RNA id: XM_043240940.1


Basic Information

Item Value
RNA id XM_043240940.1
length 1665
RNA type mRNA
GC content 0.45
exon number 4
gene id cplx2l
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 7762381 ~ 7770526 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACACCGCATTTCTcacggctgctgctgctgctggaggtGCGAGGGGCGCGAGCAGGTGCTGTCCGGCGAAGGTGGTGCTGAAAGCGGCTCGTGCGCTAGATAGAGCCGAGCCTTTGCGGCGGGGGTTCAAGTAAGATTTGGCTGGACGATCTCTGCTCTCATACGTTTGAAGTGCCAAGTACAAGGACGGGAACACTTGAAAAGCCATCATGAATTTCCTGCTGAAGGCAGCTTTGGGAGGAGGCCCTCCTGATGTTGGTAAAATGctgggaggagaggaggagaaagatcctgaagcagaaaaagagaaagaagaagaaagacaggAAGCTCtgagacaggaagaggaagagaggaaggCCAAACACGCCAAGATGGAAGCAGAGCGGGAAGCCATAAGACAGGGCATCAGGGACAAGTATGGCATCAAGAAGCGCGAGGAGGCCGAAGCGGAGGCGCAGGCGGCGATGGAGCAGGCGAGCGAAGGCAGTCTGACCCGTCCAAAGAAAGCGGTACCGTCCGGCTGCGGAGACGACGAGGAGGAGGAAAACATCATGGACACGGTGATGAAGTATCTACCCGGCCCGCTGCAGGACATGCTGAAGAAGTAgttccctaaaaaaaaaaatctcaagcACACGCAGctttagatattattttaacGTGTGCTGACTTCGGAGAGAAGAGAGCGCACTAGAGCAAAACACCGACTACACCATTTACCTTTCACACATTTCAATCCGCGAGGAGCTTTAGATATTAGCGACAGatcaaaatcaatcaatcaatcgagCAGGAGGGGTTAATTATCAGAATATAAGCCATATTTTATCTTTACAGGGAAACCTGACTCACGACATCTCTTCGGCAGTTATTTCTTATTCAATACGTAAACAGCaatatatatgcatgaattGTTCGAGTGTCTATTCCACTGTTTTGTATCACCAATCGATAAGGTTTTCCACGTTCATTTAGCGATCgatatgaggaaaaaaaaaaatacttggtTGAAGACATTCTGGTCTTTGCATGTGTCCATAGTGTTCGTGTGCTCACCGCCATCTTGTTTTTGTCGCTGCAGAGATTGCAATCAGATAAAGAAGGCAATAACATTCTCCCACGCTGTAAGCTAAATGACAACTACTTTGTACGTTTGTCGCTACGCCATTTAGTTCATTCTGGCAAACTCTGTCACAGATGCACTGTAGTTTCATCGGTCTGGAACATTCAATGCCTCAATTGAGTTCAACAGTGTTGTCGAGACTGCGTTCTCGCACCGTTTTTGTGCTTTACGACAGATTCTGAATTTACGAAGATTTCTGATTTTAAGATTGAAACTCAGTTTCACAGGGACGCTCTGTGTTTCGAATGGACTGTAATTTCTCTGGTTTAGGGCCAGGGGGAATTTTCGTCTGTGGTCTACAACATTCTCAGCAATAATAACGTATTCTGTTCGCTTGGCTTGCAGTAAAACGAAATAAAATCGTAAGAGTGTATGAATGGCtctgatgattaaaaaaaaatgatgataatgTCAAAGGTATGTCTGTCTTGAGATCTGTTGGGTATATGGAATTGTAATAAACCAATCACACATATCTTTTTTGGTGTTTCGATACTAAAATATAGCAATTAACggaattaaaatattcaaagagAAAA

Function

GO:

id name namespace
GO:0006836 neurotransmitter transport biological_process
GO:0019905 syntaxin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2585 lncRNA downstream 101849 7656078 ~ 7660532 (-) True G1781
TU2428 lncRNA downstream 446063 7315910 ~ 7316318 (-) True G1663
TU2425 lncRNA downstream 449483 7312252 ~ 7312898 (-) True G1660
XR_006250485.1 lncRNA downstream 464236 7297494 ~ 7298145 (-) True LOC122341717
TU2397 lncRNA downstream 592359 7167577 ~ 7170022 (-) True G1642
TU2672 lncRNA upstream 183076 7953213 ~ 7984303 (-) False G1845
TU2673 lncRNA upstream 210634 7980771 ~ 7984303 (-) True G1845
TU2691 lncRNA upstream 305038 8075175 ~ 8077330 (-) False LOC122341751
XR_006250489.1 lncRNA upstream 306564 8076701 ~ 8077387 (-) True LOC122341751
TU2701 lncRNA upstream 368346 8138483 ~ 8167387 (-) True G1868
XM_043241517.1 mRNA downstream 32641 7722102 ~ 7729740 (-) True b4galt1
XM_043249867.1 mRNA downstream 45056 7706885 ~ 7717325 (-) True LOC122352459
XM_043237392.1 mRNA downstream 75526 7684099 ~ 7686855 (-) True pla2g12a
XM_043240125.1 mRNA downstream 113787 7624106 ~ 7648594 (-) False grk4
XM_043248886.1 mRNA upstream 35555 7805692 ~ 7818399 (-) False sclt1
XM_043248874.1 mRNA upstream 35555 7805692 ~ 7818399 (-) False sclt1
XM_043248882.1 mRNA upstream 35555 7805692 ~ 7818224 (-) True sclt1
XM_043247042.1 mRNA upstream 402200 8172337 ~ 8179576 (-) False pcdh18a
XM_043247033.1 mRNA upstream 402200 8172337 ~ 8179575 (-) True pcdh18a
XR_006250550.1 other downstream 466702 7218986 ~ 7295679 (-) False dmd
XR_006250549.1 other downstream 466748 7205584 ~ 7295633 (-) False dmd
TU2401 other downstream 592960 7162323 ~ 7169421 (-) False G1642
XR_006250919.1 other downstream 634974 7071589 ~ 7127407 (-) False trpc5a
TU2105 other downstream 1220998 6539528 ~ 6541383 (-) False LOC122342514
TU2800 other upstream 833163 8603300 ~ 8607795 (-) True G1926
TU2970 other upstream 1009081 8779218 ~ 8782587 (-) False LOC122351550
TU2978 other upstream 1024934 8795071 ~ 8798355 (-) False LOC122351550
TU3335 other upstream 2629050 10399187 ~ 10401686 (-) True G2302
TU3397 other upstream 2971785 10741922 ~ 10745896 (-) False LOC122347930

Expression Profile