RNA id: XM_043243062.1


Basic Information

Item Value
RNA id XM_043243062.1
length 2272
RNA type mRNA
GC content 0.45
exon number 5
gene id cfap97
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 10402541 ~ 10408372 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGTCACCTAGTTACAGTAGCTAACGAGCCCACATACTCTTCTGTGTAGCGAGGTGGGCAGCTGAGAAAGCCTGTTTTAGCTCTTTTCGTCATGATTATCGCCTTTCTGAAGACCATTTGGAGATAAACAGCGAAGTAAAATGAAGTACGTCCGCTCGTTGTGTTGGAGGTTTATCCCGACAGTGTCGCGGTCGCGCGTGTTTTGATGTGAATGTCAAGAGGTGGGCACTTCTAACGTTAACTGGCTGTGTGACTTCGAGCTGGCGTGCGTGAGTTTTGCGTTTGTGCACAGGTTCCGCTGAATGAGGGCATATTTGGAAGACACACTTCAGAAATGTACAGCCCCAAAGAGCTAGAAGGAGAAGTTGACCACTCATTCTTTGACAGTGACTGTGACGCTAGTGCACTTGCTTCTGAAGATGTACAGCCTAATAAACAGAAGGTCATGGAAAGACAAGATGAAAAAACAGGAGGTGTTTCAATAGATCAGATAGGAAGAGGTGCTCAAAGTGTAAGGAATAGTAAAGATGGAGCTAGATTTGAGGATGATTTAAAGCAGGGCAGCAGGGGCCAAAACGAAgagacagaattaaaaaaagagcgaCAAAGTAGTGAAGGATTTTTCAAAGGTTCTTTATCACTTCCAAGTGCCAAAAGCTCAGAGACTGTGaacaacagccaatcagatgaaGGATCTAGTGTGCATTCATACTCATCGGATGAGGAAAGAGAGCTGGATTTTAAACTCAGGAAAACCAATGTTAATGTAACCAgcgacgacgacgacgatggATACCATCGTAGTGACGATGAAAGTGAGGAGGATAGGAGATCGCCGGTCACACGGTCAACAAAACATAAGGGATTGTCCCACGGAACACCTAAAAAATCTGCTGGAAAATTCCACAAGCTGAGCCGTAGCCGGTCATCATCATCCGACCCCGAGTCCTCCCAAAGTAGTGAAGAAAGAAGCTCTTTTCAATCTCAGAAATCATCTGTAAAACATCGGCGGGTCGGTTCAGCTTACCAGAAAGAACGACCAAGAGAAACAGCGGAATCCGAGGACACAGTTACTGATGTGACCCCTCTCTCCACACCAAATGTTAGTCCTTCCCAGTCAAGTGATGTGGCTCTTCCCTCTGAACCCGTGGCAGCAGATGTTCAACAGCGACAACAGCCCAGCGTTACTGAGAAGATGCTAGCGAATGATATTTCGGTGGGTCAGGACAGTTTAAGTTCAGAAGGAGAGGGTGGACCAGtgtttttaaaagtagaGAAGCAGTTAAACAGGGTACTTATGGTCTCCAGCCCTGGCAGTGTTAGCAGCAGCCGTAAGAACTATTCCTTCACGAATGAAGAGGTACGGCAGATCGACCGGGAGAACCAGCGGCTGTTACATGAACTGTCCCGGTCATCGGCGCGTTCCCGCAGCGGCAGCTCTGCCTGCTctaaaagcagcagcagcagtcgcAGGAGTAGTGCGCCACCCATACGCCTTTACCACAGCGCCCTCAACAGACAACGAGAGCAAGAGCGCATTCAAAAGGAAAACATGGCATTCCTGAAGCGTCTAGAATCTGTGAAGCCCACTCCTGGCATGACCCGTGATGAACAGCTAGCTGATTACCAGCAGCAGTGCCGATACCTGGGAACACACAACACCGCTATCCCACCAGTCAAACTCAAGTCCAGCAAGACATCTGGAAGGGCTTCGAGACCTGGTAGCAGTCCTCACAAATCTAGATCGGAATCCGCTAAACTCAGAACTACACCACGGCCTGCATGGTCCTGATTCTCATATTTTaccttctctttctctgcccTCAACACTTTCTCTTACACGGCTGTAAGTAAAATACAGACTGCAGATCACAACACAAAATCTTCTGGataaatgttgcaaaaaagGCTTGAGCTCATGGTAATTTGTCCAGGTGTGGAgtgatataaatgaaaatacttgTTAGAGAGTAACCACAGCTAAACATTTGCTACATTTATTCGACAGTGTGCAGCTTTTTTCtgtatgtaatatttagaaACGGATTTAGACTCAATGAATTCAGTCAACACCGATCGGGACCATAAATTGTGACAATCCACTTTCTGAAATATTAAGAAGTAAACTAGTGCCTATATGTGACAGAcaactgtatgtatttttaagcgGTGTATTGTAAAGACATTGCAGCAATTTTCAGAATAATTAATTACGTGACACATCTGTCAGAAACTAAATCTCATGtgaaataaagctttatttgttatggtta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3333 lncRNA downstream 855 10357181 ~ 10401686 (-) False G2302
