RNA id: XM_043239553.1


Basic Information

Item Value
RNA id XM_043239553.1
length 2624
RNA type mRNA
GC content 0.47
exon number 10
gene id agpat3
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 22800579 ~ 22818012 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATCGGACAGGAAGTCCCACGACTAGatgcaatgtgtgtgtgctgtgcgtGGATGGATAACGACACATCTGAGCAGCAGCACAGAGGCTTAGATGCCAGTTTCCGACAGCATTATCACATTGCGTCGCATTAAACGGAAAAGCACGAATCCTCCACGCGGATCCACTGATGACATTTAAGCAGGTCGGTGGTACTAAGTGAAGGGCCGTGTAAAAGAGGGTTGTAGAGACGAACTTGCTGTGctgtgtgtgtgtgtgtgtgggggtgagtgtgtgtgtgtgtgcgcgtgtgtgcgtgtgtgtgtgtgagtgggggtgagtgtgagagtgtgtgtggaaggGGCTCTCAGTCATGGGTGTGGTGGCATGGCTGAAGAGCCTGTTCGTCCTGCAGCTCTTGATTGGCTTTGTGTTCGTGGTGAGTGGCCTCATTATTAACTTCATCCAGCTGTGCACCTGTGTGCTGTGGCCCTTCAACAAACAGCTGTACCGCAAGATCAACACCAGACTGTCCTACTCGCTATGGAGCCAGCTGGTGATGCTGTTAGAGTGGTGGTCTGGCACAGAGTGTATGCTGTACACCGATCAGGCCACGGTGGATAAGTTTGGTAAAGAGCACGTCATCATCATCCTCAACCATAACTATGAGATCGACTTCCTGTGTGGCTGGACCATGTGTGAGAGATACGGCATACTGGGGagTTCTAAGGTTCTGGCTAAACACGAACTGCTGAAAGTTCCTCTAATCGGCTGGACGTGGTACTTCCTTGAAATTGTTTTCTGCAAGCGGAAGTGGGAGGAAGACAGAGATACTGTGTTCAGTGGGCTGAACCGTCTTCGAGATTACCCAGAATACATGTGGtTCCTGCTGTACTGTGAAGGAACGAGATTTACGGAAAAGAAACATCAGATAAGCATGCAGGTGGCTGAGAGTAAGGGCCTTCCAAAACTGAAGTACCACCTGCTGCCCCGCACCAAAGGATTCACCACTACACTTCAATGCCTCAAGGGAACAGTGAAAGCTGTGTACGATGTCACGCTGAACTTCAAAGACAAGCAGAACCCGACCCTGCTGGGCATCGTTAACGGGAAGAAATACAAAGCGGACCTGAGCGTCAGGCGCTTCCCTGTGGAGGAGATACCTGATGACGAGAAGGAGTGCGCTGACTGGTTACACAAGCTCTACCAAGAGAAGGATGCGTTACAAGAACACTATGAGAAGGAAGGCTGTTTCCCTGGCCCCACCATCGAACCCAAACGTCGAGTTTGGACACTGCTCAACTTCCTGTTTTGGGCTACTCTCCTGCTTTCTCCGCTTATTAACTTTGCCTGGGATGTCTTTGTCAGCGGCTCTCCCCTCCTCATCATTGGCTTTATGATCTTCCTCATTGTCGCTTCTGTAGCAGTTCGTCGGCTCATCGGTGTAACCGAAGTGAAGAAGACAGGATCCAGCTACGGCAACACAGAGGCCAAGAAGGAGAACTAAACATTTTCACCGTGTCAACACCGTGTGGCCACTGTATCGCTCACCCTAGAGTCCAGCCTCAGGCACAGAGCTGCCCTGTGTGCAGTTATCcttctttttacaaaaaaaaaaagtaattaaaaaaaaacgaatgaaatattaaaatctaaGCATTGGGAGGTATATAGGGGTATAACTGTAGATTTAACTTAATACGCTAGTCTATAAACATTACGATCATTTTTATGAACCAACTAAATGGGAAATAGAGGGGAAGAAACACTCGTCAGCTGCGGATCGATGACGAAATGCTCGTCTTCTCCGGCAGAGAAAGATGAGATGAACTAGAGAGACCAACCGCTGATACGCCTATCAACCTATCAGTGACTTGTCCctcctgtttagccccgcccttTAACATAAGACCGCCCCTTTCCCCAAACAAGCCCACTTCTTGTCATAGTTCTCCATTAATATTCATCATCTCCAGAAGTGCTTTGTAACACTTCCTTCACTGCATCTACAATATCAGTAGTTGTTTCCTCACAACGTTCCTCTTCCGATCTTCACCCTGAAACCACTCGGACTGATTTTCTGCGATCAGAAATGAGGAAGATCGCTTGAGGAAGACAAACAGCCCAGACGATCAACAATGATGGTCACGATCCATCCAACAAATGAACTGTTGTAGATCTTTGGTCTACTGCAGCTGGAGTGACGTTGGTGAAAAGTTTATGACCAACATGGTTAAAGATGTGGACTGAGCAAGGAAAAGCATGTCTTCTGTACTCCCATTTTTGAGACCTTTTCACGATGGTGTCTTAACCCACTGCGTCACCATTGTATTACTGGCTATGCTAAATAAGCGATAAATGTTTTCTACCAGTGTACTCCAAATCACCTACAGCATCTGTTTAGTTAGTGAGCAGTTTTGTCAGGAAATCGAAGGCCCATGGACCATGCTTCAGTTGCCCAATCTCTCTAGCCATGTGTAACTTATGAAATGCAGGGGTTGAAGAGCGACGGTGTGAGAGTAGCTGAATGACCAAGAAGAAAATGAGTTCTGTCAATAAAGAACGAGTATGAAAACTGTTTAGTGTGAACTAATGACACTAATGGTTTGTAAATAAACTCTAGAAGTTTCTTCTTGACTCAAATCCA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003841 1-acylglycerol-3-phosphate O-acyltransferase activity molecular_function

