RNA id: XM_043239726.1


Basic Information

Item Value
RNA id XM_043239726.1
length 3204
RNA type mRNA
GC content 0.46
exon number 9
gene id elf2b
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 8472819 ~ 8490055 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTTAGGAAATACATCTTCAATACGTTTGCTTCCATAGCACAGTATGATAATCAATGTTCTTAAAGCAGCAACAAGTTATTGAGACAAATGCGCATGCGTGGACAGGTCAAAGGCAGCAGAGATGAATTCATATGAGGGTGGAGAGTGAAAGCACGTGTCTATGTGACAGAGATGGATTAGTCTCATATGCAGATGTTTCAGGGTGGTGGattgaatctttatgagtaggTGCTGGAGTTTGCCACAGGGGGTCAGGAGAGTGCGGGGCATGAGTCATGACGTCTGTGGTGCTTGTAGACAGTGGAGGAGCGGTGGTGGAGTATGTCACAACAGTGGACGACCATTTAACGGAGGAGGGTGTGTACGAGGTTGAGGGAGAGATAGAAGGAGAGGTGGAAGGAGAGGTGGAGTACCCCGCGGTGATCGTGGAGCCTGTGCCCAGCGCCCGGTTAGAGCAGGGCTTCGCTGCTCAGGTGCTGGTGTACGATGACGAGACCTACCTGATGCAGGGAGTTGCTGAGGAGCAGGAGGTGGAGACCGAAGTGCTGGAGACAGTGGAAGCATCAGTTCATGGCTCTGTACAATGCTCTGACAAAACCATTGAGGCTGCTGAAGCTCTTCTACACATGGATTCTCCCTCCAGCTTGCGTGGAGACCGGAGCCCAGAAGTATTTGTGCCTCCATGTGTCAACACTTCAGAGTTCCTGCATGCTGCCATGCGACCAGATGTGCTGACAGAGACCGTGGTGGAGGTCAGCACAGAGGACTCAGAACCCATGGAGGTGGTTACTGTTCTTCAGGAACCGGAGATGCTGGAGACGGAACCAaccaaaagaagaaaatgtgagaACATGAACATTAGCAAAGCTGGGCGGAAACCCAAACCCCATCACATTTCAAATGGATCTCCAGACCTGGGCATCAAGAAGAAATCTAGAGAAGGAAAAGGAAGTACATACCTGTGGGAGTTCCTCTTGGACCTGCTGCAGGATAAGAACACCTGTCCAAGATACATTAAGTGGACACAGAGGGAGAAGGGCATCTTCAAACTGGTGGACTCCAAAGCTGTGTCAAAACTGTGGggcaaacacaaaaacaaaccagacatGAACTATGAAACCATGGGCAGAGCCCTCAGgtaTTACTATCAGAGAGGCATATTGGCTAAAGTAGAGGGTCAGAGGTTGGTGTATCAGTTTAAGGAAATGCCTAAAGACATTGTCGTCATCGATGACGATAAGTGCGATCCTGGGGAAGAAATAATTGGAGAGAAGACCTATGAGCGTGTTCCTCCCTCATCTGACACTCTATTGGCAACTGACCTCTCCAAAACCCCCGCCATCTTGAGAGGGGCCGGTAGGACTGTGGTTCATGCAGGTTCCCCAAAACCTAAAGCTGCGCTTACTGCAACTCCTGTTCAACGCATTGTAACGGTCTCTGCGTCAACAGATCCATCCCATGCCACCATTATCCCCAATGCCAATGCACCCAGGACTGTGCGGGTTGCTATGCAAGTGCCGGTCGTAATGACCAACTCCTTGGGGCAGAAGATCTCAACAGTGGCCATGCAGTCAGCGAACTCTTCACTCTTCACTACAGCGCCCACCAACACCGGCTCAGCGGCTGGTGCGAACGCACCCAAAGTTCTAATCCAGACCATGCCAACGATGGTTCCCGCCACGGCCGAGAACGGTGACAAGATCACGGTCCAGCTCGCCAAGATAATTACCATCCCCGCAACCCAGCTCACGCAGTGTCAGCTACAGGCCAAACCGGGCACCCCAACGGGCATCAACCTGATGGGCGCCCCCCTCGCCGTCCGAGCCCTTGCCCCCGTGTCTGTGGCGCCCGGGGCGCAGGTGGTCCGGTTGGCAGTCCCAGCCCAGCAGAGTCCAGCTCAGGCGAAGACGCAGTTCCCCGTTTCAATCCAGACGCAAACTCAAGTCCCGATCTCTGTTCAGACGGCGTCCACTCCAGTTCAGATCCATATTCAACAGAGCCAGCTTTGTCCAAAAGCAAAAAGCGCAGAGTCAAAACCCGACAGCACTTCAGCAGAACAGCCAGAGCAGGACAATCCCACACAGGAAGCAGCAGCGGTGGTGCTAGAGGAAGCTTCAAATCCACAGTGTGAAGCAGAGAGCTGAAGAGTGATGCCTTTAGTCAGTCAtgaactataataaataaacttatatTCCCCAGATATTATTCAATATCACATTCTGGGAGTACAAACTGGAGATTTGTTAACTTGTACAGTTTCGGATTCGGATTGTGGTttcattttatatgttaaaaaacagaaaaagacaaaacaaaacaggcaAAGACCACAATTCTTACATCATGTGGATTAAATCTGGATGTCCGTCATTTCATTTGTTGTTAAAAGGGACCAATGTAAAGGACActacagttattattttttttaatctaactTTGACACTAATAACAGCTAAGCAGAACACTAAGGAGTGAGTAGTTGAAGTAGTCGAGTATGTGAAACTTTGAGGGAGGATACATTCAACTTTTTATAACTTgtataaagagttttttttttcttgaacatTTAAATTGCAAGGCAAAACCAGCAGTTTCTTTTGACGATCACTGTGAGCGCACGCTTCTGCCCGTGTTTCACAGGAACGTGTCGATTCTTCCTCCGCTACTAAAGGAAGAAATGGActttgtatatattaattatacagtttacTGAATTTATAAACAATGCAGCCTTAGAACAGTTTTGTTTGTCGTTATTCTTTTAAGTCAAGCTTATTAAGCTTTTGTGTTAttctcatgtttgtttgttttgtttttttttttcttccctcacGCATTTTACCAGTACAGTATTATTGGCAAACAAACtgcaaatcatttttgcattCTCATCATAATCAGCCAGATTAAAAAGACCGTTCTGATTAGGTGTAAGTAAATCTGGATCCAAATCCTGGAAAGATGCCAATCCCCAGGCCCCAAAAAGGTCAATCATTAGCATGCATCTTGACTTCAGATACATTTGTTGCgcatttttcttttggttttattaGTCCTTTAAAGAGGGAGAACGAGATGTTCGTGTTCAGAATAATCTAGTTTGTATATTCAACATTTGAAGTATGCTCTATTTTGTTGTACTCTTGTTTCAAAGTGTACTCAAGTAGATTTTactcaaatacaaaaaatattcctGAATTTGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251726.1 lncRNA downstream 24195 8446548 ~ 8448624 (-) True LOC122351284
TU2701 lncRNA downstream 305432 8138483 ~ 8167387 (-) True G1868
XR_006250489.1 lncRNA downstream 395432 8076701 ~ 8077387 (-) True LOC122341751
TU2691 lncRNA downstream 395489 8075175 ~ 8077330 (-) False LOC122341751
TU2673 lncRNA downstream 488516 7980771 ~ 7984303 (-) True G1845
TU2794 lncRNA upstream 4104 8492403 ~ 8493280 (-) False mgarpb
TU2796 lncRNA upstream 9303 8497602 ~ 8500177 (-) False mgarpb
TU2801 lncRNA upstream 67741 8556040 ~ 8607795 (-) False G1926
TU2919 lncRNA upstream 143165 8631464 ~ 8634397 (-) True G2010
TU2929 lncRNA upstream 181114 8669413 ~ 8670804 (-) True G2016
XM_043247042.1 mRNA downstream 293243 8172337 ~ 8179576 (-) False pcdh18a
XM_043247033.1 mRNA downstream 293244 8172337 ~ 8179575 (-) True pcdh18a
XM_043248886.1 mRNA downstream 654420 7805692 ~ 7818399 (-) False sclt1
XM_043248874.1 mRNA downstream 654420 7805692 ~ 7818399 (-) False sclt1
XM_043248882.1 mRNA downstream 654595 7805692 ~ 7818224 (-) True sclt1
XM_043252454.1 mRNA upstream 3845 8492144 ~ 8500212 (-) False mgarpb
XM_043252378.1 mRNA upstream 3845 8492144 ~ 8500212 (-) True mgarpb
XM_043250010.1 mRNA upstream 77854 8566153 ~ 8598509 (-) False camk2d2
XM_043250040.1 mRNA upstream 77854 8566153 ~ 8598474 (-) False camk2d2
XM_043250024.1 mRNA upstream 77854 8566153 ~ 8598474 (-) True camk2d2
XR_006250550.1 other downstream 1177140 7218986 ~ 7295679 (-) False dmd
XR_006250549.1 other downstream 1177186 7205584 ~ 7295633 (-) False dmd
TU2401 other downstream 1303398 7162323 ~ 7169421 (-) False G1642
XR_006250919.1 other downstream 1345412 7071589 ~ 7127407 (-) False trpc5a
TU2105 other downstream 1931436 6539528 ~ 6541383 (-) False LOC122342514
TU2800 other upstream 115001 8603300 ~ 8607795 (-) True G1926
TU2970 other upstream 290919 8779218 ~ 8782587 (-) False LOC122351550
TU2978 other upstream 306772 8795071 ~ 8798355 (-) False LOC122351550
TU3335 other upstream 1910888 10399187 ~ 10401686 (-) True G2302
TU3397 other upstream 2253623 10741922 ~ 10745896 (-) False LOC122347930

Expression Profile