RNA id: XM_043242296.1


Basic Information

Item Value
RNA id XM_043242296.1
length 3113
RNA type mRNA
GC content 0.47
exon number 12
gene id cracdlb
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 24652160 ~ 24665390 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGGCCAATCACGCGCGCTCACTAGTGTCTTTGGGTCTCCGAGCTGCGCGCTTTTTGTTGACGATCTAAGCGCAGGTGCGCGCTTCTGCATCTCCATTTCGCAGAGaTGCCAGTGATCTAAAGCTATCAAGGACTGGAGACCAccacaaaaaaagcacaaaaaaccCAAAGAAGACAACAAAGGAAGCTCtgagaagaggaagaaaattcTGCATCAACTTAAAGCTTCTGATCAGCGGATAAAAACATGGAATCCAGCTCTGgagaaatggacaaaaatggAGAGGAACTCACAGGAAGGAAGAAGTCCCGCTTTAAGCAGCTGAAGACACGTCTCTTTGGGAAACTGAAGAAGAAGGAAAGCGAAGGGCTGATTAAGCAAAGCCAGTCTGCTAGTGACATTGCTGCTCCAGAGGGCCGAAGGGAAGGCTACGATTCTGAAGACGAGTTTTCGTTCCCGCAGGGTCTTAgctcccgggcgctttcccacgaCAGCATCTTCATCACAGACCAGACCTCGTCCACAGAACCGACCCGGGTTCTTTCGCAAGAAAACGTTCATGGCAAAATTAAGGCTTTACAATTGAAACTACAGCAGCAAAACTTACATCTAGGTCCTCCTCCAATCCTGATTCCCGGTAAACGTATAGAGGACTCAGGAACCACTTCAGAGGATGATGGTTTACCTTGCAGCCCACCTGAGATGTCTTTCCATGAGCGAGTCATGCACGAAGCAGTTTATAAGTACCCCGAATCTCAGAAACATCTAAGCTCTCTGAGTTTagcaggaacaggaagtgaagAAGAGGAGCAGGGCGATCCTTTCCAGCCATCATCAAGGCCTCTGTCTCCAGTCTCCAAACTGTGTCCTCAGCCAATCGTCTCTGCCGCCTCAGCCTGGACCACGCCCACCGCAGGGGTTGACTTCAGTAGCCCTGCAGGTTTCATGCAAAGGTTGGATAACTCAGCCGCCCGTCACCGCATGTCAGTCAAACCGAGGAACCAACGAGCCAGTACAAGGGGGAAACGAATGCCAACAGTATCTCTTTCTCCCAGGCTTCGTTCAGAAAGCATCAGTGATTTGGATAATGTTCTGtctgaagaagaagatgaaacCATGACGTCCACTGAGACAGTGAACCAGTACTCGTACTGCTCTCCGACTTTGGAGCTAACAGAAAAACCCGCAACTCCAGAACCTACAGAAACAAGTCCAGAAACGTCAGCGCAGGACCAGGAGGAGAACCctaacagaactgaaatcaatTTCCCAGCTTTGGGTGTTGAAATCCTAAAGCCAGAAGAGTCTCTTGAAACTGAGGGGAAAGTCACCTCGAATCCCCTTTATTTGCAGCCTATGACTTTTAGCTCGATCTGCTCAGGTCCACCGTCACCTTCAGGACTTCCAGAATCTACAGCACCATCAAGGGAAGTAGAGTTATTAAGAGCCCATTCATCTATCCAGACAAATGTTAGAAACAATATCCAGATTCAGATCAGTGAGAATCTCATGTGTGACACAGATAAAAAGGAAAGTATCCAGGAAGAAGCAACATTTAGACCACATCCTGTACCTCTGCCTCGCTATATAAAAAAGCCCAAAATGGAAATAAGGAGCCCTCCGTCTCCAAAAGGAGCTGAGGAAGCCCTAACGAAACTTTGGGAAGCCGAAGTAGAAACGGCACCTAGCACTGGATCAGTCCAATTTTTAATTGCATCTGCAAAGTATCGCTCCAAATCAACCAGTGACACAAAGCAGAACGAGGGCCATTTGAAATATTCTCCAGGAATCAAGACCCAACCCATCAAACCCAATCCAGAGTCGCAGAAAGATGAAGTGAGAGAAACAAAACCAACGGAGCTTCAGAATCTCCTCCATCAAACGCAAGAGCGAAAAAGCAGTTTTCATAGAGAAGTACCACCACCTGTTACGTCCAAACCAACAACAGGAACCAGTCTTAGGAAAGCAGACACGTCTACAGAACAACATGTGGAAACAGAGAAACTGGAGGAACCTGAAGAGAGGAAGAGTGCTTTTGGGGTGCATCTCCGCACAACTTCTCTGTCCCTGAAATATCGCTCAGAGGTTTCTAAAGTCAAGGATGAAACCAAACGTTACAGTTTAGAGTCTAATACAGTGACAGAAGTCTCCAaagagcatgctgggaaagcAGAAACCTTCAGGAACGTGTGTGACAGCAATTCCAAGAGTAAACACAGTGTTCCCAAAAAAGTAGATTCACAGAGCCTGGACTTTCCGCTTGCTGCCCAAGACAATGGAAGACCTTCTGTCCCAAACACAACAGGAGCAAGTAAAGAGGCTGTGTCCGAGCCGGGCTGGATGAGTCTGGCCAGGGAGAAGACCAGAGCCTACCAGCCATTCCTGGGCAGATTAGCCACAAATCATTCACCTGTCCACCCCACATCTCCAACAGCTCCTCCAGCACAGCCTCTCAAACCAGCCTTACAGCCTAAAACACCGCTACTGAACGCCTCGATTCATCCACAGAAAACAGCCAGCCTACAGACGTCCTCGAGACCTCCAGCAAAACCAGCAAAAGACTGGCAGGATAAAGGGAGGAACAGCACACCAGAAGATGACCCGACGAAGAGAGCAGCAAGACCCACAGCGCCTTGCAACAACGCAGAAGCACTTACTGTCACATCTGAGCCTCCAGCAACCTCACCTTCATCACCAACAGACGTctctcagcagcagcagccacgGTCAGACGGGGCTCAGCCGTCCTGGATGGAGCTCGCCAAGAGAAAGTCTTTAGCCTGGAGCGACAAATCTTTAGATTTAAGCTGAGACATTCAGCGACGAACTGATGAAGTGGTGCAATATCTAATGTTACAATGAATGCATGTAATACGGAGCGTGTTCGTACATGACCGATTGAGTGCGACTGAGTGATAGATTTTAGAATTAGAATTGATTCGCATTAATAAGATTTACACAGACGTTTGTGATATGATCAAGCCTTGTTATATGCAAAAGTGAGAAAGAAGAACATTGTATATATGTAGTTAAACGCCGTCTTTGTAGTAGGTTACACCAAGCTGATTCCCAAATCTGATACAGCGATAATAAACTATGAAGTTAAACTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8402 lncRNA downstream 90707 24560839 ~ 24561453 (-) True G5780
TU8387 lncRNA downstream 100280 24551583 ~ 24551880 (-) True G5769
TU8380 lncRNA downstream 143693 24503083 ~ 24508467 (-) True LOC122362739
XR_006253177.1 lncRNA downstream 144135 24502973 ~ 24508025 (-) False LOC122362739
TU8762 lncRNA upstream 23788 24689178 ~ 24689696 (-) True G6019
TU8806 lncRNA upstream 147923 24813313 ~ 24813523 (-) True G6049
TU8809 lncRNA upstream 175524 24840914 ~ 24863374 (-) False LOC122345669
XR_006251020.1 lncRNA upstream 176371 24841761 ~ 24863087 (-) False LOC122345669
TU8811 lncRNA upstream 179311 24844701 ~ 24863374 (-) True LOC122345669
XM_043251003.1 mRNA downstream 50168 24563258 ~ 24601992 (-) False lef1
XM_043251014.1 mRNA downstream 50168 24563258 ~ 24601992 (-) True lef1
XM_043241322.1 mRNA downstream 154791 24451570 ~ 24497369 (-) False npnta
XM_043241356.1 mRNA downstream 154791 24451570 ~ 24497369 (-) False npnta
XM_043241314.1 mRNA downstream 154791 24451570 ~ 24497369 (-) True npnta
XM_043237562.1 mRNA upstream 448 24665838 ~ 24674545 (-) False tsga10
XM_043237553.1 mRNA upstream 448 24665838 ~ 24674545 (-) True tsga10
XM_043237513.1 mRNA upstream 25592 24690982 ~ 24707177 (-) False col17a1a
XM_043237511.1 mRNA upstream 25592 24690982 ~ 24705812 (-) True col17a1a
XM_043229035.1 mRNA upstream 78244 24743634 ~ 24784452 (-) True fam13a
TU8153 other downstream 480098 24167112 ~ 24172062 (-) False G5624
TU8816 other upstream 203051 24868441 ~ 24870465 (-) True G6056
TU8851 other upstream 307101 24972491 ~ 24973371 (-) True G6073
TU8856 other upstream 323386 24988776 ~ 24993345 (-) True G6074
TU8865 other upstream 329093 24994483 ~ 24995820 (-) True G6078
TU8873 other upstream 361273 25026663 ~ 25028129 (-) False LOC122349000

Expression Profile