TU3330 lncRNA downstream 855 10399314 ~ 10401686 (-) False G2302
TU3336 lncRNA downstream 855 10399314 ~ 10401686 (-) False G2302
TU3314 lncRNA downstream 94826 10307504 ~ 10307715 (-) True G2293
TU3313 lncRNA downstream 95303 10306970 ~ 10307238 (-) True G2292
TU3381 lncRNA upstream 269812 10678175 ~ 10678522 (-) True G2327
TU3382 lncRNA upstream 270447 10678810 ~ 10679017 (-) True G2328
TU3454 lncRNA upstream 416432 10824795 ~ 10825752 (-) True G2369
TU3460 lncRNA upstream 418179 10826542 ~ 10826779 (-) True G2374
TU3464 lncRNA upstream 429605 10837968 ~ 10839302 (-) False G2377
XM_043243046.1 mRNA downstream 3710 10372924 ~ 10398831 (-) False si:ch211-197n1.2
XM_043243045.1 mRNA downstream 3710 10372924 ~ 10398831 (-) False si:ch211-197n1.2
XM_043243044.1 mRNA downstream 3710 10372924 ~ 10398831 (-) True si:ch211-197n1.2
XM_043243048.1 mRNA downstream 47067 10341828 ~ 10355474 (-) True acsl1a
XM_043243092.1 mRNA upstream 3527 10411890 ~ 10416197 (-) True ufsp2
XM_043236718.1 mRNA upstream 8397 10416760 ~ 10417566 (-) True si:dkey-256e7.8
XM_043243124.1 mRNA upstream 10269 10418632 ~ 10423541 (-) True pdlim3a
XM_043242992.1 mRNA upstream 17402 10425765 ~ 10471947 (-) True sorbs2a
XM_043243002.1 mRNA upstream 17402 10425765 ~ 10471937 (-) False sorbs2a
TU3335 other downstream 855 10399187 ~ 10401686 (-) True G2302
TU2978 other downstream 1604186 8795071 ~ 8798355 (-) False LOC122351550
TU2970 other downstream 1619954 8779218 ~ 8782587 (-) False LOC122351550
TU2800 other downstream 1794746 8603300 ~ 8607795 (-) True G1926
XR_006250550.1 other downstream 3106862 7218986 ~ 7295679 (-) False dmd
TU3397 other upstream 333559 10741922 ~ 10745896 (-) False LOC122347930
TU3398 other upstream 349208 10757571 ~ 10760491 (-) False LOC122347930
XR_006251247.1 other upstream 401947 10810310 ~ 10814075 (-) False LOC122347618
TU3478 other upstream 545512 10953875 ~ 10981366 (-) True G2382
TU3498 other upstream 644791 11053154 ~ 11053941 (-) True G2401

Expression Profile