RNA id: XM_043241164.1


Basic Information

Item Value
RNA id XM_043241164.1
length 1964
RNA type mRNA
GC content 0.44
exon number 12
gene id vps37a
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 9799826 ~ 9805483 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACGGGTTGTTTTCTTGCGAGCCCGTGTACTTCAGACAACAGCCTAATCTGTTATAGTGTTCCTAAAACtcaacatatgtttttttttagcagacaCGAGCGTCTCATTTATGTTTATCGTTCACTCGTTTAAACGGCTGTTAGGTCGCTACAGCGCTAAATAGGGTCGTAGCTAATGCTAATGGTGGCGTTGGGTATTTCTCgaatttctgtttcatttcatCAGGCCTCTTCAAACTGACACCACCGAGAGATTACGGCGTTAGTTGTCGTTTTGGCAGTCGAGAATGAACTGGATTTTCCCCCTGTCCAAGGGCTCTGGATCGATCCCTCCTCTGAACAGTTTACAGAaacaaagacagagacagatcgAGTCTCTCAAAGCTGCTCACTCCAACCTTGCAGAAATTCAGAAGGATGTAGAGTATAGACTTCCTTTCACTGTCAACAATTCAACTATTACTGTCAATAtCTTGCTCCCACCGCAGTTCCCTCAGGAGAAACCAGTGGTCAGCGTGTTTCCACCAGTAGGTCATCATTTAGTAGACAGTAACAATGGAACAATGGTTACCAGCCCGCTTATAACTAAtTTCGGAATGCATTCAGATTTAGGAAAAGTAATTCAGAGTTTGCTAGATGAGTTTTGGAAAAGTCCTCCTGCCTTGATGTCAGGTCCCACCTTTCCTTATATGTACAAACCATCGGGGATGCCTCCTTACCCAACTCAGAGCTTCCATTTTGTTCCTGCCTTCCCACCACAGGATGGTCAGCGGACTGTCGGCCCTGCCCCTGTGCCACATGCAGGGGTAGAGCCTCAACAAGCCTCTCCTCGACCAGCAGCACCCACTTATGGACTCATCACAGACCTTCCTCTTCCTGTACCAACCGCTGACTCACAGTCAGGTCTGAACGGACACATATACAGGATGCCTGAAATCCCAGATACATTTCCAGAACTGTCTGAGATGAGTAATTCTCAACTGAAGGACATGAGTGATCAAGACGACGTGCTCTTGGAGTTCTTCATGTGTCTGCCTCAACTCAAACAAGTAACCTCTGACAAAGAGGAACTGGTCAACAACATCGTGGAGATGGCCAAGAAGAACCTACAACTCGAGCCTCAAATGGAGAACAAGAGACAAGAGATGTTGTGTAAAtaTGAACAGTTAACCCAGATGAAGTCTGCATTTGAAACCAAAATGCAAAGACAACATGAGCTGAGTGAGAGCTGCAGTCTGAGCGCATTGCAGGCCAGATTAAAGGTAGCAGCCCATCAAGCCGAAGAGGAGTCCGAGGAGACGGCAGAAAACTTCCTGGAAGGAAAGACAGAGATTGACGACTTCTTAGCCAGCTTCATGGAAAAGAGAACGctttgccattGCAGAAGAGCCAAAGAGGAAAAGCTTCAGCAATGCATGAACACACACGGACAGTTTCCTACCACACATTAGATTGAATGTCCCAGAAAGGATCGGGATCAATCTACCAGCAGATATCGGTGGGCTTAAGACAAGCAGCACATCCTGTGACCTACAGCCTTGATTGGGCAAACCTAGATATATATACGGAAAAAAGATTTTGGCgtcattatttactgaaatcAAAGTGATTTTTGCACAGAATTTCCAATAGTGTTACGCTATCCCTGATTGAGTAAGAGCAGATGTGAATATGTCTGGATGTGCCCAGTCTGGCCGTGACCCAAAGGCTGTAATCAGAGGAAAGCAATCTGTTCTTAATAGTGTTCAGAAACAGGCTGAGTTCTAAGCTTATTAGTTCAGTTTGAGTTTATGTGACAAATGGGGTTGGGCCTTGTATGCACTTGAAgataaattttgaaaaatgttaatgctGCCGacaaaaacatactgtatttaataatgttgATAAAAGCCTTTATTATGATTAGACACtgtattatatgtttatttaatttgataggttaataaaacatttagaataatC

Function

GO:

id name namespace
GO:0007626 locomotory behavior biological_process

KEGG:

id description
K12185 VPS37; ESCRT-I complex subunit VPS37

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3114 lncRNA upstream 12665 9784218 ~ 9787161 (+) True G2149
XR_006252042.1 lncRNA upstream 737217 9061961 ~ 9062609 (+) True LOC122353659
XR_006251927.1 lncRNA upstream 746353 9051908 ~ 9053473 (+) True LOC122352814
XR_006251869.1 lncRNA upstream 768003 9030823 ~ 9031823 (+) True LOC122352408
TU2882 lncRNA upstream 1057305 8740832 ~ 8742521 (+) True G1979
TU3213 lncRNA downstream 273402 10078885 ~ 10079470 (+) True G2219
TU3247 lncRNA downstream 567479 10372962 ~ 10373847 (+) True G2246
TU3429 lncRNA downstream 1022202 10827685 ~ 10829530 (+) False G2350
TU3428 lncRNA downstream 1029548 10835031 ~ 10837245 (+) True G2350
TU3431 lncRNA downstream 1032142 10837625 ~ 10838465 (+) True G2352
XM_043248715.1 mRNA upstream 5630 9771041 ~ 9794196 (+) False micu3a
XM_043248734.1 mRNA upstream 5630 9771041 ~ 9794196 (+) False micu3a
XM_043248711.1 mRNA upstream 5630 9771042 ~ 9794196 (+) True micu3a
XM_043248752.1 mRNA upstream 5630 9771042 ~ 9794196 (+) False micu3a
XM_043248761.1 mRNA upstream 5630 9771043 ~ 9794196 (+) False micu3a
XM_043236706.1 mRNA downstream 21620 9827103 ~ 9863686 (+) True mtus1b
XM_043245813.1 mRNA downstream 60681 9866164 ~ 9888659 (+) True pcm1
XM_043246000.1 mRNA downstream 60681 9866164 ~ 9888659 (+) False pcm1
XM_043245884.1 mRNA downstream 60681 9866164 ~ 9888659 (+) False pcm1
XM_043246075.1 mRNA downstream 60681 9866164 ~ 9888659 (+) False pcm1
XR_006252049.1 other upstream 2178 9797430 ~ 9797648 (+) True LOC122353686
XR_006252048.1 other upstream 3397 9796214 ~ 9796429 (+) True LOC122353681
XR_006252046.1 other upstream 4412 9795199 ~ 9795414 (+) True LOC122353673
TU3085 other upstream 387389 9408405 ~ 9412437 (+) True G2125
TU3004 other upstream 764226 9035086 ~ 9035600 (+) True G2063
TU3224 other downstream 439674 10245157 ~ 10245578 (+) True G2230
XR_006251239.1 other downstream 451179 10256662 ~ 10333672 (+) False fat1a
XR_006251240.1 other downstream 451179 10256662 ~ 10333672 (+) False fat1a
XR_006251241.1 other downstream 451179 10256662 ~ 10333672 (+) False fat1a
XR_006251238.1 other downstream 451179 10256662 ~ 10333672 (+) False fat1a

Expression Profile