RNA id: XM_043242601.1


Basic Information

Item Value
RNA id XM_043242601.1
length 5627
RNA type mRNA
GC content 0.49
exon number 17
gene id rgs12b
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 19995190 ~ 20032019 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cctgcttcTGCTGTCCACACACCAGCTGCCCTCTCCTTTTGTTTACTCCTTATGCAGCACTAAGGTTACCATGTCATTAAACTTCACATCAGGTTGGGACACATCCGTCACAAGTATTGTATGACTATTCAGCCATGCACCATGTTTGTGCCTTAGACTTGGACTCTGGAGCTGGAAGGATGACATCACTAAACTCACCATTTCTGCTTGTGTGAGTCAGAAGAGAGTAAAACAGGGGCAGAAACCAGGATGTTCAGACAATCAGAGCAAGGCAGGAGGCGTGTGAATGCCCAGCCATCTGCGCGCATAAGAGGGGTGGAGGTTGCGAGGGGAAGAACAGGCTATGGCTTCACGCTATCTGGTCAGTCTCCATGTGTGCTCAATTGCATCCTAAAGGGTAGTCCTGCTGACTATGTGGGCCTTCGCTCTGGAGATCAGATACTAAGCGTGAATGACATCAATGTGTCTAAAGCATCTCACGAGGATGTTGTCAAGCTGATTGGTCGCTGTACAGGTGTCCTACACTTGGTCATTGCTGAAGGCAGTCATAACAATGCACATCTAGATTCATGTTCAAGCGATGAAGAATTGGGCTTCCATGACCACAAGAGCCACTGGCTGAGGCCAAAGATAGACTCAAAGACACTGGGCATAAACCGTGCAGAACGTGTAGTTGCAGAAATGCAGTCTGGAGGAATCTTTAACATGATCTTTGAAAATTCCAGCCACTCATCCAGCAGCTCGGAGAAGGCAGTGGCTTGTGCCTCTGCGTCCAAAACCAGAGCTCACTCAGAGCCAGACTTCTCGTATGGAAACGCCGGCACCCGACAGAGCAATCCCAACTTGCTCACTGAAGAGGAGATGGCCAAAGTGCTCAATGATGACTCTGTGTTCATTGATATGTTTGAACAGCAAGATGAATTTGACCTTTTGCAAAATGCAGACTCTGCGGGTATACTCAACGTTGGGATGGTTGTGGGATACTTGGGATCTATAGAATTAGCTTCGACAAGTGCCAATTTGGAAAGTGACAGCCTGCAGGCGATTCGTGGCTGTATGCGACGTCTGCGCGCAGAACAAAAAGTGCACTCGTTGGTCCTGCTCAAAGTCATGCATGATTGTGTACAGCTGTGCAACGATCGAGGTGCTGTTCTAGCCACTTACCCTGCAGAGAAATTAGCATTCAGTGCCGTGTGTCCAGACGACCGACGCTTCTTTGGCCTTGTCACCATGCAAGCCACAAATGACCATGCCATGAATCGGCACGGTGAGGAGGAGCAAGGTTTGCGTACGTCCTGTCACGTCTTTATTGTAGACCCTGAACTCTGTCACCATAAGATCCACCAATGTGTAGCCCGGCGCTTTGGCTTTGACTGCACTCCTGACACGGATACCGGTGGCTGCTTGGAGTTCCCACCTACCTCCCAGCCTCTTCTACAGTTTGTGTCAGTGCTTTACCGTGATATGGGAGAATCTATAGAGGGTATGCGAGCTCGAGCGTTCCTCGATGGGGATCTAGATGCTCAGCAGAACAACAGCACAAGCAGCAACAGTGACAGTGGCATTGGCAACTTCTTGCCAGAGGAGAAGAACAACCGCGTCCTCTTGGTTGACTTGGGTGCCAACCCTAGTCGCCATGTTCCCACAGGACTATGGGAAAACCCACCAGGACCTCGTAGCCAAAGTGTCCTTGGAGGTCTTCCACCACCACCACCGCCTCCACCGATCTCGCATCGTAATGGCTACCGCCCTGACCAGTTTGCAGATCACCCTCAGCCCCCTGCGCATTCCCATGGAGACCCACCTCTGCTTTCTGGCAGGCATCTAAACTCCTCCTCACGGCTGGATGTGTCAGGTCTTTCTTCGCGCTCGCACTATTCTGCCCATGGCAAGAAGGTGACAGGGGCATCAGGCCAGCGCTGGCTGCCAGTTCACGTCCTGAGAGACTGGCGTCAGGGGCACAGCAGTGATCAGGAGTCTTATGCAGAGTCCACAGACGGATGGTCCAGTGCTAACTGTAGCACCCTGCCACCACCCATGAGTAAGATTCCAGCCGACCGGTACCGTGCTGCAGGCGAGATCGCCTCGCAGCCTCACCGGCTCCATGCGCAGAAGGACGAGTGGGCTAAGAAGCTGTTCGGGGAGAAGAACCTACGAGAGCGTCAGCAGCAATCGAACGACTGCAGAAGAATGAAAGATTCTGAGAAAAAGGGCGGTAGATTTAAAGGCATCACTATGGGGTTTCCTCAGCGTTCCTCCGGCAGACGATCTTTTGGACGTTCCAAGCGTCTCAGTATGGCTCGTTCACTTGATGACCTTGAGTCTGCGGCAGTCTCCGATGGTGagcTGAACAGTGTGGACCTGAAAGGATGCGGCAGTGATAACAGTCTGAACAGCAATGCCAGCCTCCCTAGCGTGCAATGCCATAGACGCCACACGGAACGGCGCGTTGCATCATGGGCCGTCTGCTTCGAGCGGCTGCTACAGGATCCTGTCGGTGTCCGATATTTCTCGGAGTTTCTGAAGAAGGAGTTCAGCGAggagaacattttattttggcaaGCATGTGAATATTTCAGTCATGTTCCTGAAACAGACAAGAAACAGCTGTCCCAGAGGGCCAGAGAGATCTACAACAGCTTCCTGTCGAGTAAGGCCACCACGCCTGTCAACATTGATAGTCAGGCTCAGTTGGCTGACGACATCCTCAATGCTCCAAGGCCAGACATGTTTAAAGAGCAACAACTACAGATCTTCAACCTGATGAAGTTTGACAGTTACACACGCTTCCTAAAGTCCTACCTGTATCAAGAATGTATGCTTGCAGAGGTGGAGGGACGTCCTCTTCCAGACCCCTACCAGGTCCCAAGTAGCCCCACGTCCAAACATAGCACAAGCTCTGACCGCTCCAACCTCTCTACGCCCAAAAAGgtCCAGGACGACAAGAAGAGTAAATCGGGAAGATCACTGAATGAAGACAGCAGAGATGAACATggtgataaaaagaaaagcattttcttcTCCTGGTCCAGAAATAGAAGTTTTGGAAAAGGATCAAAGAAGAAGGAACTTGGAGACTACAGCTTTACAGGCAGTAACGGACGGAGGGAATCACAAGGCTCTTTGTCTTCTGGTGCGAGTCTGGAACTTGCCACCTCTGGTTCTGGAAAAAACGAGGGTGAGACGTCGCGTAACTCCATGGCACTGTCTGAGCGTGCCGTGCGTCACTGTAACATTAACCTTCCCGATGGCTCATGCTGCTCAGTACCCATCAGACCTGGCGTCTCCATCAGAGAGGTGCTCTTAGGATTGTGTGAGAAGCTCAGCATTAATCTGGCTGCTGTGGATCTGTTCCTAGTAGGAGGAGAAAAGCCTTTAGTGTTGGACCAGGACTGCATGACACTGTGCTCCAGAGATCTTCGGCTGGAGAAACGTACGCTATTCCGACTGGATCTGGTGCCCATAAACCGTTCGGTTGGGCTTAAAGCAAAACCCACTAAGCCTGTTACAGAAGTGTTGAGGCCAGTGGTAGCCAAATATGGCCTCAACTTAGGAGACCTGGTGGCTAGGATAAGTGGAGAGAAAGAGCCGCTGGATCTTGGACTTCCTATATCTAATCTAGATGGACTACGGGTTGTTCTAGAAGCAGGAGACCACGTTCCAGGAAAAGacaaacaaaagctGGTCTCATCTAAAAGTCACGGTCCACCTCTGTCTACGCGAAGCCAGTCTGCCACAGGGGAGGACAAAGCGGCAGGAAAGGCTTCGGCTGTGAAAACCCGGGCCCAGGTGGAAAAGCGCAAACAGAAAAAACTTAATATAGATGAAgctgaagCAGAATTCTTCGAGCTCATATCCAAAGCACAGAGCAACAGAGCTGACGACCAGCGGGGTTTGCTGAACAAATCCGACCTCGTCCTTCCTGACTTCCTGCGCCTCGACACGGAAGCAGACGGCAACCACCTCAGCTCCACTCCTGTCTCCCAAAAGACCCGGCCCCGATCCAAGGAGAACGGCTCCGCGCTCAGTGCCAGCCACCAAACGCAGAGCTTAGATTCAGCGGTGGAAGGCACGGCGCCTAGGCGTGCCCTGATGCCTCCCAATAGCGCTCTCAGAAATGCAGCGGGTCGGAATCCATCGCCGTTTAGTTCCTCGCTATCCCCGATCCCACACTCGCAAAAAGGGGGCTCGTCTGGGATAACAGACTGGAGGAGCGACGGAGGGGTGCAGGcactggaggaagaggagagcgGCACGGACCTGACATATGTCGCTGAAGGCGACATCACAAGCCCTAACAGCTCTCTCCTTCACCAGTCCCCCGTgcctctccctccctccccaGACCGACTGCACCTCCTGAGGGAGGACTCTTACCAGGACAGCTGGGCTCGATCAGGTACCTCTCCCGTGTGAACAAGCTACGCTCGCATGTTGTCCTCACCTCTCTCTGGTCCCTCCTGAAGATGTGTGTGATTTCTGAGTGCTGTGGATTTGCTGTGTTCCTTATCGTAAGCCCTGTGCCAAACCCTGGCAAAACCGCCTTCTTCCCATGTACATTTGACACCCTTTAAGCACTTTAATGAAGAATCGGAAAAGAGACTTCTACCTTCAATGCATTTGACAGTTCCCCTGAAAGTATTCTAAAACGACTAGCCACACACAATCTTGACAATCATTAACCTTcacagttttttgttgttgtttttttcactgaGAGAAACAATAGTGTTATTGTAGCCAGTCGAACTGATTTGAGGTCAGTAGTGAACTGAAGTGATCTTGCTCATCTTCTGCATATCTCTCCCCCGTGGCTGATCACATGATGGCCTTAACAGGAGCCGCAAATGACTGAACTAAACATGTGATAATTCTTTgacactaaataaaaactatatagcAGACGTGGAGTGTTTGAAGTAACAAACACCCTCGTTTACGCATGAATTTATTTGTCTGTTCAAATGATGTGAATACACAAATGGATTAAAACATGAACAAGCACAATCCGTTTTAGCACGACGGAGGCCTCGCCTTACCTTTCTTTGGTTACCAGTAGCGTGCCTTCCATGAGCCTGTCCATGAAACCTAAATATTGACAAAGAGTCTTCAGTAACTCCTCATGACCTCACATTTCTATATTTCAATCTTAAATTGAGACCTCagagcttttacatttttttttttcccatttcgCCATCGTAGTCTTACGAAAATGCAATTCAACAATGTGTAGCTACGCAGATTACTTCCTGTTTATCACCATGACATCacttccatgttttttttttaagctacaGTATCATGTTACATATGTAATTGTGTAATATAATCCTAAAAAAAGGATTAATTTATCCCTTACGAAATGTCAGTATATCTTCTTGAATGATAAAATACTAAATGTgtacatagtttctgttacagcTGTGTGATTTATTGCTATGTTGAGTTGCCAACATTGTTGAATTGTTCTCCATTCGGTTCCTTCTGACACTgaaatcattttcagttttctgtaGCAGTCTTTTTTGTAGACGACCGATATCTCTTCTCAGATTGATATTCCTGCAAACCTGTAAATagagttaaataaatgttacggGTGAGATCTTTCTCCCTTCCTCTCA

Function

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0038032 termination of G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005057 obsolete signal transducer activity, downstream of receptor molecular_function
GO:0005096 GTPase activator activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6683 lncRNA downstream 56789 19938019 ~ 19938401 (-) True G4713
