RNA id: XM_043239508.1


Basic Information

Item Value
RNA id XM_043239508.1
length 6354
RNA type mRNA
GC content 0.46
exon number 3
gene id stox2a
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 19475990 ~ 19518637 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGCTCCTTTATCcgttgtgtgtgtttctgtgattgAGAGTGTTGAAAAGCTGATTTGGGTGAAGTGAGGACTTGAGTGCAGTGAGGACACCATGTACCCTGTAGTGCAGTCTACCCTGTCCGTGCTCCTTGTCTGTGTACCCACTCCGAGTCCAGAGATCCTGCGGCACACGCTGAACATGTTGGTACGGGAGAGAAAGATCTACCCCACACCAGAAGGTTACTTCATTGTTACTCCACAGACCTACTTCATCACCCCCTTCCTCATCCGCACCAACAGCAAGTGGTACCACCTGGACGAGAGGCATCCGGAgcgacagcagcagcagcagcaacaacaacaacaacagcagcaacaacaaccgcagcagcagcagcagcctccACCTCAACAGCAATGCACATCGCCACAATCTGGAACCATCACTCCCTCCACCTCTGGCTGCGTACGAGAAAGGCCTAACCCTAAGAACCACTGCGACTCCTATAACGCCTACCGTGATGAGGTGCCCAGCATTCATACCTCTACGATTCAAAGAAAATCCCCAAAAGAACCCAAAGGAGATCCCCCTTCATACCCACAACCCCCACCCCCTCCGCCTGCCATTCAGCACCCACCTGACCCCGCCGACAAGAGCAAGAGCATGACCGCCACCTTCTCTTACAAGACAGACACATTGACCAAGAAGAAGGAAGGCAGCGGTGGGGGCAGCAGTGAGAGGCAGTCAAAGAAGTTTGGGTTGAAGCTGTTCCGCTTGAGCTTGAAGAAGGACAAGACCAAACAGCTGGCCACCTTTTCAGCACAGTTTCCTCCAGAGGAGTGGCCCTTGAGGGACGAGGACACACCGTCGGCGGCGGCGATCCCTCGTGAGGTGGAGATGGAGATCATCCGCCGCATCAATCCGGACCTGACGGTGGAGAACGTGGCCCGTCACACAGCTGTCATGAAGCGGCTGGAAGAGGAACGAGCTCAGCGCTGTAAGGCCAGCTCCTCGGCACAGCACAGTGCCCGTAGTCGCCGCAGCAGAGGCCACCGGCGCGTGCCGCACGGGAAGTCGCGTTCGCACAGCAAGACGCGGGCTTCTCGGGGAGACCCCTCTGAGGGCTCCAATCTGGACCTGCCTGCAGTCAGCCTGGAGAGGGACTATCGTTTTTTCAGTCACTCTCTGGTACGCTCACCCAGAGAAGGAATGTACACAGTGGAACGCAGAAGCGGTGGTGCCTACCTTGTCCACAGCAATCCCAACATCGCCGAGTCACACTTTCCTGTCACCCCGGAGTGGGATGTTTCGGGGGAGCTGGCAAAGAGGCGGACAGAGATGCCTTTCCCTGAGCCTTCGCGTGGGACGTCACATTCTAGAGTGCACCGGAGCCACAGCCACACTCAGGACCGCAAGTCACGCAATGAGCGGCCCGACAAGGCGAAAGAGCGATCGCGTTCTATGGACAACTCCAAGGGCCCGCTGGGAGGTGGGAGCTCTACGCTTGGCACGGCTGAGGATTACGACCGCAGTCCTGATGACAGAAGCCGCTACTATACCGATGACGGGACGCTGAGGGCCTCCTCTCAGAAGGCCCCGCACTACTCGTGCATCATGTTCTCGGCTGCCAAGTTCAGCTCTGAATTGTCTGTACCAGATATGGGCAAATTGAGTCTGGATGATTCAAGGCTATGCAGCCCTCTAGAACGAAACAAGAGCAGGGACAGCCTCCCAGCCTACAGTGACCTGAAGGCCCTGTCGCCGAAGCCTTTGGCTGATGACTACTTCCAGTGCAATACATCGAATGAAACAATCCTTACTGCCCCGCTGCCTCTGGGCAAATCTGACCATGACACTTTAACCCCATCTGACGGAATCCGCAAGGGCTCTCCAGCTGACCGGCAGACACCGCACCTCACCTCTCCTCACCCCTTGGAGTACAAGGAGGACTCCTCCACCAAGGGACACAATGGTTCCGGCAAACCCACACCGAGCCAGACACCTGAGCCTATGCCCAATGGACGTTTGACACAGCACCAACACAACACTGACCCAGGGGGCCGGGGAGGTGGCGGTAGCTCCGGTGGCGGGGTGGACAAGAGGAAAGAGATTTTTAGTAAGGACACTTTGTTCAAACCGCCACACAATGTTTTGACTGTGAGTTATGTGGACAGTGGCTACTCAAAGTCAGGCACTTTGCGTAAGACTCCGCACATGAAATCATCCGAGGTCCTTGACACTCTGGAGACCCAACAGCCACCTAACTCCACCCCTTTGTCTGCTTCTGCCCTGGCACCTACAGGCACAGAACAGGGTGCTCCCTCCACATCTGAAGCTGCTTTTGACTATTACAACGTGTCAGATGATGACGATGAGGAGGAGGCAGAGGAGGCCTCCCGTAAGGAGGCTGCCCCGACGGAAGCAAAGGGGCGGGCAGGGGCCGGAGATGGTGGTGGAGGCGGAGGGACCATGCAGTGGTTGCTAGAACGGGAGAAAGAGCGGGATTTACAGCGGAAGTTTGAGAACAACTTGACTCTGCTTAGCCCTAAGGAGAGTGAGAATAATAACAGCCAGAAGTCGGCTCACTCGGCCCGGCTGGACAGCATGGACAGCAGTAGTGTGACTGTAGACAGTGGGTTTAACTCCCCTCGCACACGGGAAAGCCTGGCGTCCAACACCTCGAGCATCGTGGAGAGTAACCGGCGACAGAATCCGGCTCTAAGTCCAGGCCACATGGGTACCACCAGCATCGGCCCCCCATTCAGCTTCCGTGCAATCCCAGAGCCCCCTACCACGCAACCTGAGAAACTGCAGAAATCCCCCAACTGCCTTGCCTCCATCACCAGCGTCTGACATGGGCCCGTCTGGGTTGACGTAGGGTCAGGGTGATCTGCAATGTTGGGGTGCCTAAGCGCAGGAGGTTGGGTGACTCCCTCCATCAAGCACCTCGACTACACGGGGACTGTTAAACCCACAGGCATGGCTTCCAGAGACTGTTCCCACAGCATAAATggtcactgcaaaaaaaaaaaaaagagaaaaaaaagggaaaaacatgGAAAAGGAAATTTCTCATCATAGGATTTACCTTAACAAGCAATTAATCAGGAAATTCTCCAGTCGGAATCAACCGTTATTTTCAAAATAGGCTTGAAGTAACTGGtaatttaacaatgttttattttcaagagtATTTTTGTCAGTCACAGATTAGAGATCATCCAGCCAATGGATTACGTTTGCACGCATTAAGAAATAGATGCTGATGTGCAGGTCAAAGGTCTTACAGATTTGTGATATTGGTATGCAGTACAAGTTAAAAAATGAGACATAAAAGCTCTAATCTGAGCAACATTTAATTCATGGTTCATAAAGTTGTATAAtattcctaaaaataaatacatttatcatgACACTGTTAGCTACATTGGTGACACAATAAGAATCATACTCACAtgcttaataaaacaatacatagaCTGAATTAGTGGAAAAAAATGATCTCgtctgaaattaaattttttttttttgaaaatggactattgatttttctttttcttttttactacCCAAAATTATGTGCATACAATTACTTTGTATGCACCTTTACACTACGTAATGGATTTACCTGTTTCATTAAAGTTCATATTTAATCTCAGGTCATGAATAGTTAACTCTCCTAAGAAGAGGTAAAAACATCAGTCTGTAATCATGTTTCTGTAGATCGTTTCACCAATCTTTGTTTCTTAAGGGAATAAAACACTCTCTGtagacaaaatatataaatgatttcaaCTGCATTTCGTCTCAGCTTAATTCAGATGTAGattcttttaattgttattcccttttgaaataaaaacaggtgAGTGTTTTACGCCGGTGTGAATCTGACACCTAGTCTCATGAACCAGGACACTTGTGGATGTCATTGTTGGTTTGGAAACATGCTTGTCTTCTGTGTAGCTTGATGGCTTTATTTGTTGTCACGAAAGAAGGAGGATGTTGGAAATCGCATTGGCGGGAACACGGGTGTTGCGTCCAAAACACTCCAAGGAAAGGTCATACAGTTCTCTTCCTTTGGGCCACAGCGGGATTCAGAGACTAGACCCTTTTGCTGCTCTgataaaacctttattttttaacatttccttACTTCAGTTGAACCCAGACCACTATGGTGATTtattttcaatctttttttttgttgttgttctttttgttgttttccttgGGAATTGAGCTGTTACTCAAACCATGTCCCTGACCTCAATGGAAAAAATGGTCGACAGATGATATGGCTAAAAATTCTGCCCCAGCCAACGCgtgatatgtatatatgtatcaCAATCTTTTCATGATTtcaataaatgcttattttaggTTGAAACAACTCAGTCAATGAAAGTATGTACTAATAATTTGTTCCGCTATTATTTATCATTCCTTTCAAATGTCACAGTTGAATAGATTACACCAGGTCTTGACCTGCTGGGTGGAATATACAATAGGTCTCAAATCCACGAGCAAAGGCTCATTTCAAAGATTGAATTGAACATTAAAATACTTGCTTTGAACATTTGGACTATGGCTTTAACTGTTTGGCGTGCCATCTCAAGAATGCACCAGAATTAATGGTTGTGTCCCTTCTGGCAGTGACTGGGTGAGATTTGGGAAAGAAAGCAGAGCTCATGTCGCATCCATTGGTGCTATTATGTGGTGATCCTcccttttttttagcttttctttctttctttgcccATACCCTCCACGGTTTTGTTGCTTCATGATGAGTGTTCAGGTGGATATCCTCCAGTGGGACTTGTGTTTGAATCACTTTCAGCTCAtccacacatatacacacacctgcAATCAGCCATGCAAACTACCCTAGTCcccacatacatgcacataacTAGCTACCTCCACCACCTGTGTAACAACAAGGTAGGGACGTGTACAGATTTGGATTCTTTGCCTGTGGAACACAGCGCTATCAGCCTCTTCTCTGTGAATGTTGACAAGGAGCGGCGGACATTGTAACTAAGAGGACTTATTCTAAAGTAATCAGTATTAAGTGCTGTAGTTTCAACTCgatttttctcagtttttgaCAGAAGTGTCTTTTACTTATTTGCAAGTTGTGTATAAATCTGTCTAGCACCACATCAACAGAACATTTCCAATTTTATGTTTTCCCTCCAATTTGTTTCAGTTCTCTGCTGTTCCCTTCACACGAATATCTGTTTATCTGCTTCATTATTTCAAGCCCAGTGAGTAACCATACCTCTAGTTTGTTAAAATGCATCTAGATGGAAATCGAGGGACTGTGTTCTATATTATAAATAAGCACCTCAACAGATATTTTAGGAGTTGAGCCTAAATCAAAAACAGTTTACCTGCCTTCTGCTTTTTGGCGACACTGATTACAGTAGCATTGTTTTCAGTTTCCCACCTTATATTCGCGAGGTCAGTGGTTAGGGTCCAAACAGCCTCTTAGACCCTGTAGTTGGAGGTGGGATGAAGATTGTGGAAAGATACAAGCCTAGTAGTATTAAATGGTAATTTTATATCATTGCTAGACATCATAGATGTACATCAGAGAGCAACATTAGTCAGAACAGGCACCTCATAAGGTCTGCTCTATAAATAGATACTTTCTCAAATCATTGCAAcagagatttatttaaaacaacgaTTTAAGTCCAGAAGTAAATTTCAGTTCAGCGATAACTAAACCTCTGCAGAACGTAATcacttttgaatgtttatttgttagACATTAATACAAACACGCGGCCTCCTTTACTCCTTTACCAAGGCTCTGTCAGAGGATGCATTTTGGATATCTgtcacattttgtaaaatttagttttaatttgaacCCCCTCCTTCATCTggtaatcattttctttttatttccgTTAGTTTTTGATAGATAAAAGGGAGTAATGCAGCCAAGACTGCcttgtaaaaaaacatgtttgcacTGAAATGCCTGGCCTCTGGTTGCTGTTAAGTCCATCCAAGACGGATGCtttgtttatattgtaaaatatttcatatgaaataaaaatgaccatgaAATGTCTTCCCTTAACATTATGGATTTTAGAACCACGTCAGACAACATTGTTTCTAAATGGTGACAGTGTACAGTATCATACTGTAAATGAAATCAATCTGCCATGCTTAGTataacttcaaaacaaaaactgaaagatATGAGGGATCTTTTTGTAATGTCtataatatttgaaaagaaGTCCCTATTTGTGTAGTAATGGTGTTTCATCGTTGTGGTAGTGTATGTGATAAACCCAGTTGGGAGATTGTGTTACTTTTTCagacaataaaataacatgtttggTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006248565.1 lncRNA downstream 35131 19415107 ~ 19440859 (-) False LOC122332954
