RNA id: XM_043242487.1



Basic Information


Item Value
RNA id XM_043242487.1
length 804
RNA type mRNA
GC content 0.43
exon number 4
gene id LOC122347302
representative True

Chromosome Information


Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 28191706 ~ 28192763 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ATGGTGTTTTTGGTCATTCTTCTGCTGGTGTTTCTGATGACTGAATGCAGTCAGGCAGTATATACACCAGCTGATTGTTCTGATATTTATAACTCAGGAGAAACAGTCAGTGGGATCTACTCCATCTATCCAGCAGGTGATGTTCCCGTCTCAGTTTACTGTCAGATGATCTCAGATGGGAACGATGCAGACAGAGGAGGATGGACGGTGATTCAGAGGAGAATGGATGGCAGCGTGAATTTCTATCGGCCGTGGGATCCGTACAAGACAGGATTTGGGAATATAGAGAGTGAATACTGGCTGGggcTGGAGAACATGTATCAACTGACACTCACCAGGTATTACATGCTGAGAGTGGATCTGGAGGACTTTCAAGGAAATAAAGCTTTCGCTCAGTACTCGTTCTTCTCTGTTGGTCCTGAAGCTGATGGGTATCTACTGAGTGTTTCAGGGTTCACTGATGGAGGAGCTGGTGATTCTTTATCTGTTCATAATGGATTGATGTTCTCCACTTTTGACAAGGACCAAGACCTCAGTTTAGATAACTGTGCCAAAACGTATCTTGGAGCGTTTTGGTACCAGTCCTGTCACTTTACAAACCCCAACGGCTGGTATTTGTGGGGAGAAGATCCCACCTATGAAGCTATTGGAAATGTTTGGGCAACATGGAAGGGTAATAATGTTGGAATGAAATCCATCACCATGAGGATCAAACGTGTTTCTTAGAAGCCTTACAACACTCCTCAGAAATAATAAGAAGCAGCaacaaaattaaagtaatattttcccTTCTATCTTAACTAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU10557 lncRNA downstream 76779 28109682 ~ 28114927 (-) True G7182
TU10548 lncRNA downstream 117400 28073917 ~ 28074306 (-) False LOC122349330
TU10453 lncRNA downstream 190227 27960574 ~ 28001479 (-) False G7125
TU10524 lncRNA downstream 227072 27961915 ~ 27964634 (-) True G7157
TU10523 lncRNA downstream 233707 27956825 ~ 27957999 (-) True G7156
TU10636 lncRNA upstream 29493 28222256 ~ 28223230 (-) False nxnl1
TU10641 lncRNA upstream 46093 28238856 ~ 28239695 (-) True G7238
TU11036 lncRNA upstream 71634 28264397 ~ 28285334 (-) True G7480
TU11054 lncRNA upstream 116141 28308904 ~ 28803891 (-) True G7491
TU11059 lncRNA upstream 118361 28311124 ~ 28747639 (-) True G7492
XM_043242481.1 mRNA downstream 3768 28186723 ~ 28187938 (-) True LOC122347290
XM_043245336.1 mRNA downstream 115061 28066047 ~ 28076645 (-) True LOC122349330
XM_043250471.1 mRNA downstream 129616 28057106 ~ 28062090 (-) True LOC122352802
XM_043245320.1 mRNA downstream 139206 28050085 ~ 28052500 (-) True LOC122349325
XM_043245309.1 mRNA downstream 144795 28045169 ~ 28046911 (-) True LOC122349314
XM_043246520.1 mRNA upstream 25519 28218282 ~ 28220347 (-) True LOC122350202
XM_043249779.1 mRNA upstream 28136 28220899 ~ 28223247 (-) True nxnl1
XM_043245377.1 mRNA upstream 78806 28271569 ~ 28273549 (-) True LOC122349362
XM_043261700.1 mRNA upstream 80955 28273718 ~ 28278609 (-) True LOC122360767
XM_043261654.1 mRNA upstream 80955 28273718 ~ 28277635 (-) False LOC122360767
TU10496 other downstream 115262 28074648 ~ 28076444 (-) False LOC122349330
TU10417 other downstream 252254 27754782 ~ 27939452 (-) False G7105
TU10420 other downstream 252254 27754782 ~ 27939452 (-) False G7105
XR_006250838.1 other downstream 936639 27241224 ~ 27255067 (-) False LOC122343833
TU10183 other downstream 989139 27197905 ~ 27202567 (-) False LOC122344379
TU11020 other upstream 51365 28244128 ~ 28248523 (-) True G7475
TU11081 other upstream 198276 28391039 ~ 28392053 (-) True G7508
TU11094 other upstream 213419 28406182 ~ 28446591 (-) True G7515
TU11106 other upstream 330942 28523705 ~ 28525551 (-) True G7527
TU11178 other upstream 856980 29049743 ~ 29128775 (-) False G7563

Expression Profile