RNA id: XM_043239977.1


Basic Information

Item Value
RNA id XM_043239977.1
length 1985
RNA type mRNA
GC content 0.51
exon number 11
gene id psen2
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 24895841 ~ 24902227 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTTTCACTCTAGACGCGGGGGAGGAAGTGGCTTTCCGGACACATCAGGAGACGTCGGACAGTCAGGGATCACGATGAACGCTTTGATCTGGGTTTGAGGAGCTTTATGAGAATATGACAGCATGATGAGTAGAAACAGGGACGTATCACACTAATTACAGCTGCGGGGAAACGCGTGTGTTGTCACAGATATTATGCTTCGTTTATAAAGCTCTAGGCATTTGGCTTCTGTCACCTTCTCTTAATGAATACCTCAGACAGCGAAGAGGACTCTTACAACGAGAGGTCCGCTCTGGTCCAGTCCGAAAGCCCAACCATCCCCTCGTACAACCATGATCACGATTTGTCTCTGCCCCAGAAAACGGACACCAAACGGCGGCAGCCAGCCAGTTCAGTTTTGGATGAGCCAGGGCCGGCGGAGCGAGAGCGAGCGTCCACTCCTGacggagaggaagaggagctgACCCTCAAATACGGCGCTAAGCACGTCATCATGCTCTTCATCCCTGTCACGCTCTgcatggtggtggtggtggcaACAATCAAGTCTGTCAGTTTCTACACGGAGAAGACCTCACAGCGGCTcatCTACACTCCGTTCGAAGAGGATCCGAACTCTGTCGGTCAGAGGCTCTTGAATTCGCTCCTCAACACCATCGTCATGATCAGCGTGATTGTGGTCATGACCATAATACTGGTGGTGCTTTATAAGTATCGCTGCTATAAAttcaTTCACGGCTGGCTGATTCTGTCGTCACTGATGTTGCTCTTTTGGTTCAGCTTCATGTATCTGGGTGAGGTGTTCAAGACGTATAACGTGGCTATGGACTACCCAACGTTAGTGATGATCATCTGGAACTTCGGCGTGGTGGGAATGATCTGCATCCACTGGAAAGGGCCTCTGCGGCTGCAGCAGGCTTACCTCATTGTTATCAGCGCCCTCATGGCCCTCATCTTCATCAAATACCTGCCCGAATGGTCGGCATGGGTCATACTAGGAGCCATCTCCATATACGATCTGATAGCGGTGCTTTGTCCGAAAGGGCCTTTGAGGATGCTGGTGGAGACGGCGCAAGAAAGAAACGAACCAATTTTCCCTGCACTCATATATTCatCTGCTATGGTTTGGATGGTCGGCATGGCTGACTCTAGTCATCCAGATTCAGCGGATGAAAGGCAGCGGAATGAGGGCGGAGCCCGGGCGCAGGAAGGGGTGGAGTCAGAAGACGATGCGGCCCAGGGAGGGAGGCGGCGGGATTCAGCAGAAGAGGACCTCGAGGAAGACCGAGGGGTGAAGCTGGGTCTCGGTGATTTCATCTTCTACAGTGTCCTGGTGGGGAAGGCGGCCGCTACCGGAGGAGACTGGAACACCACACTGGCCTGTTTCGTGGCCATCCTCATTGGACTGTGCCTGACGCTTCTCCTTCTGGCCATTTTCAAGAAGGCTCTGCCGGCTCTGCCCATCTCCATCACCTTCGGCCTGGTCTTCTACTTCTCCACAGACAATCTGGTACGGCCCTTCATGGACAGCCTGGCAGCCCACCAGTACTACATCTGACAGAAACCCACAGACACGTGAAGGACTTTATCAAAACAGCCGTTTCGTTTCAAGAGATTCAAACGTTTTTAGTTCTTATCTGAGCAGGGTTCTGATCTTGCTGGGACTCTCCAGGTGAGTGAACGAAGGTGTGAAATGTATCGAAACAAGCAAACCGATTTCAGTTCTGAGCTggcattttgatttttttttattaagaggCCGCGCATCAGCTCTTTAGGATATACAGtagttttactattttttgtACTTACTGAGAAGGCGTCTCGAGTGTTAAAGAAGGGTCTTCTTGACATAATGACTGATAAAGTGAAGAACAGAGACTCGGTCCTCAGACAGAAGCCTGTATATGTGGCCTACGTGCAGCAGTGTGAGTGCTGTAGGCTTGCCAGTGGTTACAGCATAATAAACTAATCACACAAATAGA

Function

GO:

id name namespace
GO:0042987 amyloid precursor protein catabolic process biological_process
GO:0007219 Notch signaling pathway biological_process
GO:0007220 Notch receptor processing biological_process
GO:0050435 amyloid-beta metabolic process biological_process
GO:0006509 membrane protein ectodomain proteolysis biological_process
GO:0061053 somite development biological_process
GO:0006816 calcium ion transport biological_process
GO:0030318 melanocyte differentiation biological_process
GO:0007420 brain development biological_process
GO:0022008 neurogenesis biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0005765 lysosomal membrane cellular_component
GO:0035253 ciliary rootlet cellular_component
GO:0045121 membrane raft cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0030424 axon cellular_component
GO:0030426 growth cone cellular_component
GO:0043025 neuronal cell body cellular_component
GO:0031594 neuromuscular junction cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0005634 nucleus cellular_component
GO:0005938 cell cortex cellular_component
GO:0009986 cell surface cellular_component
GO:0030018 Z disc cellular_component
GO:0043198 dendritic shaft cellular_component
GO:0016324 apical plasma membrane cellular_component
GO:0004190 aspartic-type endopeptidase activity molecular_function

KEGG:

id description
K04522 PSEN2, PS2; presenilin 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8826 lncRNA downstream 22300 24872629 ~ 24873541 (-) True G6058
TU8818 lncRNA downstream 26836 24868441 ~ 24869005 (-) False G6056
TU8811 lncRNA downstream 32467 24844701 ~ 24863374 (-) True LOC122345669
TU8810 lncRNA downstream 32467 24860630 ~ 24863374 (-) False LOC122345669
XR_006251020.1 lncRNA downstream 32754 24841761 ~ 24863087 (-) False LOC122345669
TU8832 lncRNA upstream 9074 24911141 ~ 24913468 (-) True G6061
TU8864 lncRNA upstream 84917 24986984 ~ 25204897 (-) True G6077
TU8869 lncRNA upstream 95585 24997652 ~ 24998787 (-) True G6081
TU8870 lncRNA upstream 105841 25007908 ~ 25009573 (-) True G6082
TU8883 lncRNA upstream 177929 25079996 ~ 25081855 (-) True G6091
XM_043239933.1 mRNA downstream 4374 24883400 ~ 24891467 (-) True spast
XM_043245367.1 mRNA downstream 83671 24806784 ~ 24812170 (-) True gprin3b
XM_043229413.1 mRNA downstream 93416 24785279 ~ 24802425 (-) True zgc:154142
XM_043229246.1 mRNA downstream 114946 24743634 ~ 24780895 (-) False fam13a
XM_043248818.1 mRNA upstream 21129 24923196 ~ 24951265 (-) False jag1a
XM_043248810.1 mRNA upstream 21129 24923196 ~ 24951265 (-) False jag1a
XM_043248800.1 mRNA upstream 21129 24923196 ~ 24951265 (-) True jag1a
XM_043225513.1 mRNA upstream 74973 24977040 ~ 24984030 (-) True esf1
XM_043225434.1 mRNA upstream 74973 24977040 ~ 24984012 (-) False esf1
TU8816 other downstream 25376 24868441 ~ 24870465 (-) True G6056
TU8136 other downstream 723779 24167385 ~ 24172062 (-) False G5624
TU8851 other upstream 70424 24972491 ~ 24973371 (-) True G6073
TU8856 other upstream 86709 24988776 ~ 24993345 (-) True G6074
TU8865 other upstream 92416 24994483 ~ 24995820 (-) True G6078
TU8873 other upstream 124596 25026663 ~ 25028129 (-) False LOC122349000
TU8871 other upstream 132797 25034864 ~ 25062531 (-) False LOC122349000

Expression Profile