RNA id: XM_043240073.1


Basic Information

Item Value
RNA id XM_043240073.1
length 5303
RNA type mRNA
GC content 0.49
exon number 23
gene id tbc1d1
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 11336559 ~ 11382357 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAAACGTCAGACGAGACTTCCTCAATCTCACGCGCAGCGAACACCCCTCACTCCTCTCCGTGCGCCGCCGTCGCGTTCCCGCTGTTTATGGTGAACGACAGAACGACAGATACTCTGATTAATCGACTATTTTGTAGCAAGAGCAGCCTGAAAAATCAATTCTTGATGGGACATTATAATCTGCATCGTCAACATTTGAGGGAGCCGTTATTCAAACACTTCCTCAAGGCGGTGCGTAGTGAGTAAAGGTTACACCTAGTTCCTCAATTTATGACTATAGGAGAATGGAGGGCATTTGTTTCGAGGTCAAACCCAGGGATGACCCAGTCAAAGCTCACCCTCACTGTGCCCTTGCGCAAACGCTTCCTGGATCAGAGGgtaagaggaagaaagaagaagaggacGAGGAGATTCAGTACAGGCTGACTCTGGTTGGGTCTCTGGCCATACATCCACAGACCACCATGGCAATGCTTCCCTGGGTGGTGGCTGAAATACGGAGGCCCCGGCTGGTGGAGAAGAACAGAAACCTTCAATTCAATGGTGCTCACTCTCCAGAGGTTCGAGATCAGCCTGTAGTACTGCAGATTTCAGCCAATTCAGTGTGCTGCATTTTGGACACGGCTGGCCCGGGGAAGCTGTGGGACCCATTGCAACATATGGTTCTGTTTGATCACAGGCCTCATCGTATCACCAAACTCATTCACAACAGCCAAGAGCCCAGCTATTTTGGCTGTCTGCTCAGAGAGGAGAAGAAAGCAGCCTGCTACGTATTCCGCTGCCAGGACCAGACGAAGGTTCCAGAGATCATCAGCACTCTCCGGCAGGCCGGCAAAAGTTCTGCCCGACAAGAAGACACTCCCCCATCTCTGCCTAGCAATGGTCAGGCAGATGCCTCCTGCTCCACAGTAACGACGGCTGATGCAGCAACAGCCTTTGCCAAGAAGTTTGAGGTGTTGTTCTGTGGGCGAGTGGTGGTGGCCCATAAGAAAGCACCCCCTGCACTAATAGATGAGTGTATCGAGAAGTTTGGACGTGTCAGCGTCACAGGGTCACTTGCAGCGGGCATCAGGCGGGCGTTCTCACTCAATCAGATGGTGAATGGAACAAACGAGGGGGCAGATGGAGGAGGAAAGCGAcctctgttttttaaaagagatcAGAGTTTTCCGTTTCTGCAGGCACTGGATGAGAACGGCCTCTCACCGGAGCTCCAGCGACGGGCAGCAGACGGAGCCACCGGGGTCCAACCCACTAGCTTACAGGAGAACAGAACCATGCTGTTCACGATCGGCCGCTCTCAGATATTTCTTGTGAGTCCTGACACTAAGAAAGTGGCCATCGAGAAGAGCTTCAGAGAGATTTCCTTCTGTTCCCAGGGTATTCGTCATGTGGACCACTTTGGCTTCATATGCAGGGAATCGGTGGAATGTGGAGGCTGCCAGTTTGTTTGCTATGTTTTCCAGTGTGCTAACGAAGCTCTGgtGGATGAGATCATGTTGACTTTGAAACAGGCGTTCTCTGTGGCCGCCCTCCAGCAGAACAGTAGGACCCAGAGTCAGCAGTGCGACAGTTGTCCCCTACAGCAGCTGCACAAACTGTGTGACAGAATAGAGGGTCTTCACCCATCCAAAGCTAAGCTGGAACTGCAGAAGCATTTGGCAGGTCTGGATAATCAGGAGCAGGCAGCTGTGTTTGAGAGCACCATGAAAGCCAGGCCTAAGTCAGATCAGGAAGAAAATGAGTTGATTGTGTCATGTTTGAGACGACTGTACGAGGAGAGgcaaaagacacacacacacaacggaCAAACAAAAAAGACTTCTCAGGAAGTGGCTGTGAATGCTGAAGGCACCGTTAGTTCCAGTCGAGTGCGTTTGGAGGAGCTCAAGACTAGAGCGAAAAGATCCCTCACTGAATCATTGGAGGGGATCTGGAAGGGAAGCAGTAAGTCCAAATCCCAGAGAGAGAACAGTGAAGGAGAGAGCAACTCCTCTAGCTCCACCACACTGAACAGCACAAATCAGGAAACATCATTGGAGGAGCCCCTCTGCTCTTTCCTTCCCTCCAGCCCGCTCCGCTCCCACAATTCCACAGGGGATCTGAAGCATCTAGAAGGCTCAGGCGGAGGTCAGGAGGGTCCTGAGAGCCCGCCTCAGGGCTTTAGGAGACGTGCAAGCACAATTAGTCACTCTCCCATGCTGTCGTCTTCTGAGCCCAGTCTTCCCCCTCTACAACCTACTGCCGCCACCAAGCCCAAACTGGTCCGACACTACTCTGTCAGCACAGATTCCCCACATCAGAGCAATCCTTCTTCCCCTCCGGCCTCTTCCTCTCCTGTGTGTCAGCGGCCGTTGAGGCCTCGTTCATTTGCTCTTGATCATTCCACTCGGCCCCTCAAGCGGAGTGACGTAGCAGCCCTGTCTAGTCCTGGAGCAGTGTGTGTTGTTGGGGATGACAGTCCATTACGTAACCGGAGACACTCCTGGAGACAACAGATCTTCTTAAGAGTCGCCACACCACAGAAGGGCTCAGACTCCAAAGAATCCACCTTAGAGGTTAGCAACAGACTGGCTCTGGGAGGTGGAGTGGGGGGCGGGGACAGCGTCCTGGGGGCGGTgccagaggagaggagaaagaggagtGGGGCGGAGCTAAGAGCATTATGGAGAAAAGCAATTCTTCAACAAATTCTCCTGCTgcggatggagagagagaatcaGAAACTACAAGCCTCAGAGAGTGATCTGCAGTGTAGACGACTGAAGCTGGACTATGAAGAGATCACACCATGTCTGAAAGATGTCACGCTGGTCTGGGAGAGAATGCTCAGCACCACtgggaggtcaaaggtcagattTGACACTGTGGAGATCCACAAAGCTGTGGGAcaaggtgtcCCTCATCAGCATCGAGGAGAGATTTGGAAGCTTCTATCAGAACAGTATTTGCTGAGGAAGGAGGTGCCCAGCACCAAACCTCCTAACAACGACACTCCTTACAAAGAGCTTCTGAAGCAGCTCACATCCCAACAGCATGCCATCCTTATAGACTTGGGACGTACTTTTCCCACTCATCCGTATTTCAGTGCTCAGCTGGGTGCTGGCCAGCTGTCTCTTTATAATCTACTGAAGGCATATTCTCTGCTGGACCCAGAGGTGGGCTACTGCCAGGGCTTGAGTTTTGTGGCCGGCGTGTTGCTGCTCCATATGAGTGAGGAGGACGCATTCCACATGCTCAAATTCCTTATGTACGACATGGGGCTGCGGAAACAGTACAGGCCTGATATGATCATACTGCAGATTCAGATGTATCAGCTGTCTCGTCTGCTTCATGACTATCACAGGGAGTTGTACACCCATCTGGAACAGTACGAGATCGGCCCCAGTCTCTACGCCGCTCCCTGGTTCCTCACCGCCTTCGCGTCACACTTCCCTCTTGGATTTGTGGCTCGAGTGTTCGACATGCTGTTCCTTCAGGGATCGGAGGTCATCTTCAAGGTGGCTTTGAGTCTGCTCGGTAGCCATAAGCCTCTGATTCTGCAGCACGACAATCTTGAGTCAATTGTTGAGTTCATCAAAACAACCTTACCCAATCTGGGCCTTGTGCAAATggaaaaaacaatcaatcagGTGTCTGAGATGGATATCAGTAAGCAGCTGCAGGCCTATGAGGTGGAATATCATGTTCTTCAGGACGAGCTCTTGGATGGTCCCTCCactctcagccaatcacagcgcgTGGCCCAGTTGGAGAAGACCAATGGAAGCCTCCGACAGCAAAACTTAGACCTCCTAGAGGAGCTTCAGGTTGCCCACGCTAAGATCAGATGGCTGGAGACTCGTGTTGATGGTCTGGCGAGTCGAGAGGCTGAGCTACAGTCGGAGGTAAAGACTCTCCAGCAGGAACGGACAGAGCTGCAGCAGACTGTATCCAAACTCAGAGATCTCCTCAGCAGCCTGGATATAAACAGCTCCATCCCTGACCAAGAAAACTTCACCAACACAAACAACAACCTATGACTCTGCCAATTAGGATACACAGTCTAGCTCCTCCTTTAAACATCACATCTATTGGAAGGTGACGCCTTCTTATTGGAGGTGGACAGGTAGGTTTTCAGAGCACTGAAGATCCTTCACCTTAGGTCTCTTTGAAGACTCTTTTAGAGTATCTCGCCGGAactgattaaaacattaaacagctCAGAAAAATCACTGAGATTTCCTTCCTTTCTGGTTCTTATGGCATTTGTGACTGACGTTTACTTTCTGAATcgagaaattaatttttaatccaAACTCCTTTTTTACACTCCCTGCTGTTGTTTTGGCGTTGCTAAAATGGCATTGACCCCAGCAAAGCCTCTTAATGTAGATTTGATTGGCGTTTAGGCATCAGATTGACAGTTCCCCAGTAAGCACTGAACAGCCCACTGAAAGGCTATGGATAAATGCACTCTTGTTGTGCAGCGTATCGTTTGCACCCTGTTCTTACtttgtgtgaatgtttgtgtgtgagcatgtatgtatgtatgtggaAATCTACCGTTGTATTCCAGTgcaatataaactaaaaaaaaagacaacccTCCAGAACACTGTAAACCTGCACAATCTTCTGTTCTAACAGAAATCGACGAGGAGCTCagatctttttttgtgctttcaaTCTGAGACTCAGACCGAATGCTGCTGATTTACGCAGAAATCACTCATTCACACTTTGcagaaataacattaaaactttTCAAACAATAGTCAGTCTTTTTCATTGttacacaaaaaatgcaaaatgcgaTATAAGCACAGTATCCACCAGTTTGTTCATTTGGATTTTGAGGTGTCCACTAATGGCATTTTAGCTACTTTGTTTCACTGCTGTTGATATGGTACTCAATAAACCAAAGATCGGATTACATTTCAGGACTTCTGCTGTGACAGACCACACGTCGGGTGcgtagatgtgtgtgtttgtctgaacaCACTGTGCGCGAGTGTCTGTTTTAAATGCGCTTTCAAGAGTTGTCACCTCACCTCTGTATCTGAGTGTGAAATGTTTTGACAGATGGAAATAAAGGGGTGTGTGcgaataagaaagaaaacagatcaTCTTGCATCATTTGCGTGACAATATGTCCTTAACCTTTGACCTCAGACGCGTTTCTGGAGAATTCCATTTGTGTTTTCCAGTGTTTGAAAAAAACAgggacatcattaaaacatcatTCTTGATgaagtgctttatttttattggtttttatgTAGAGTGTTCTTATTATATggattaaaaacagtttaaatgaa

