RNA id: XM_043242291.1


Basic Information

Item Value
RNA id XM_043242291.1
length 1088
RNA type mRNA
GC content 0.52
exon number 3
gene id rasd3
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 6288730 ~ 6292181 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGAGCAGTAGGTTTAGGGCTCGGATTCAACAACTGTTTTCTCTGTCTCATCGCTGTATTAACAGTGAAGTAGATTAAATATTAGCTTGCCTACTAACCTCAGCAGAAATCACTGAATAATTTCAAAAACGACTACAAAGTCTACAACACGGAAACCCACGCGTCGCGTCATTCGCGTTTCCATTGGCTGCATCCAGTAGGACGTAGGACGCGCGCAGACTACGAACTTAACAATTGAAGCGATGTCTTTGCTGGTGCGGGATCGTCGGACGGTGCGCTTTGTGTTTTTGGGCGCCGCCGGGGTTGGAAAAACCGCCCTGATCACCCGTTTCTTGCAAGATCGCTTCGACTTCAAATACACGCGCACCGTGGAGGAGCTTCACGCTCTTGAGTACGACACAGACGGCGAGAGGGTGCGCATTGAGATCTTGGACACGAGCGGCAGTTATTCCTTCCCAGCCATGCGCGCTTTGTGCATCCGAACCGGGGACGCGTTTGCGCTCGTGTACGCCGCAGACCAGCCAGACTCCCTGGAGGAGGCGCAGCGGCTCCGCGAGGAGATCCTGGAGGTGAAGGGAGAGAAGTTTACTGGAATCACGGTGATTGAGAACAAAGCGGACCTGGGCAGCCGGGGTCGCCAGGCCACTGCGGAGGTGATGCGCGCGGTGGAGGAGGACTGGGGCGCGGGCTTTGTGGAGACTTCTGCGCGCACCGGAGAGAACGTCAACGGCGTGTTTCGGGACTTGCTTCAACAGATGAAGTTACCGAGCCGCGTGAGCCCGGCACTGCGCAGACGAACGCAGACAATGAGCAGAGAACTTACGGAGACGCGGAAAAAGCCCCCGTTGAAGAAGAACAACAGCTGTATCTTGTCTTAATAGACATTCGCGTGATATTATAGTTGTGCATCATACTGATGCTTAAGTGGTCTGGATCAGTAGACTCCACAGATATGTTGGACAGTTTTAATGAGACTGAATGGGTCTGATGCATTATCATAATCATTAAAGAGGTTTTTGCCTATGTTTGATCTCGTTAAATGAGAGCCAAAGTGTTATTTTATGAgggaataaatgcaaatgatgttCT

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1900 lncRNA upstream 8099 6279217 ~ 6280631 (+) True G1301
TU1874 lncRNA upstream 11442 6227292 ~ 6277288 (+) True G1292
TU1878 lncRNA upstream 11442 6227292 ~ 6277288 (+) False G1292
TU1877 lncRNA upstream 11442 6249630 ~ 6277288 (+) False G1292
TU1866 lncRNA upstream 67334 6219924 ~ 6221396 (+) True G1287
TU1950 lncRNA downstream 39895 6332076 ~ 6345567 (+) True G1332
TU1949 lncRNA downstream 47365 6339546 ~ 6343720 (+) False G1332
TU1948 lncRNA downstream 51744 6343925 ~ 6345567 (+) False G1332
TU1971 lncRNA downstream 108211 6400392 ~ 6400757 (+) True G1348
TU1981 lncRNA downstream 144773 6436954 ~ 6437177 (+) True G1357
XM_043242036.1 mRNA upstream 21229 6262422 ~ 6267501 (+) True cacng3a
XM_043241842.1 mRNA upstream 27982 6233036 ~ 6260748 (+) True prkcba
XM_043241833.1 mRNA upstream 35033 6233080 ~ 6253697 (+) False prkcba
XM_043241721.1 mRNA upstream 57548 6226398 ~ 6231182 (+) True tlr2
XM_043242171.1 mRNA upstream 175205 6107861 ~ 6113525 (+) True zgc:77849
XM_043241895.1 mRNA downstream 2568 6294749 ~ 6299522 (+) True plk1
XM_043241683.1 mRNA downstream 21789 6313970 ~ 6327004 (+) True chtf18
XM_043241690.1 mRNA downstream 21789 6313970 ~ 6327004 (+) False chtf18
XM_043242026.1 mRNA downstream 65647 6357828 ~ 6362500 (+) True uncx4.1
XM_043241760.1 mRNA downstream 187955 6480136 ~ 6619283 (+) True elfn1b
TU1931 other upstream 1532 6285858 ~ 6287198 (+) True G1318
TU1714 other upstream 201075 6057404 ~ 6087655 (+) True G1183
TU1696 other upstream 407596 5879460 ~ 5881134 (+) True G1168
XR_006251062.1 other upstream 1311884 4967186 ~ 4976846 (+) False gtf3c3
XR_006251076.1 other upstream 1343889 4938183 ~ 4944841 (+) True prkag3a
TU2062 other downstream 241321 6533502 ~ 6536957 (+) True G1414
TU2119 other downstream 419454 6711635 ~ 6845548 (+) True G1447
TU2148 other downstream 487437 6779618 ~ 6782141 (+) False rgs11
XR_006251795.1 other downstream 554319 6846500 ~ 6858568 (+) False LOC122351737
TU2312 other downstream 854956 7147137 ~ 7152220 (+) True mpc2a

Expression Profile