RNA id: XM_043240287.1


Basic Information

Item Value
RNA id XM_043240287.1
length 3366
RNA type mRNA
GC content 0.48
exon number 20
gene id sh3d19
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 13790575 ~ 13808268 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGCAAGTAGGAAGATCTCCACGAGCAGGTCTGGGCAGCCCTGCTGAACGTGAAAGGAGGGAATGAACTCAGTTTTAGAGAGCAGTGGCTGCTGGTGTGGTGCAGAGGCCGCGGGGGGAAAAAAGGCAAAGCTACCAGCTGTCAGAGAGATTGCTCCAGGTGGATCTTAATGCCATCAAAGGTGAACAGATGATTGTCATTCTCAGAAGAAAAAGGACAGCATTTGTCAAGCGCATTATCttttttTGTATAGAGAGTGAGCCAGCCCTCCTGACTGTTATCATCTGTCTGCTCACCAGACTTACAAGCCCTCTCCTTCAACAAGACCCCAGCCTGGCAGGtcaaggACCCCTTTCTTCAatcaaagcagcttttaaaaGAACTTCTGCAAGAGCTCACTCGCAACCGGACTGCTCCAGAGAAAGAAGGCGTCCAGAGATAACCATCCTATCGGCAGAGCCGCTAACAGCCACTTCTTGGCATTCAGGGGTGTCCAGACAAATACCATCCACAGCTTTCACCACACAACCAATCTGGAGTGAGAGTGTTCTGACCTCTGCTCAGCTCCCACCATCCTATGAGCAGGTGATCAAGGAGAAGACTAAAGAGCAGGTTACCACACCTTTACCATCTCCACGACGCTCGCACACAACTATTGCCACACAGACTGACTCACTAGAGGAGAATGTGACGCATCCTGATTCCTGCACACTCCAAAATCCCAGTGGAGTTTCAGAGAAGCAGCCAAAAAAACCACCTCGGCCATCATTGCCCTGCAAACCAGATCAAAAAAACAGATCCTCTACATGCACTTCCAACTCTCAGCCCAATGTCGATGTAGTCTCAATCACACGTCCAGTGCCTCAACCACGTTCTAAAACAAATCCCTTGAGCTCATCCAACCAGGTCAATGTGCAACCTCTGATACCACTGCAAGACAGCTGGGAAGGTTGTCCTGTAACACTTGTGGAGACTTCTGATGCCCATTCAGGCAAGTATCTGCAGGAACTCTTAGATGTCTTCAGCTCTGATCCTCAAAGTGATCTGAGCGACAGTGTCAGCATCCAGGGAGAGCAGACGAGGCAAAGTGAAAACATGACCTCCTTTCACAGCGACCGCAACATCCTTTCAAAAATACAGGCCTTTGAAAGTCAGTCGAGCAAAGAGAACGATGAATCTTCTGTACCTTTTCCCCGTCCTCGTAAGGTTTTTGCCAAACCACCTGTGCTGGCACCAAAACCCTCCATTGCCCCACGACCGTCTGTAAAAAAGCCCAAAGAAGAGCAGGTTTCAGAATTTGTGAGTCACTTATACGAAGAGGTTGACATGCCACCCATGCCAGCTCCAAGACCTCAGCTTCTCAAAAAACCATCTTTAGACTTTAGAAATGTTGACTCTCAGCCTTCCTTCAGGACAGCCCTTATTCCACCGTCACGACCTTCATTGGTCAGAGGTAAGAATGTAAGTTCCCCGGATGAGGAAGAAGTGGCATTGAAAGGACCTCCCACCCCACTCAAGCCAAGCAAAGACCTGCTGAACCTCAATAACCATAATTCCACTGCACTTCTGTCTAACATCACATCCACAGCGAACATGCTTGGCAATGACTATATGGATGCTCCCCTTAATCATTCTCCCACTAAACCTTCCCGTCAAGGGGGATTCACCTACATGGGGCTACAGGGGGTGACTAAGAGACCCACAGTCATAAGAGTTCCCAGTAAAACTGACAAAAACCCTGAAGAGGCAGCAGATGTTCCTCCACCTTTACCTGTGCAGAAAGCTGTGGGCGGCCCACCTACACCTGCTAAACCTTCTCGTGAAGTGAGACCTTATTCAGCTATCTCAACAAACAACAGCCGTGCAACAAGCAACCAAGCAGACTCCTTCAGTTTCTCATCTGATATGTCTCTTCCGCCACGGCCCAGTGGAGGAAAGGTTCTACCTCCACGACCGCCACCAGCTAAAGCAGGCCCAGGAAGACCTCCTCCTCCACGGAAAGATGGCTCCCAACGTCGGCCCTCAGATCCAGGAGTTTCACAAATAGTGCcatcaaaacaacagcaacctCAATGGCAGCAGCAAAACCGTAGAGCTTCAAAAAAAGGACCTGCCCTACCGCCGAGACCCAACCCTGGACATCGTCTTTACAATAAATACACCCTTGAGATCCCCCACGGTGTTGCTGAGTATGACTACAATGGCACTAACACTGGGGAGCTCTCTTTTCAGAAAAATGAAGTTCTCGTCTTGCTTGAGGAATTGGACAATAAAACCTTTGTATGTCAAGTGGGAAACGCTAAGGGCACCgtgcagaaaacacacatgaagATTATTACACCCTTAATAAGTATACCCAGAAATCCAGTACTTCAGaaaaacagTTCTTTCAGTGGTATGGTGGAAAATACTGGATCTTCACAAGTGCAGGCCCTGTATGACTTCACTCCAGAGGGGCCTGGAGAGCTGATGTTGAAGGCTGGTGATGTGGTGTCTAATGTAGAACAGCTGGACAGTGAGTGGTACATGGGTACATGCAGAAACATCACTGGATTCTTCCCCATTAACTATGTCAAGACACTGGTGACAGGTgtgcaaaaatattctttacacaCTGAGGTTGATGGTGAACATGTTGGTGACGTCTCTACCGTTATCAATAATCTTTTTAAGCCTGCTACATCTGCGCCACCACCCAGAAATGAATGGAAAACCAAACCATTTCCTGATCCTGTCAGAGGCCCAAGGTGTGTTGCGAGGTTCGACTTTGAGGGAGAGCAGGGCGATGAGCTCTCGTTCTCTGAAGGTGATGTGATTCGGCTCAAAGAATATGTGGGAGAGGAGTGGGCTCGTGGGGAAGTCGGTGGTCACGCTGGTATTTTCCCTCTCAACTTTGTGGAAGTGCTTGAGGATCTTCCCTCAATGCAAAAATCTGTTCCGAATAAGATTGCACTACCTGGAATGGCCGGATCACCTAACACACGAATGTCTTACACAGCCACTGAGGTTGAACGTAATGGTGAAGAGTGGGCTGTGGCACTGTATGACTTCACAGCAGAGACGGACGAGGATCTGCCCTTCCAGCAGGGAGACAGGGTCCTGGTCACCGCTCACATAGACGATGAATGGTGGAGCGGACGGGTCAATGGCAGAGAAGGCTTCTTCCCCAAAGCCTTCGTAGAGACTCTTCCAGGAGGAAGAAAGTGGTAGTGGGAGGAAGAAGCAGGAGGACTATCAGAAGCAGTGTTTTTCTtctaattcattttcttttttattgtgtttgtctaaaatatttataaatgtgaagTCATTTGTTGATATTTCAAATCTATCGTATcctaaaaatatacattcatgAACTGCTAT

