RNA id: XM_043239631.1


Basic Information

Item Value
RNA id XM_043239631.1
length 3608
RNA type mRNA
GC content 0.60
exon number 22
gene id gart
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 1942061 ~ 1961643 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtgtgtgtgaTGCATGTGTTGTGATGGGTCAAGAACTCCGACTGACTTCGAGCGAATCGAATCTTTTAAACGGTTCGCTTCGGTTCAAGCGAAAGCTTGATTAAACACCGGTATTTACcgctttgtttttgttaaaagtaCGCATATCGCATGAAATATTGCCGGTTTTATGATCCCAGGTTTTTTTGCGGCTCgattcaaacaaaacattaaaaagaatctATTTAACAGAACGAATCATTTCGCGAATCGAATGCGTGGCGTGTGAATTATCAGGCGGCGCACGTGGTTCGTGGTGGGAAACACACGCTGGTCTTCTGTCCGTCACTCATTCACGACCAGAACACCCCAGGATCCCGGCTGTAGCCCGCTGTTCATCAGAAATCACAGTTTGTCCAGCAGACGTGATGGCGGAGCGCGTGCTGGTCATCGGCGGCGGTGGACGGGAACATGCGCTAGCGTGGAAGTTAGCTCAGTCGCCGCACGTTCAGCAGGTGCTCGTATCCCCCGGCAACGCAGGAACCGCCAACAACGGGAAGATCTCCAACTCCGAGGTGTCCGTGAATAATCATGCGATTTTAGCTCAGTATTGTAAGGACCATAACGTGGGGCTCGTGGTGGTTGGTCCAGAAGTTCCTCTGGCTGCTGGTGTTGTGGATGACCTGATGGCCGCTGGAGTGCTGTGTTTCGGTCCGTCGGCGAAGGCAGCTCAGCTGGAGGCCAGCAAGAGTTTCTCCAAAGCCTTCATGGACCGTCACAGCATTCCCACGGCGCGCTGGAGCTCCTTCACCGAGCCGCAGGACGCCTGCAGATACATCCGAGGtgctGAGTTTCCCGCTCTGGTGGTGAAGGCCAGTGGTCTGGCGGCTGGTAAGGGAGTAGTAGTCGCTGGGGATCAAGACGAGGCCTGTCAGGCTGTTCTGGACATCATGAAGGACAAGGCGTTCGGCTCTGCGGGCGAGACGGTGGTGGTTGAGGAGCTGCTGGAAGGAGAGGAGGTCTCTtgtttgtgtttcagtgaCGGTGTCTCGGTGTCACCGATGCCTCCGGCTCAGGATCACAAGCGTCTGCTGGACGGAGACCAGGGGCCGAACACGGGCGGGATGGGCGCCTACTGCCCCACACCACAGgttTCCGAGGACGTTCTGCAGGAGATCAAGAGAACGGTTCTTCAGAAGACGGTGGACGGCATGAGAGAAGAGGGAACTCCGTATGTGGGGGTGTTGTATGCGGGGCTGATGTTGACTAGCGAGGGACCGAAGGTCCTGGAGTTTAACTGCCGCTTCGGTGACCCCGAGTGTCAGGTGCTGATGCCGTTGCTGGAGTCAGATTTGTACGAGGTGCTGATGAAGACGCTGCAGACGGAGCTGAGCTTCGGTCCGATTCGGTGGCTGCGGGACAGTGCGGCGGTCACCGTGGTCATGGCCAGCGGAGGATACCCGGCCGCGTATAAGAAGGGTCTGGAGATCACCGGTTTGTCTCAGGTGTCCGAGATGGGCATCCAGGTGTTTCACGCGGGCACGGCTCAGAAGGAAGGGGGCGGGGTTGTGACGAGCGGGGGGCGTGTCCTGACGGTGACCGCGGTCCGGCCCACTCTCCAGAGCGCTTTACACAGCGCTAACGAAGGAGTCGCGGCGATTAGCTTCCCTGACGCCGTTTACCGCCGAGACATCGGCCACCGCGCCATCGCTTACCTCAGCCGCAGCAGaggaCTGACGTATAAGGACAGCGGGGTGGACATCTCTGCAGGGAACAGGCTGGTGGATCTGATCAAACCTCTGGCCAAAGCCACGGCTCGTCCAGGCTGCAACGCGGAGCTCGGAGGCTTCGCCGGTCTCTTCGATCTGAAAGCTGCAGGCTTCACGGACCCGATCCTGGTGTCCGGGACGGACGGGGTGGGGACCAAGCTGAAGGTGGCTCAGGCGAGCGGCGTCCACGGCTCTCTGGGTCAGGACCTGGTGGCCATGTGTGTGAACGACGTCCTCGCTCAGGGGGCGGAGCCGCTCTTCTTCCTCGACTACTTCTCCTGCGGCCGCCTGGACGTCCGAGTGGCGTCGTCCGTGATCTCCGGCATCGCAGACGCCTGTCAGACGGCCGGCTGCGCTCTGCTCGgaGGTGAGACGGCGGAGATGCCGGGTGTGTATGGGCCCGGTGAGTATGATCTGGCCGGGTTCTGTGTGGGAGCCGTGGAGCGTGGAGTGATTCTGCCGAGACTCAAGGACATGACGGAGGGAGATCTTCTGCTCGGCGTCTCCTCGTCTGGTCTTCACAGCAACGGCTTCAGTCTGGTTCGTCAGATCCTGCAGCGCAGTGGCCTGCGTCTCGACTCGCCCGCTCCCTTCGGACGCCCCGGACAGACCGTCGGAGAAGCTCTTCTCACTCCCACGAAGATCTACAGCCGTCTGCTCCAGCCGGTCCTGCGCAGCGGCGCCGTCAAGGCCTTCTCTCACATCACCGGAGGAGGACTCCTGGAGAACATCCCTCGAGTTCTGCCTCCGGAGCTGACGGCGGAGCTGGACGCCTGCCGCTGGAGGATCCCGGCCGTCTTCTCGTGGCTGCAGCAGGAGGGCGGTCTGTCTCTGGACGAGATGAGCCGCACGTTTAACTGCGGTCTGGGCGCTGTGCTGGCGGTCAGTAAACCGGACGCTCAGCGTGTGCTGCGTCTGCTGCAGGCCCAGGAGGAGGCCTGGATCGTGGGGTTCCTCGTCCACAGACCGCCCGGAGCTCCGGCGGTCCTCATCAGGAACCTGGAGCGGAGTCTGAAGGACGGTCCGAGTCGTTCTCCGGACACCAGCGCTCTACAGAACGGAGCGGACCTCGGAGAACAGGCCTCCCGCCGAAGAACCAGAGTCGCTGTCCTGATCTCAGGAACCGGAACGAACCTGCAGGCGCTGATGGAGCAGGCGAAGAAGCCCTCGAGTTCAGCCGAGATCGTGCTGGTCATCTCCAACAGACCGGCCGTCGCTGGACTGAAGAGAGCCGCTCTGGCCGGCATTCAGACACGGGTGGTGGATCATAAACTGTACGGCAGCAGAGCCGAGTTCGACGGCACCATCGATAAAGTCCTGGAGGAGTTCGGCGTGGAGCTGGTGTGTTTGGCCGGTTTCATGCGCATCCTCACGGGAAACTTCGTCAAGAAATGGAGCGggaAGATGCTGAACATTCACCCGTCTCTGCTGCCGTCCTTCAGAGGAGTGAATGCTCAGAAACAGGCTCTTCAGGCCGGAGTCAGGCTCACCGGCTGCACCGTGCACTTCGTGGCGGAGGAAGTGGATGCGGGAGCGATCGTGGTCCAGGAGGCGGTTCCCATCCTGCTGACGGACACCGAGGACAGCCTATCAGAGCGCATCCGGGAGGCGGAGCATCGCGCTTTCCCAGCAGCCCTGGAGCTGGTGTCGAGCGGCGCGGTGAAGCTGAGAGACGACGGGAAGCTGGTCTGGAGCCCGAGCGCTCAGGGATAGATCCTGTAACACTACTGTACTCCACATTCCACTCATTCCTGACATTCTCTGATGACCAATAGTTCTTGATGTAGATGAACTTCATTCTGTGCATGTAACACATCTTGATCAGTATTTGCTCTTTGCATTAAACTTGCACTGCCCTGA