XR_006248569.1 lncRNA downstream 35131 19415107 ~ 19440859 (-) False LOC122332954
TU6410 lncRNA downstream 35181 19413249 ~ 19440809 (-) False LOC122332954
TU6411 lncRNA downstream 35181 19413249 ~ 19440809 (-) True LOC122332954
TU6307 lncRNA downstream 603146 18869332 ~ 18872844 (-) True G4433
TU6525 lncRNA upstream 43139 19528751 ~ 19529251 (-) True G4590
TU6533 lncRNA upstream 54972 19540584 ~ 19541350 (-) True G4596
TU6534 lncRNA upstream 57364 19542976 ~ 19544360 (-) True G4597
TU6537 lncRNA upstream 67016 19552628 ~ 19553146 (-) True G4600
TU6551 lncRNA upstream 93952 19579564 ~ 19580861 (-) True G4607
XM_043244426.1 mRNA downstream 2169 19469503 ~ 19473821 (-) True tmem134
XM_043244450.1 mRNA downstream 11789 19445918 ~ 19464201 (-) False dctd
XM_043244440.1 mRNA downstream 13555 19445918 ~ 19462435 (-) True dctd
XM_043248025.1 mRNA downstream 560054 18885507 ~ 18915936 (-) False vegfc
XM_043238995.1 mRNA upstream 35727 19521339 ~ 19523454 (-) True ing2
XM_043230490.1 mRNA upstream 50352 19535964 ~ 19539134 (-) False cdk2ap2
XM_043224890.1 mRNA upstream 68828 19554440 ~ 19571705 (-) False si:dkey-117m1.4
XM_043225589.1 mRNA upstream 68828 19554440 ~ 19571684 (-) True si:dkey-117m1.4
XM_043238431.1 mRNA upstream 89602 19575214 ~ 19578675 (-) False cntf
XR_006250498.1 other downstream 1595573 17815824 ~ 17880417 (-) False znf827
XR_006251556.1 other downstream 3402070 16069177 ~ 16073920 (-) False alg11
TU5142 other downstream 4245104 15230539 ~ 15230886 (-) True G3571
TU5072 other downstream 4446370 15020642 ~ 15029620 (-) True G3515
TU5081 other downstream 4550627 14925085 ~ 14925363 (-) True G3522
TU6528 other upstream 50360 19535972 ~ 19539146 (-) True cdk2ap2
unassigned_transcript_102 other upstream 611343 20096955 ~ 20097026 (-) True trnae-cuc_3
unassigned_transcript_104 other upstream 627138 20112750 ~ 20112821 (-) True trnam-cau
unassigned_transcript_105 other upstream 627530 20113142 ~ 20113213 (-) True trnae-cuc_4
TU6776 other upstream 651460 20137072 ~ 20139930 (-) False si:dkey-9i23.16

Expression Profile