RNA id: XM_043238923.1


Basic Information

Item Value
RNA id XM_043238923.1
length 2919
RNA type mRNA
GC content 0.44
exon number 4
gene id si:ch73-109d9.3
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 20455020 ~ 20459072 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTTCATAGCTGTGTATTCattgaaaaataatgacatacCTTAGATTGTCTGTCACACAATCAAGCATTTGTTGTAGAAACGTgagtaatgcaaaagtaatgaatataaaaaaaaacaatttataaacaATTTCCTTCAATTTTGAACTGTCAAACATGCCAGTTGTTGTAATGGTAATGCAGATACAGTAATTATGTGTTATGTTCAAATCAACCAGGAGGCCTTCATCCACTGGAGCCGTGTGAGGCAGTTTTTATGGATGGATGCGCTTGAATGGGCTTCTTTTGGACtgttggggggaaaaaaacacccacCCATTATacagcttggaagagccaggatacattttgaATTAGGTTTTATAtggtttgttgttttgtccgtttagattttaacaatatttagttttagttatcgTTGTGTATATAAGGAGAAACcgattaatacatttaaattttttaatagttattttttttaatttaacgttTAAGTAACAGAATGTTTTTATgacttgtttttcatttgccGCGTTGTTGTATTCTAAATTCTGCAaaatagtaatttaatttaagtgtgtaatttaattaatagttatttatttaagtgtgaaagtaatgtggttttgttttgaaaattctagtggttttgttttgaaaattctAATCGTTTTGTCTGTAACAAAGCGGGAGAAAACCGTTATGTCCAACAAGGCCGCCGTACAACCCTTGACGTCACCCACAACAACATCATTGTCCGTCTGCTCAGCTCGTTCTGACACTGATGCTGAACGATGCACTAATCAAACATCTAGGTTCACacattcacaaaataaaccagGTAGCATGCACTACAGCCATCTGGACATTGTGCGACAGCCGTTCGCGCCTAAAGGACATCCGTTTGTGCTCGCGCTTCATATTGTCAGGCAGATGTAACGAGCTCGATGCTAACTAACCTTAACACTTTGAGGATTTTATCATCGGGGTTTGACTGACTGGCCGTGAAAGTGTGAAGTGCGAAATTGAGTTCCCGAAATACTCGTGCCTGAAACGAGCACTcgatagaaaataaaaacatttgagACTCGGCTGTCTGCGGTTATGGAAACTGTCCTTAAGACCACCATGTACGAGATCACCCGGCTGGTGGAGGAGAGCTTCTTGGAGCAGATGGATCGAGGCAAGCGAGAGGCGGAGGTGTTGAAACGGAGGCTGATAGTGTCGGAGGCCAAACTGAGAGAACGGGAGAGGTTTAAGAGGGTGAGGTGTGTGGACTGTGGTCGGACAGCGGTGTCCAGGAGGAGGATACTACTCCGAGGCCCCGAAACACAGAGCAGTCTGGACCACAGACTTGTTGTAAAGCAGGAAAATGCCACTGACAATAGCTGGAGGTGCAGTACCAAGGGAAGCACAAATCAGGAGCAGCCTTCAGCAGCTTCAGAAACTATACAAAATGCTGATCAAGTGTGTGAACCTAAACCTGGAGGAGAAGTGAAAGAGGAAGCGACAGAGGGTTGTGACCTGCAAGCTCGTCTAGTAATACATCCTcagatacacaaacaaaaagatccTCCGGGCTGCGTTGAAGAGACCGACGGACTCCGCAATGCAGATCCTGAGTACAAACCAGGTGGCAGATCTTGCACTGAAAGACCTGTGGACGAGGAAGAGGTCAGACACAGAAACCTCCCAAAATGGTTTGACCCCAAAGCAGACCCTTTAGCGCGGTCCTCTGTTTCGCAGCCAAAACCAGTCAGGACCTCGGTGTCTTCAGAGTCTCCGGGTTTGAGACCCCAAGTGGGCAGCGTAGACTCAGGGCCTGTTAAACAGGAAGTTGTAGTGATGCTTCCACCAGACTGGGAAGATATGGAAAGGATCAGGCCTCCGGTGGTTTCTGCTCGTAACGGTGCTAAGAAAGCACAGCTGGATCTTCAGCCTGGAGATCCTCTCGCCGCTAGGCCTCAAATACAGGAGAGAGTTTCCTATCCTGCTCCTCCCGTCAAGGTTCAGAGCCTTGCATCACAAACCATGCAGCATCTCAGATCACCCGTTAGGAAGAACGCAAAAATCGTTCTGCATCCTAATTCGGTCGTGACGGATCACGAGGCGGTTAATATCGACCGCGTGCAATCCGTCTGTAAAGCCCTTCCAGCTCCAAAACCCTCTCCCGTCCGTCAGTATCCCGAAGGAGCCGCTACAGGTGAAAGAAGTTTCAGCACGCTTCACCCAGGAAGAAGTCTGCCGCAGATGGTCGGGGTGAGGGTTCAAGGGGACACGCGGCACCATTCGGCAAAGACGATGCACAATTGCAGCCAGTGTGGAAAAGGCTTCTCTCATCTGTGTCACCTCAGAGCTCACCAGCAAATTCACACAGGTGAGAGGCAGTTCTGCTGCACCATCTGCGGACGGAGTTTCACCAAACTGAGCAACTTGAAAGCACACCGCAGGGTTCACACCGGCGAGAGACCTTACATCTGCACAGACTGCGGGAAAAGGTTTACACAGAAATGCAACTTGAAGAGGCATCAGAGAATTCACTCTGAGTTCACGCACTCTAGTGTATGACGAGACCTGGACGGCTGATAGCGGTAGAATCTGGTACTTTACACATTAACATATTAATTGATGTTTTGTTGACcggttaatttatttttattatcatgcATCATAATGAAATGACTGGACTTTATGCTCTGAAAATTGTTCTGTAGTGATGTGACTAGATCACTCAGGGGCAAATAGCAGTTCTGTCATGAAAAATGGTCAAATATTAAAGCAGAGCACCTTTTCATTCCCTCTGGATGTAACAAGCTATTTCTCACAAAATATAGGCCCctaaaattaaaaggaaaaaagttttatattgctgtcaaatgattccttgtgattaatcatatccaaaataaaagtttttcttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6851 lncRNA upstream 37300 20357940 ~ 20417720 (+) True G4820
XR_006250989.1 lncRNA upstream 50762 20401851 ~ 20404258 (+) True LOC122345303
TU6860 lncRNA upstream 75688 20377325 ~ 20379332 (+) True G4829
TU6854 lncRNA upstream 88437 20365859 ~ 20366583 (+) True G4823
TU6848 lncRNA upstream 100673 20353978 ~ 20354347 (+) True G4817
TU6885 lncRNA downstream 427 20459499 ~ 20460183 (+) True G4852
TU6886 lncRNA downstream 1265 20460337 ~ 20460568 (+) True G4853
TU7095 lncRNA downstream 261207 20720279 ~ 20721036 (+) True G4976
TU7103 lncRNA downstream 469225 20928297 ~ 20930642 (+) True G4984
TU7113 lncRNA downstream 558148 21017220 ~ 21020726 (+) True G4991
XM_043238863.1 mRNA upstream 141 20451158 ~ 20454879 (+) True si:ch73-109d9.2
XM_043238569.1 mRNA upstream 10224 20433004 ~ 20444796 (+) True vwa11
XM_043238560.1 mRNA upstream 10224 20433004 ~ 20444796 (+) False vwa11
XM_043238901.1 mRNA upstream 41495 20406419 ~ 20413525 (+) False slc43a3a
XM_043238791.1 mRNA downstream 2047 20461119 ~ 20466018 (+) False si:ch73-109d9.1
XM_043238800.1 mRNA downstream 2068 20461140 ~ 20470161 (+) False si:ch73-109d9.1
XM_043238830.1 mRNA downstream 2069 20461141 ~ 20469021 (+) False si:ch73-109d9.1
XM_043238841.1 mRNA downstream 2069 20461141 ~ 20469021 (+) False si:ch73-109d9.1
XM_043238810.1 mRNA downstream 2077 20461149 ~ 20469021 (+) True si:ch73-109d9.1
unassigned_transcript_103 other upstream 342506 20112442 ~ 20112514 (+) True trnak-cuu
TU6436 other upstream 932621 19521084 ~ 19522399 (+) True G4528
unassigned_transcript_101 other upstream 1876189 18578750 ~ 18578831 (+) True trnas-aga
XR_006251260.1 other upstream 2172259 18247250 ~ 18282761 (+) False dclk2a
TU7127 other downstream 862393 21321465 ~ 21361275 (+) False LOC122348864
TU7152 other downstream 1131805 21590877 ~ 21620580 (+) False rnf24
TU7172 other downstream 1173143 21632215 ~ 21635052 (+) True G5037
unassigned_transcript_107 other downstream 1425364 21884436 ~ 21884508 (+) True trnak-uuu
unassigned_transcript_108 other downstream 2599960 23059032 ~ 23059103 (+) True trnae-cuc_5

Expression Profile