RNA id: XM_043239101.1


Basic Information

Item Value
RNA id XM_043239101.1
length 1603
RNA type mRNA
GC content 0.47
exon number 7
gene id cabp2a
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 20413591 ~ 20427811 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTATAGCATCATTTCCCtgtttatacattattttatacattagtTTTCTACACTGACGTTTATAATAAGTACTGATTTGGCTTCATCTACTGATCCATCTATCCTCTCATCTGAccctttgacctctgacccctgacACTGCAGCTCATCACCCTTAAAACCCCTCTGATGGCTGTCTACCTGCTCTCTACAATCTTTCTACAATCCTACGCTCCCTTATCAGCACTGCCAGCTGCGTTGCACTCACCATGTAATCTGGAATGTTGCGGATTATGCAGACCTTTCCCACCCCTTcgctatctttctctctctgtttctctcctcatccctccatccctccctATTTTTTACCGTGCCAGTCACTTGCAGTAGAACAAGTGCGATTAGAGTCCTTCACAAGGCAAAGCGAGGACGTGAGAGAacatggaaaaagaaagaagggggaAGAAAAAACAGACAACAGATGCAAGGTCCGAGAGCATCAGGATTAGAGTGCTCAGAAAACCCCAAATGCTTTTTCTGGATGAAGGAATTGTTTTGATTGCTCCCCAAAGCATGCCGTGACTGTTTTCGGTGGTCTTAGCATCACTACCCTTCACCTCTTGTTTAAGCAACTCCGCCCCCTCTTGGGATATTCCGGCAACAGGGATCGCGTGTCGCAAAGTTTATGTAATAATCTGAGGACAGGAATCAAGAGTGAGTGATAAAGAGGGAGGGGGAGGGACGGAGGGAGGGACAGAGATGACAAGAAAGAGTGGGAGCAGTGAGAACTAGAGAAATACAAATGATGGGAGCGAAGCCATCTAAAAGAAGCAGCATGAAGAAGGGGGTCCCGCCCCTGGAAGGCAGTGGTCTGCCATTGGCATCCGCCATGTTAGGAGGCAGCGGTGATGCGGCAgctgaggatgaggatgatgaagagtTGGGCCAGCAGTTTGAGGAGCCGATATGTGCTCTGGTTCAGAACTGTACCATGCTACACAACATCGTGGGCCCAGCCTGCATCTTTCTCCGACAAAGCTTCGCTCAGGCTCAACtcGACAGAGATCTACGGCCAGAGGAAATTGAAGAGTTAAAAGAAGCCTTCAGAGAATTTGACAAAGACAAGGACGGCTTCATTAGCTGTAAGGATCTGGGGGAGTGCATGAGGACGATGGGCTACATGCCCACAGAAATGGAGCTGATTGAACTCAGTCAGCAGATCTGTGGTGGTAGAGTGGACTTCGAGGACTTTGTAGACCTGATGGGTCCAAAGATGCTGGCTGAGACAGCAGACATGATCGGAGTGAAAGAACTGAGAGATGCTTTTAGAGAGTTTGACTCCGACGGTGATGGTCAGATCAGTCTGGCCGAACTGAGGGAAGCCATGAAGAAGCTGATGGGAGAGCAGCTCAACCACAGAGAGATTGATGAGATCCTCAGGGATGTTGACCTCAATGGAGACGGGCAGGTTGACTTTGAAGAGTTTGTCCGAATGATGTCTCGCTAACTTAGAAGACCCATGAAAAAGGGAGAGAACAACCAGCACGTCAACTCCTAATGTGAAGAGTGAAATACTATGAGTCTGTTTAAATTAACTAccttatgtaattatttaaaccTG

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23531 CABP1_2_4_5; calcium-binding protein 1/2/4/5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250990.1 lncRNA downstream 147408 20265285 ~ 20266183 (-) True LOC122345304
TU6910 lncRNA downstream 148522 20199995 ~ 20265069 (-) True G4870
XR_006250988.1 lncRNA downstream 256068 20155664 ~ 20157523 (-) True LOC122345298
TU6780 lncRNA downstream 273661 20137072 ~ 20139930 (-) True si:dkey-9i23.16
TU6683 lncRNA downstream 475190 19938019 ~ 19938401 (-) True G4713
TU6996 lncRNA upstream 22522 20442952 ~ 20444794 (-) True G4924
TU7018 lncRNA upstream 39111 20459541 ~ 20460184 (-) True G4930
TU7025 lncRNA upstream 45732 20466162 ~ 20469015 (-) True G4934
TU7047 lncRNA upstream 193486 20613916 ~ 20702298 (-) True G4946
TU7087 lncRNA upstream 283046 20703476 ~ 20711454 (-) False LOC122349798
XM_043238536.1 mRNA downstream 11875 20377317 ~ 20401716 (-) False ctnnd1
XM_043238518.1 mRNA downstream 11897 20377317 ~ 20401694 (-) False ctnnd1
XM_043238529.1 mRNA downstream 11897 20377317 ~ 20401694 (-) False ctnnd1
XM_043238502.1 mRNA downstream 11897 20377317 ~ 20401694 (-) False ctnnd1
XM_043238524.1 mRNA downstream 11897 20377317 ~ 20401694 (-) False ctnnd1
XM_043238938.1 mRNA upstream 10378 20430808 ~ 20434371 (-) True LOC122345104
XM_043238579.1 mRNA upstream 24702 20445132 ~ 20450119 (-) True LOC122344926
XM_043242532.1 mRNA upstream 272835 20693265 ~ 20695767 (-) True cisd2
XM_043243368.1 mRNA upstream 507862 20928292 ~ 21264688 (-) True ctnna2
XM_043246136.1 mRNA upstream 961271 21381701 ~ 21384924 (-) True LOC122349971
TU6966 other downstream 44497 20367139 ~ 20369094 (-) False timm10
XR_006250953.1 other downstream 100643 20290873 ~ 20312948 (-) False zdhhc5a
TU6776 other downstream 273661 20137072 ~ 20139930 (-) False si:dkey-9i23.16
TU6779 other downstream 273661 20137072 ~ 20139930 (-) False si:dkey-9i23.16
unassigned_transcript_105 other downstream 300378 20113142 ~ 20113213 (-) True trnae-cuc_4
TU7069 other upstream 263412 20683842 ~ 20686740 (-) True G4958
TU7255 other upstream 1297709 21718139 ~ 21723065 (-) False G5104
TU7256 other upstream 1298670 21719100 ~ 21723065 (-) False G5104
TU7263 other upstream 1299630 21720060 ~ 21766284 (-) True G5104
TU7258 other upstream 1301074 21721504 ~ 21723065 (-) False G5104

Expression Profile