TU6634 lncRNA downstream 58431 19936390 ~ 19936759 (-) True G4671
TU6573 lncRNA downstream 362937 19631098 ~ 19632253 (-) True G4615
TU6568 lncRNA downstream 383675 19608383 ~ 19611515 (-) True G4611
TU6780 lncRNA upstream 105053 20137072 ~ 20139930 (-) True si:dkey-9i23.16
XR_006250988.1 lncRNA upstream 123645 20155664 ~ 20157523 (-) True LOC122345298
TU6910 lncRNA upstream 167976 20199995 ~ 20265069 (-) True G4870
XR_006250990.1 lncRNA upstream 233266 20265285 ~ 20266183 (-) True LOC122345304
TU6996 lncRNA upstream 410933 20442952 ~ 20444794 (-) True G4924
XM_043246100.1 mRNA downstream 10226 19968859 ~ 19984964 (-) False dok7b
XM_043246091.1 mRNA downstream 10229 19966867 ~ 19984961 (-) True dok7b
XM_043245252.1 mRNA downstream 78858 19911680 ~ 19916332 (-) True adra2c
XM_043249777.1 mRNA downstream 112466 19881125 ~ 19882724 (-) True hmx1
XM_043248486.1 mRNA downstream 115539 19878191 ~ 19879651 (-) True hmx4
XM_043235665.1 mRNA upstream 1963 20033982 ~ 20064155 (-) True htt
XM_043235691.1 mRNA upstream 1963 20033982 ~ 20064154 (-) False htt
XM_043235681.1 mRNA upstream 1963 20033982 ~ 20064154 (-) False htt
XM_043235673.1 mRNA upstream 1963 20033982 ~ 20064154 (-) False htt
XM_043239288.1 mRNA upstream 81285 20113304 ~ 20120444 (-) True tmem132a
TU6528 other downstream 456044 19535972 ~ 19539146 (-) True cdk2ap2
XR_006250498.1 other downstream 2114773 17815824 ~ 17880417 (-) False znf827
XR_006251556.1 other downstream 3921270 16069177 ~ 16073920 (-) False alg11
TU5142 other downstream 4764304 15230539 ~ 15230886 (-) True G3571
TU5072 other downstream 4965570 15020642 ~ 15029620 (-) True G3515
unassigned_transcript_102 other upstream 64936 20096955 ~ 20097026 (-) True trnae-cuc_3
unassigned_transcript_104 other upstream 80731 20112750 ~ 20112821 (-) True trnam-cau
unassigned_transcript_105 other upstream 81123 20113142 ~ 20113213 (-) True trnae-cuc_4
TU6776 other upstream 105053 20137072 ~ 20139930 (-) False si:dkey-9i23.16
TU6779 other upstream 105053 20137072 ~ 20139930 (-) False si:dkey-9i23.16

Expression Profile