RNA id: XM_043243092.1


Basic Information

Item Value
RNA id XM_043243092.1
length 1786
RNA type mRNA
GC content 0.45
exon number 12
gene id ufsp2
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 10411890 ~ 10416197 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAGAGACTGCTTTTCCTGTGAAACGGAGTCAACTTCCTCGAGGAAGAAGAGGGCGTGTTATGATGCGTCATCAAAGATGTCAGCCTTCTGGTGAATTTGATCATTGATCGAGGGAATTAAAATGGTTCATTCAGAAGAGTGCGACATTATATTCCGATTGAGAGGAATCTTGGAGTTTGCTTGCCAGCTTGACAGTCCTAATGGTGCACAAAGTCAGGGCACAATATCAAAAAGTTTCCAGGGTCTCCGATCCAAAGTATCATCACAAAGTATTGTTTTAACTGTCTGTAATAGTCCATTATTGATATGGCCTAGCGCTGGTTTCCAGTCAAACGTGGAAAGTTTGACAGAAGCATCATCATGTGGAGAGATTCTGCAGTATTTGGAGTCAAGTGATAGTGGGAGCAAAAAGTcatcaaaaaagaaagataagaaaACATCAGGACCTACTGTAGTGAATATGAAGCTGTTGTTTGAGGTCACAGAACCTGCTGGGAATGAAGGTCCTAGTCTGATCCAAGTGAGCACACAGCAGCATTGTGTGAAGATGCCACTGCCTTTAGACTGTGTTCTTTCTGTGACCACTGATGAGAGTCTGGCAACTGCGTGTACAGGGCTGGTGGAGGCATTAAATAAGCAGTTATCAGACATGGAAGAGGTGGTTCTACAATACAGGAAGGGCTCCTCTTTCCTGGTGCCACGGCCATTTCACTTTAAACTGCCTGAACCAGCTGGATTCACTACTGTAATTTACCCTGCTGGAGTATCAGACAGCCAGCTACAGGCCACCAGAGAGGATCTCCACAGGAGGTTTAAGTTGCCAAGTGACAGGCCATACCTGAGACGTGCCAATGCCTTTCATTTCCCCGATGCACCCTACAAAGACGGTTACCTCCGCAATCCTCACATACACCTGAACCCACCCAACATTGAGGATGCTATGctGTATCTGGTGCAGGGTGTGTACAGTTATCATCACTACATGCAGGATCGTGTGGATGATGATGGCTGGGGATGTGCTTATCGTTCCCTTCAGACTATCTGCTCCTGGTTTCAGCAGCAAGGATATGTGGAGACAGCTGTGCCCACACACACGCAAATCCAGCAGgctcTTGTGGATGTTGGTGATAAAGAGCCACGATTTGTGGGTTCACGTCAGTGGATTGGCTCTATCGAAGTCCAGGCTGTCCTTAACCAGCTGCTGGGGGTCACCTCAAAGATCATGTTTGTCAGTCAAGGATCAGAGCTGGCAACCAAGGGCAGAGAGCTGGCCAGCCACTTTCAGACTGAAGGAACTCCTGTCATGATTGGTGGTGGAGTACTTGCACACACTATTTTAGGTGTAGCATGGAGCGAGAACAGTGGACAAATACGCTTTCTTATCTTGGACCCTCACTATACCGGTGGAGAGGACCTGCAGACCATCACTGATAAAggcTGGTGTGGATGGAAAGGACCAGAGTTCTGGGATCAAAATGCTTATTACAACCTCTGCCTTCCCCAGAGACCCAAGACCATCTGAGACTCGTGCATGACActtattcacttttattcataCTCCAAGTTCATGGATACACAGGAAGTCTCATTGTTTCAAGGAGTGCAAACGGACAAAGTGCTTTATTGCTTATTGTCCttacaatgttttaaatgtccTTGTGTATTTTAACATCCGTTTTCAGTCACGCTAAAGGTTACTTGATTTTCAGTCAGGCTGCAAATCGAATAAGATAAGGCTCcttgctaataaataaaaagaaacagcagttaaaatatcttcctaaaa

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005634 nucleus cellular_component
GO:0019783 ubiquitin-like protein-specific protease activity molecular_function

KEGG:

id description
K01376 UFSP2; Ufm1-specific protease 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3333 lncRNA downstream 10204 10357181 ~ 10401686 (-) False G2302
TU3330 lncRNA downstream 10204 10399314 ~ 10401686 (-) False G2302
TU3336 lncRNA downstream 10204 10399314 ~ 10401686 (-) False G2302
TU3314 lncRNA downstream 104175 10307504 ~ 10307715 (-) True G2293
TU3313 lncRNA downstream 104652 10306970 ~ 10307238 (-) True G2292
TU3381 lncRNA upstream 261978 10678175 ~ 10678522 (-) True G2327
TU3382 lncRNA upstream 262613 10678810 ~ 10679017 (-) True G2328
TU3454 lncRNA upstream 408598 10824795 ~ 10825752 (-) True G2369
TU3460 lncRNA upstream 410345 10826542 ~ 10826779 (-) True G2374
TU3464 lncRNA upstream 421771 10837968 ~ 10839302 (-) False G2377
XM_043243082.1 mRNA downstream 3518 10402541 ~ 10408372 (-) False cfap97
XM_043243071.1 mRNA downstream 3527 10402541 ~ 10408363 (-) False cfap97
XM_043243062.1 mRNA downstream 3527 10402541 ~ 10408363 (-) True cfap97
XM_043243046.1 mRNA downstream 13059 10372924 ~ 10398831 (-) False si:ch211-197n1.2
XM_043243045.1 mRNA downstream 13059 10372924 ~ 10398831 (-) False si:ch211-197n1.2
XM_043236718.1 mRNA upstream 563 10416760 ~ 10417566 (-) True si:dkey-256e7.8
XM_043243124.1 mRNA upstream 2435 10418632 ~ 10423541 (-) True pdlim3a
XM_043242992.1 mRNA upstream 9568 10425765 ~ 10471947 (-) True sorbs2a
XM_043243002.1 mRNA upstream 9568 10425765 ~ 10471937 (-) False sorbs2a
XM_043243020.1 mRNA upstream 9568 10425765 ~ 10471936 (-) False sorbs2a
TU3335 other downstream 10204 10399187 ~ 10401686 (-) True G2302
TU2978 other downstream 1613535 8795071 ~ 8798355 (-) False LOC122351550
TU2970 other downstream 1629303 8779218 ~ 8782587 (-) False LOC122351550
TU2800 other downstream 1804095 8603300 ~ 8607795 (-) True G1926
XR_006250550.1 other downstream 3116211 7218986 ~ 7295679 (-) False dmd
TU3397 other upstream 325725 10741922 ~ 10745896 (-) False LOC122347930
TU3398 other upstream 341374 10757571 ~ 10760491 (-) False LOC122347930
XR_006251247.1 other upstream 394113 10810310 ~ 10814075 (-) False LOC122347618
TU3478 other upstream 537678 10953875 ~ 10981366 (-) True G2382
TU3498 other upstream 636957 11053154 ~ 11053941 (-) True G2401

Expression Profile