Function

GO:

id name namespace
GO:0043010 camera-type eye development biological_process
GO:0009113 purine nucleobase biosynthetic process biological_process
GO:0006189 'de novo' IMP biosynthetic process biological_process
GO:0043473 pigmentation biological_process
GO:0032259 methylation biological_process
GO:0009790 embryo development biological_process
GO:0005737 cytoplasm cellular_component
GO:0008168 methyltransferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004637 phosphoribosylamine-glycine ligase activity molecular_function
GO:0004641 phosphoribosylformylglycinamidine cyclo-ligase activity molecular_function
GO:0004644 phosphoribosylglycinamide formyltransferase activity molecular_function

KEGG:

id description
K11787 GART; phosphoribosylamine--glycine ligase / phosphoribosylglycinamide formyltransferase / phosphoribosylformylglycinamidine cyclo-ligase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480 lncRNA upstream 5414 1936173 ~ 1936647 (+) True G320
TU478 lncRNA upstream 8917 1931816 ~ 1933144 (+) True G319
TU469 lncRNA upstream 36098 1905652 ~ 1905963 (+) True G312
TU401 lncRNA upstream 330885 1541322 ~ 1611176 (+) True G273
TU396 lncRNA upstream 456418 1485146 ~ 1485643 (+) True G270
TU595 lncRNA downstream 119829 2081472 ~ 2081820 (+) True G404
TU599 lncRNA downstream 157473 2119116 ~ 2119391 (+) True G408
TU610 lncRNA downstream 212679 2174322 ~ 2175616 (+) True G415
TU654 lncRNA downstream 313364 2275007 ~ 2275341 (+) True G450
TU640 lncRNA downstream 314349 2275992 ~ 2276271 (+) True G439
XM_043239643.1 mRNA upstream 440 1937450 ~ 1941621 (+) True LOC122345473
XM_043239653.1 mRNA upstream 440 1937450 ~ 1941621 (+) False LOC122345473
XM_043246036.1 mRNA upstream 48865 1712042 ~ 1893196 (+) True zgc:152904
XM_043246053.1 mRNA upstream 48865 1712042 ~ 1893196 (+) False zgc:152904
XM_043246046.1 mRNA upstream 48865 1712042 ~ 1893196 (+) False zgc:152904
XM_043247501.1 mRNA downstream 191593 2153236 ~ 2171533 (+) True LOC122350785
XM_043247510.1 mRNA downstream 191593 2153236 ~ 2171533 (+) False LOC122350785
XM_043241076.1 mRNA downstream 216568 2178211 ~ 2184501 (+) True adamts1
XM_043240894.1 mRNA downstream 224178 2185821 ~ 2192072 (+) False cyyr1
XM_043240464.1 mRNA downstream 231278 2192921 ~ 2219736 (+) True appa
TU311 other upstream 500395 1439073 ~ 1441666 (+) True LOC122327253
TU309 other upstream 500622 1439073 ~ 1441439 (+) False LOC122327253
TU310 other upstream 500622 1439073 ~ 1441439 (+) False LOC122327253
TU190 other upstream 821340 1119719 ~ 1120721 (+) True G136
TU24 other upstream 1763861 177716 ~ 178200 (+) True G10
TU616 other downstream 224216 2185859 ~ 2192464 (+) True cyyr1
TU731 other downstream 522030 2483673 ~ 2485988 (+) False grtp1a
TU718 other downstream 550078 2511721 ~ 2513859 (+) False pcid2
TU696 other downstream 562882 2524525 ~ 2527244 (+) True G474
TU717 other downstream 633288 2594931 ~ 2596302 (+) True G482

Expression Profile