Function

GO: NA

KEGG:

id description
K23714 SH3D19; SH3 domain-containing protein 19

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251040.1 lncRNA downstream 1657 13787431 ~ 13788918 (-) True LOC122345850
TU4612 lncRNA downstream 3926 13783854 ~ 13786649 (-) True G3211
TU4573 lncRNA downstream 271584 13518038 ~ 13518991 (-) True G3192
TU4572 lncRNA downstream 271584 13518453 ~ 13518991 (-) False G3192
TU4440 lncRNA downstream 398108 13392005 ~ 13392467 (-) True G3096
TU4625 lncRNA upstream 17226 13825494 ~ 13878315 (-) True G3222
TU4638 lncRNA upstream 116007 13924275 ~ 13927061 (-) True G3230
TU4640 lncRNA upstream 153440 13961708 ~ 13968780 (-) True G3232
XR_006251753.1 lncRNA upstream 441337 14249605 ~ 14267785 (-) True LOC122351408
TU4679 lncRNA upstream 604499 14412767 ~ 14412975 (-) True G3266
XM_043237014.1 mRNA downstream 8837 13588381 ~ 13781738 (-) True lrba
XM_043250221.1 mRNA downstream 339412 13434217 ~ 13451163 (-) True lcorl
XM_043250215.1 mRNA downstream 339412 13435897 ~ 13451163 (-) False lcorl
XM_043250226.1 mRNA downstream 339412 13441286 ~ 13451163 (-) False lcorl
XM_043238277.1 mRNA downstream 368337 13398841 ~ 13422238 (-) True fam184b
XM_043247248.1 mRNA upstream 21195 13829463 ~ 13842664 (-) True LOC122350606
XM_043247300.1 mRNA upstream 73625 13881893 ~ 13895284 (-) True LOC122350629
XM_043247260.1 mRNA upstream 305065 14113333 ~ 14114156 (-) True LOC122350613
XM_043247085.1 mRNA upstream 461985 14270253 ~ 14401149 (-) False fbxw7
XM_043247093.1 mRNA upstream 461985 14270253 ~ 14401149 (-) True fbxw7
unassigned_transcript_100 other downstream 401250 13389253 ~ 13389325 (-) True trnar-ucg_69
unassigned_transcript_99 other downstream 402069 13388434 ~ 13388506 (-) True trnar-ucg_68
TU4412 other downstream 498852 13291296 ~ 13291723 (-) True G3072
unassigned_transcript_98 other downstream 500235 13290268 ~ 13290340 (-) True trnar-ucg_67
unassigned_transcript_97 other downstream 500552 13289951 ~ 13290023 (-) True trnar-ucg_66
TU4632 other upstream 33274 13841542 ~ 13842643 (-) False LOC122350606
TU4627 other upstream 74010 13882278 ~ 13884236 (-) False LOC122350629
TU5035 other upstream 938561 14746829 ~ 14748975 (-) True G3491
TU5081 other upstream 1116817 14925085 ~ 14925363 (-) True G3522
TU5072 other upstream 1212374 15020642 ~ 15029620 (-) True G3515

Expression Profile