RNA id: XM_043243044.1


Basic Information

Item Value
RNA id XM_043243044.1
length 3912
RNA type mRNA
GC content 0.45
exon number 18
gene id si:ch211-197n1.2
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 10372924 ~ 10398831 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGCCACAAACCCTGGAGTAATATAACTTAAAGGAACACAGGCACTGCATTTCATTCAAACCATTTTAGTGACTGCATAATTACCTTCTGACActgtaggaaaaaaaactgaccaaAACAACTACTTTGAGAACTATATTCCACTTTTTATCGAACTCTAAACATTTTACCGTAAGTTTAATTTTGAGTTTAAGCCTCCTCCACTGTGTCACGTGACAGATTGTTCTTACTGCCCAAACTCCTGTGTTTTCTGATATTTGAATCCACTTCCCCATCTTTTCTCCCCCACAATCTGTTAGTTGGGTCTGTTGCCTGGCTACGTATTCTCCTTGAGCTGTTTTGAATGTtactaaaacaaagtgttaAACTTCTTTACAACACAATGGACGCTCGAGTGGGTGCCAGGCAGTAATAACACGGCTCAAATTTCAGAGCAAAGCTATATAattctttaataatatattaattctCTCTTCCTTGAAGCGGGCATATTATGCtaagaaataaacatgcaaaaaaagccTCAAAACTCTTTGGGGAATTgcttattaatgtaataatagttaaagcaagttattatttaaatgtgctaACGTTTTTTTAACGAATCGGTTTAGGTTAGAATTAATTGCCTACAcatacaaaccaaaaaaaaaaaaatgctagtaCATGGTCTTGATGCTCCTGGTCTCGTGTAGGAACATCACGCGCATTTAGATTCGCGCGTGCAATCTGCAACCTTAGGCGCGAGCGCTTGCTGTTGCTAAGGGCAACTTGGCTAGTCTTCAGTAAAACAGTAAGCAGGCAGGGTCTCTTAAAATCAATCAACACTTTTGACGTTTATTGAGCGCCCGAGTTCGACGCGTAActcatcaaattaaaatattctttcttGGCGTATAACGCACTTTGGAGAAGGGCTTCTCGAAGAGTTCCGTTCAAACTTTAAACCATCGAGTCAGGATGTCCACGGTGGCTTCTGTGCGACTCCCGGCCATCCAGCACCCTTCGTCGAGACTCGGAGACCCAGAGCTCATCTCTCTCCGGGGTTATTCCACCGACGGCGGCAGGGATCAGAGATGCTGGATGCCTCAGAAAGCAACCAGAGCTCAGTCTCCAGGCGCAGAAAGCCTGGACTCTGCTTTTCGCAGTGAGAGCAGAAGAAGCGATATCAGCTCGCTgatggaaaaaattaaaagaggGGGATTAGATATTCCAGAGGAAATACCGGAGGCAGAAGAGATCATCCAAGACCAGGATAAAGCCCGGTTACCTGTCTTCCGATACAGGGCAGGATCAGAAAATCGCTCCATAAGCAGAGTCTCTCATTCAACATATTCCAGCACTGGGCCATGGATGACAGATCAAACCGATCAGCTGGAAGATGAGCTAAAAGAACGCATTCAAAATACAGGAGCTCTGACACTCAAAATCCTGTTCAAGAATAACCACCCTGATGGCAAGCCTCTGGTCAACAGATCTGCTTTACTTGAGATCCTTACAAATTTCCTGAAGAGGCCTGTCACAGCTAAACAGCTGAAAAACCTTCTGTTTCGTCTGCACCTCTTGGACCGAGTGCTTATCAGTTTTGAGGAGTTTTATGGTGCCCTAAAAGACCCGAACGCCAATAAAAGTAACCCCGCAGGTCTTCTTACAATTCCTCAGACAATGGCCCTGCTGAGAGGACCTGCGCGCAGCAGGTTTCTGGAGAGTGTGGAGGTTTTGTGCAAGTCAGACAATCTCACTGAAAGCTGGATATCTGCCCCAGAGTTCAGGAATATTCTCAGCAGGCTCAAGCTTCACCTGAAAGATCCTGATTTTGAAAAATTGTGGAAAAGGTTGGATGTGGATGGACTTGGAGCAGTTAAACAcactatttttctaaaaaaattggGATTGAGCAGAAGAACTGAACCAAACAATGAGAGAAACGCATCTATTACTGCTAAAGCCGAGGACACTAAAGCTGCTGGTAGGACACTCTCTAAGGCGGAAGAGGAGCGTCACACGTCTATCGCCATTGAGGCATGGTTGAAGGACAGATTCAGGGAAGGAGCTCAGAGGATGAAAACTGAGTTTGATAAACTGGATCCTGTGAACAGTGGAAAGGTGAGGGGTGCAGACTTTCTGCAGGTGTTGAGGAAGTTTGACCTGCATCTGAAGAGAGAGCACCTGGGTCTGTTTTTATCTCGGTGTGGCCTGAAGATAAAAAAGGGTTGCGTACAGTACTTGAACTTTTTGCGCACCTTCCAGGACAGAAGTTCAGATGGCATTACTCATAAGATCGTATCTAATCCAAAACACAGGTTTTATTCTAATGAGAACATCAGTTGTATTTCCTCTTTAAGTGCTATAGAGGCCAAATTAACTCGCCTGTTTCAGTCAGAGTACCTCTCACTCCTCCAGACCTTTCAgAACATTGACAAGCTTAATAAAGGGTCCATTAGTAAAGAAGAATTCCGGGCTGTTATGGAGAGCAGGTTTGGCCTAGAGATTTCCGACCCTCAGTTTGAGCAGCTGTTGGACAGGCTCCCTCTTGACCGCCACGGAAATGTGCAGTACCCAATCTTCATGGCAGCCTTTGACACCAGGAAAGGAGTTCCCAGCCTCTTCCAGGCAGCCGGCCAGCCTGCCTCGATCCGTGAGGAGAAGGGCTCAGAGGACGATCGGAGTGACTACGAGCTGTGTAGTCTGGTGAAGGATTTGGTGGCGAACCGTTACAGAGATGTTCTAAGAGAGTTTGAAGAACTGGACGAGAAAAACACCAGACGTCTCACTCAGGAGGACATGTATCAGTTGCTTAAAAGGTTAGAGCTCCATCCCGAGGTAACTCGTGGAGAGGTCCGAAGGTTGTGGTCCTCTTTGTTCACTCAGCAGGATGGATCTGTGGACTTTCAACAGTTTATACGTCATTTTGGCCCGTCTCCCAAATCCTGCTGTTACCCCAATGCCAAACACAATCCCCCCAAACGTGGAGACAATGACTTCATGCGCCTCTCCAAAAGACTCAACTGTGTCTCAGATATACTGGTGGATGCTCTACGGGCCAAGGTGGAGTTGTCTGTTTCTGAGCTCTGGACTGAGTTCTCTGAAATGGATTTTTCTGGGACAGGTTTTGTTAGCAGCGATGAATTTAAAGAGATCCTTATGAGTCTCTGTGTTCATCTCAGCCAGTATGAGTGTGATCTGCTGGCCAAGAAATTTGACATCAACCACGATGGCAGTGTATCCTACACAGAATTCCTCAAGCCTTTTCTATCCCAGAGTCAAATATGGAAGCACGGATCCAATATGGCGGCTGCTCTGCAGACTCCTAGAGAAACTAAACAAGAAGCCGCTCCGGAAACATTAAGTGGCAAGATCAGAAAAAAGCTCCAGCGTAAGGCCAGGGCTATCAGCAAGGCCTGCGCCCGGCTGGATGTCTCCAGCACTGGGCTTCTGTCTGCAGCTGAGCTGGGCGCTGTGCTGCATCTGTTAGGAGTGTGTCAGAGCCAGGAAGAGCTGAGGAGTGTGTTCTCTACGCTTCACACACACCCGTCTGGACTCCTGGACTACCGCCCTCTCCTGATGGACAAGCACAGGACATCCAGTCACAGCCAGCAGACCAAGAACCAGCTCAGCCACAGGAGTCAATAGGTCAGAGGTTTAAAACACATGATGGCTACAGTGACTAGTACATTTGTAATTCAGAGCTGTTGCCGAGATAATATTTCAGCTAAACATATTTACCCTAGTGGGTTCATCCATAAATAAAGACACACAATCAATGATCAAATTATAATCGCGTATTGTATTGCTTTATATTAGATTTTGTTAGAGGCAAATTAATTGTACTTAATTGCTTTACAGCGTagtgtgtgttcatgtttcAAAGGactatataataaaattcaatgattaaaaaaatgtgtc