KEGG:

id description
K13523 AGPAT3_4; lysophosphatidic acid acyltransferase / lysophosphatidylinositol acyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250464.1 lncRNA downstream 35464 22759628 ~ 22765115 (-) True LOC122341430
TU7825 lncRNA downstream 118483 22681649 ~ 22682096 (-) True G5445
TU7789 lncRNA downstream 179362 22619809 ~ 22621217 (-) True G5422
TU7780 lncRNA downstream 195892 22603757 ~ 22604687 (-) True G5413
TU7768 lncRNA downstream 261059 22539269 ~ 22539520 (-) True G5408
TU7852 lncRNA upstream 20944 22838956 ~ 22839592 (-) True G5464
TU7853 lncRNA upstream 23790 22841802 ~ 22842024 (-) True G5465
TU7854 lncRNA upstream 33000 22851012 ~ 22851348 (-) True G5466
TU7851 lncRNA upstream 46827 22864839 ~ 22865794 (-) False itsn1
XR_006250508.1 lncRNA upstream 155667 22973679 ~ 22978634 (-) True LOC122342025
XM_043228879.1 mRNA downstream 2086 22796292 ~ 22798493 (-) True dleu7
XM_043241291.1 mRNA downstream 65392 22732039 ~ 22735187 (-) True spryd7a
XM_043239827.1 mRNA downstream 69695 22715525 ~ 22730884 (-) True kpna3
XM_043241154.1 mRNA downstream 86032 22711727 ~ 22714547 (-) True ebpl
XM_043250116.1 mRNA downstream 90765 22701331 ~ 22709814 (-) True rcbtb1
XM_043246171.1 mRNA upstream 1334 22819346 ~ 22837408 (-) True pdxkb
XM_043236511.1 mRNA upstream 33696 22851708 ~ 22860712 (-) False pknox1.2
XM_043236500.1 mRNA upstream 33696 22851708 ~ 22860711 (-) True pknox1.2
XM_043236475.1 mRNA upstream 42856 22860868 ~ 22864691 (-) True si:dkey-22n8.3
XM_043236484.1 mRNA upstream 42856 22860868 ~ 22864525 (-) False si:dkey-22n8.3
TU7773 other downstream 249629 22539684 ~ 22550950 (-) False atp11a
TU7673 other downstream 471650 22259439 ~ 22328929 (-) True G5356
unassigned_transcript_106 other downstream 916389 21884118 ~ 21884190 (-) True trnat-ugu
TU7268 other downstream 1004141 21774634 ~ 21796438 (-) False LOC122348907
TU7269 other downstream 1027817 21724387 ~ 21772762 (-) True G5108
TU7878 other upstream 95888 22913900 ~ 22916405 (-) True G5468
XR_006251794.1 other upstream 954611 23772623 ~ 23916448 (-) False LOC122351696
XR_006251793.1 other upstream 954611 23772623 ~ 23916446 (-) False LOC122351696
TU8134 other upstream 1214851 24032863 ~ 24034499 (-) False G5624
TU8141 other upstream 1214851 24032863 ~ 24041997 (-) False G5624

Expression Profile