RNA id: XM_043240889.1


Basic Information

Item Value
RNA id XM_043240889.1
length 2858
RNA type mRNA
GC content 0.44
exon number 12
gene id pdcd4a
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 14816866 ~ 14828026 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCTGTCTCAAGTTGAAAACACTGTCCATGTTATTGCTCTCTCTCTGCAACGTGCGTGCTGCACtgctaatgcaaaatatatttttgtagacCTTTTTGACTTAAATAATTACGCAAGATATTTTTAACGGATCTTCCTATTTACCTCACTCAAGGACTGTTTACATTACCAGCAATCCCACTGCTAGATTTTAAGTGACAATCGAGCCTTCAGTTTAAGGCTTAGGTGGACGGTAAACAAGCGTATAATGGCGACTGAGATTGAAGCATGGACCACTGGCCCTCAAAACGATGTTGAGCAACCGCAGGGTGAGGAGGACGGCAGCGAGGATCTGAATGAGTTGGAGGTGAACGGGAACTGGACCCCTCAGGAGAAGGCCCTGCACGAGGCCAGACTGAAAGCTAAGGCTAAGCGGCGACTGCGCAAGTCATCGTCCCGGGATTCCAACCGGGAATCGTTCTCTGATACGGTTTCAGGAGAGCTTTCTACCGATCCACACAGTCCCAAGggcaaaaatgctgtaaacgaCAGAAAGTCACGGACTGGAAAAGGTCGGGGACTTCCCAAAAAAGGTGGAGCGGGTGGTAAAGGAGTGTGGGGGGCAGCAGGTATGGTCTATGAGGTGGAGGAACCTGATGCCAAGGACCCCAACTATGACGAATCTTCACAAGGAGACACAGTATATGCCACAGTGGTACCAGAGCTGGACGAGAGAGAACTCGAGAAGACCATCAACCCCATTGTGCAGGAATACTTTGAGCATGGAGACACCAAAGAGGTGGAGATGCTGCTCAAAGAGCTGAACTTAGGCCATCACAAATTTGAGTTCTCCTCTCTGgctgtgtctctttctctggaAGGCAAGGCCAGCCACAGGGAGCTCACATCACGTCTCCTCTCTGACTTGTCTGGAAAGGTGCTTTCTGAGAAGGACATGTCACGTGCTTTTGACAAAATGCTTAAAGAACTGCCAGACCTCATCCTGGATACCCCAGAGGCCCCACAGATGCTTGGACAATTTATTGCACGAGCAATTGCTGACCACGCTTTACCTATGAGTTTTCTTGACTGTTACAAAGGCAAAGTAGATTGTGACCATGCCAGAGCTGCCCTGGACAGAGCAGCAGTTCTTCTCTCCATGAAAAGGGAAATTATGCGGCTTGATAATGTGTGGGGTGTTGGTGGCGGACAGAGGCCTGTCAGACATCTCATCAAAGAGATGAACCTATTGCTAAAGGAGTACCTGGTTTCAGGTGAGCTCACTGAGGCTGAGCACTGTCTGCGAGATCTAGAAGTGCCACACTTTCATCACGAACTCGTCTATGAGGCTGTGATTATGGTACTGGAGTCTACAGGTGACACAGCCTTACAGATGATGGTCAAACTTCTCAAGGCATTCTGGCAAACTGGCCTAATCACTCTGGACCAAATGAACAGGGGCTTCCAGCGTGTGTATGATGAGCTGCCAGAGATCAACCTGGATGTGCCTCATGCGCACTCCATCATGGAAACCTTTGTGGACCTTTGTTACCAAGAGTCCGTGATCACTAAGCAGCTAAGAGACTCCTGTCCAACCAGAGGGCGCAAGCGCTTCGTGAGCGAGGGCGACGGAGGCATTGTGAAAAGTTAGAAGCTTCAGGAGAGTCCCGACAGACCCCGTTGATGAGCAGGCTGGGATCTCCTGCACGTCGCTGGGAATCTGTCCTCACCGTCTTCATTGCTCATCCTCTGAGTACACAGAAATATTCAGCCTCAGAAACAATATCATCCTATAGAAGAGTGACAACTGAGAAATGCTGTTCTCTCCTCTATTACAGGCCTCGTTTccttttgtttgtgaatttatgtGCGATTGTATGCAGTATAAGCGCTGCAGCGAAAGAAAGAAGTGGGGAAATCAGCAGCTTCAGATGGCCATGAAATACAGTTTAGGTTGAGggattaatgttgtttttttttgttttttttcagcttaaGTTTTTTCTGTTCACAAGTGTTCACTTGATAGTGCTCACAGTGGTCtctcaatgtttttcttttctttgcaatGTAATGCAGAAAATAAGGAGCACGTAAactaatgtattaaataaactgTGCTACTCGAATGAAGTGTTTAATCAAACTGTTGGGccaaaatacaatattttatgaaGCGATTGGGGTCACTTCTGttggttttcatttaattgcatgtttAGCTTCAAATTTGTCTTATAACTGTAAAGAAACTTTCCCACGTTTACAGATTCACAAGTTTCTGGGAGATGGCTtggttaatttttttggttattCATGAAAATATATACCTAACGCATGATGAAAACAATTCTAATTCTGAGTTTGTGGCGAGTTTTGACATCAAGAAGAACCTTGTTTTAGCTGCCAAAGAATGGAGGAGAGAGCATCATCGTCTCTCAGTCAGGCTGATGCCTGCGAGACTACAGTCTCCCATTTTCATAGCGGCTCAGACTTTTGTACCCTCTCTGTTTGAAGGTAATGTTCAGAGCAATCATTTTCACTTTCTGTTCTCTTGTTTATTTGGACAGAGAAAACCGGTTAAATTGTGACGGTGCAGAGTTAacgattattaaaaataattatcatttttgaaGTGGTAAACTTTGCAGCAAATTTTCCACCAGTTTCAATCAACACTCGTGGTTTCAGTTACATGATGGGaagaaatgactaaatttaACCAAAAGTACTTTTGTACATGCGATATCAGTCTTTGTATCTGTTGATGGGACGCTTTTTCAAAGTTtcgaaaacatttttgtcaaccAGCATTTCCAAAGTTTcagcattaaatacattttgacactaatttcaataaaaattcataatgctcata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006249238.1 lncRNA downstream 42946 14772740 ~ 14773920 (-) True LOC122336348
XR_006249191.1 lncRNA downstream 44136 14771467 ~ 14772730 (-) True LOC122336242
TU5041 lncRNA downstream 57841 14758120 ~ 14759025 (-) True G3495
TU5038 lncRNA downstream 66692 14749387 ~ 14750174 (-) True G3493
XR_006251961.1 lncRNA downstream 74230 14742108 ~ 14742636 (-) True LOC122353106
TU5052 lncRNA upstream 19999 14848025 ~ 14848576 (-) True G3502
TU5078 lncRNA upstream 70180 14898206 ~ 14918786 (-) False cxxc4
TU5112 lncRNA upstream 173259 15001285 ~ 15004288 (-) True G3546
TU5141 lncRNA upstream 401310 15229336 ~ 15229753 (-) True G3570
TU5143 lncRNA upstream 446858 15274884 ~ 15275311 (-) True G3572
XM_043238117.1 mRNA downstream 4119 14807902 ~ 14812747 (-) False gpank1
XM_043238110.1 mRNA downstream 4122 14807902 ~ 14812744 (-) True gpank1
XM_043249851.1 mRNA downstream 10619 14804654 ~ 14806247 (-) False si:ch211-145b13.6
XM_043249844.1 mRNA downstream 10619 14804654 ~ 14806247 (-) True si:ch211-145b13.6
XM_043249859.1 mRNA downstream 13012 14796045 ~ 14803854 (-) False kcnip4b
XM_043228273.1 mRNA upstream 34818 14862844 ~ 14865133 (-) True cdkn2a/b
XM_043228349.1 mRNA upstream 34818 14862844 ~ 14865128 (-) False cdkn2a/b
XM_043227321.1 mRNA upstream 70175 14898201 ~ 14918616 (-) True cxxc4
XM_043234883.1 mRNA upstream 131139 14959165 ~ 14963133 (-) True ppa2
XM_043249976.1 mRNA upstream 148337 14976363 ~ 14979418 (-) True ints12
TU5035 other downstream 67891 14746829 ~ 14748975 (-) True G3491
TU4627 other downstream 932630 13882278 ~ 13884236 (-) False LOC122350629
TU4632 other downstream 974223 13841542 ~ 13842643 (-) False LOC122350606
unassigned_transcript_100 other downstream 1427541 13389253 ~ 13389325 (-) True trnar-ucg_69
unassigned_transcript_99 other downstream 1428360 13388434 ~ 13388506 (-) True trnar-ucg_68
TU5081 other upstream 97059 14925085 ~ 14925363 (-) True G3522
TU5072 other upstream 192616 15020642 ~ 15029620 (-) True G3515
TU5142 other upstream 402513 15230539 ~ 15230886 (-) True G3571
XR_006251556.1 other upstream 1241151 16069177 ~ 16073920 (-) False alg11
XR_006250498.1 other upstream 2987798 17815824 ~ 17880417 (-) False znf827

Expression Profile