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3314 lncRNA downstream 65209 10307504 ~ 10307715 (-) True G2293
TU3313 lncRNA downstream 65686 10306970 ~ 10307238 (-) True G2292
TU3305 lncRNA downstream 116037 10256650 ~ 10256887 (-) True G2286
TU3145 lncRNA downstream 580457 9787314 ~ 9792467 (-) True G2174
TU3099 lncRNA downstream 679486 9679896 ~ 9693438 (-) True G2138
TU3330 lncRNA upstream 483 10399314 ~ 10401686 (-) False G2302
TU3336 lncRNA upstream 483 10399314 ~ 10401686 (-) False G2302
TU3381 lncRNA upstream 279344 10678175 ~ 10678522 (-) True G2327
TU3382 lncRNA upstream 279979 10678810 ~ 10679017 (-) True G2328
TU3454 lncRNA upstream 425964 10824795 ~ 10825752 (-) True G2369
XM_043243049.1 mRNA downstream 11236 10341828 ~ 10361688 (-) False acsl1a
XM_043243048.1 mRNA downstream 17450 10341828 ~ 10355474 (-) True acsl1a
XM_043243047.1 mRNA downstream 17451 10341828 ~ 10355473 (-) False acsl1a
XM_043246382.1 mRNA downstream 474569 9893021 ~ 9898355 (-) True frg1
XM_043246295.1 mRNA downstream 474570 9893889 ~ 9898354 (-) False frg1
XM_043243082.1 mRNA upstream 3710 10402541 ~ 10408372 (-) False cfap97
XM_043243071.1 mRNA upstream 3710 10402541 ~ 10408363 (-) False cfap97
XM_043243062.1 mRNA upstream 3710 10402541 ~ 10408363 (-) True cfap97
XM_043243092.1 mRNA upstream 13059 10411890 ~ 10416197 (-) True ufsp2
XM_043236718.1 mRNA upstream 17929 10416760 ~ 10417566 (-) True si:dkey-256e7.8
TU2978 other downstream 1574569 8795071 ~ 8798355 (-) False LOC122351550
TU2970 other downstream 1590337 8779218 ~ 8782587 (-) False LOC122351550
TU2800 other downstream 1765129 8603300 ~ 8607795 (-) True G1926
XR_006250550.1 other downstream 3077245 7218986 ~ 7295679 (-) False dmd
XR_006250549.1 other downstream 3077291 7205584 ~ 7295633 (-) False dmd
TU3335 other upstream 356 10399187 ~ 10401686 (-) True G2302
TU3397 other upstream 343091 10741922 ~ 10745896 (-) False LOC122347930
TU3398 other upstream 358740 10757571 ~ 10760491 (-) False LOC122347930
XR_006251247.1 other upstream 411479 10810310 ~ 10814075 (-) False LOC122347618
TU3478 other upstream 555044 10953875 ~ 10981366 (-) True G2382

Expression Profile