Function

GO:      GO:0005097,GO:0032313

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3690 lncRNA downstream 43546 11281523 ~ 11293013 (-) False klhl5
TU3681 lncRNA downstream 137751 11198578 ~ 11198808 (-) True G2532
XR_006251254.1 lncRNA downstream 329655 11004773 ~ 11006904 (-) True LOC122347981
TU3488 lncRNA downstream 337474 10998334 ~ 10999085 (-) True G2391
TU3476 lncRNA downstream 470511 10861565 ~ 10866048 (-) True G2381
TU3713 lncRNA upstream 13378 11395734 ~ 11396531 (-) False LOC122343263
TU3711 lncRNA upstream 25209 11407565 ~ 11410780 (-) False zgc:195282
TU3709 lncRNA upstream 25252 11407608 ~ 11410780 (-) False zgc:195282
TU3710 lncRNA upstream 25252 11407608 ~ 11410734 (-) False zgc:195282
TU3770 lncRNA upstream 150964 11533320 ~ 11536547 (-) False ptprdb
XM_043241280.1 mRNA downstream 12221 11310593 ~ 11324338 (-) True klf3
XM_043247704.1 mRNA downstream 26437 11302481 ~ 11310122 (-) True fam114a1
XM_043247713.1 mRNA downstream 26438 11302481 ~ 11310121 (-) False fam114a1
XM_043240917.1 mRNA downstream 43848 11242031 ~ 11292711 (-) False klhl5
XM_043248548.1 mRNA upstream 1435 11383791 ~ 11393826 (-) True pgm2
XM_043237659.1 mRNA upstream 13378 11395734 ~ 11396576 (-) True LOC122343263
XM_043244772.1 mRNA upstream 25209 11407565 ~ 11411713 (-) True zgc:195282
XM_043236864.1 mRNA upstream 107596 11489952 ~ 11492033 (-) True phox2ba
XM_043235259.1 mRNA upstream 131795 11514151 ~ 11580717 (-) True ptprdb
TU3498 other downstream 282618 11053154 ~ 11053941 (-) True G2401
TU3478 other downstream 355193 10953875 ~ 10981366 (-) True G2382
XR_006251247.1 other downstream 522484 10810310 ~ 10814075 (-) False LOC122347618
TU3398 other downstream 576068 10757571 ~ 10760491 (-) False LOC122347930
TU3397 other downstream 590663 10741922 ~ 10745896 (-) False LOC122347930
unassigned_transcript_5 other upstream 115929 11498285 ~ 11498358 (-) True trnai-aau
TU3761 other upstream 128083 11510439 ~ 11512833 (-) True G2584
XR_006250806.1 other upstream 959379 12341735 ~ 12365995 (-) False gria2a
XR_006250810.1 other upstream 961093 12343449 ~ 12365995 (-) False gria2a
XR_006251305.1 other upstream 1521843 12904199 ~ 12926482 (-) False prom1b

Expression Profile