RNA id: XR_006251260.1


Basic Information

Item Value
RNA id XR_006251260.1
length 2872
RNA type transcript
GC content 0.50
exon number 20
gene id dclk2a
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 18247250 ~ 18284644 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAGGTGTGTGGCGAGTGTTGGCCTGATTGAGTGCCAGTGGAGGGATGAAGAGAGCCGTGGACGCTCACGCGTGTCCAGCATGCGCACGTACATCTCTGCGCGTCTCATCTCATCATGACCGGGGCTCACCTCAACCACAGCGTCCGTCCTTGAAGTGAGTTCTTGGATTTGTGGACTACCGGGACTTTCACAAGCTTTTATTTCtcgtaatatatttatatatttaacaactTGTTTATATAGCTGTATAAAAAGTTGAACAGGACAGCCTTCGGTCTGTTATTTGACTGGTTTCTAACAGACAATGCGTATGATTTGCTGAAACTCCCAAGAAAGAAGAAATAACACGAACAACAACCGGCGCAAAAACAAGCTCGTTTATTCAAGCGTCCGCGCTTTGACTTCCAGGAAATAAACATGTCTAGCAGAAGCATCGAGTGGGAGCATTTCGAGGAGCGCGAGAAGAGTCACCGGTCCCCGCGGGGCAGCGGCGCTTCTCATTCCGGCTCGCGCGGTAACGGGCTCGTGCCCAGTCCCGCTCACAGCGCGCACTGTAGTTTTTACCGCACGCGCACACTGCAGTCGCTCACCTCCGAAAGGAAAGCCAAAAAAGTTCGCTTCTATCGGAACGGCGATAAGTACTTCAAGGGCTTGGTGTACGCGGTGTCCGGCGACCGCTTCAGGTCCTTCGACGCGCTGCTGATGGAGCTCACGCGCTCCCTCTCGGACAATGTGAATTTACCGCAAGGAGTCCGGAACATCTACGCTATGGAAGGGGGGAAGAAGATCACCAGCTTGGATGAGTTACAAGAAGGTGAAAGCTATGTGTGTGCTTCCAATGAACCATTCCGTAAAGTGGACTACACCAAGAATGTCAATCCCAACTGGTCAGTCAATGTGAAGACAGGCACATCTCGCTCTCTGCCATCCCTTATCACCTCAAAGAACGAGCTGAGAGAACGAGAGAGCAAAGACTTCATCAAACCCAAGCTGGTGACGGTCATCAGGAGTGGTGTCAAACCCCGTAAAGCTGTCCGGATTCTCTTGAATAAGAAGACGGCTCACTCTTTTGAGCAGGTGCTCACAGACATCACTGATGCCATTAAACTGGATTCTGGGGCTGTGAAAAGACTCTATACTCTGGAGGGCAAACAAATTACATGCTTGCAAGACTTTTTCGGTGACGATGACGTGTTCATCGCGTGTGGGCCTGAGAAGTACCGTTACGCACAGGACGATTTTGTGTTGGATCACAGTGGTAAGGCTTCCACAGCCTTTATAACCGAATGTCAGGTCCTCAAGTCCTCGTATTCTTCTCGCTCTGCTCCCCCGGTGAGGTACGCTGGTAGTAAGAGTCCAGGATCCACGCGCCGCAGCAAATCCCCCGGATCTGTGAGAAAAACAGCAGGGCACTTCTCTACAAATAGCCAGTCTCCAATCAAATCACCAAaattaaagcaaaagtaTTGCTACCGTACCTTTAAGACTTCTAAAGTAAATGGAGTCCCGAACAGTCAAATCACTACCCCCAAATCCGCCAAATCCTCCAGTTCCTCCCCGACCAGCCCCCGCAGCATGCGCAACTTCAAGTTTAGTTGCAACAAGCGGATGGGAGTCCCCCTCCGTCTCTCTGTACAGATTCCAGGACATCACTCCTCCGCAACCAACGTGAACGGCTCCTCTGAGACTCCCCAACAACACAACAACAGTGTGAGCCCTGAAGTTAACGGAAACAGGAACCTTGCTGCTTCCACAATTATGGACAAGTACAAAATTGGCAAAGTTATAGGTGATGGGAACTTCGCTGTGGTAAAGGAGTGTGTCGAACGATCCACTGGAAAAGAGTTTGCACTGAAGATCattgataaaaacaaatgcagaggCAAAGAGCACCTGATCGAGAGTGAGGTGGCAGTGTTGAGGCGTGTGAAGCATCCTAATATCATCATGCTGATTGAGGAGGTGGATACACCCACTGAGCTCTATCTAGTCATGGAACTTGTGAAGGGTGGAGATCTGTTTGATGCAATCACCTCCTCAACAAAATACACTGAAAGAGATGCTAGTGTTATGGTATTCAACCTCGCGGCAGCTCTCAAATACCTGCACAGAATGTGTATCGTCCATCGAGACATCAAACCCGAGAATCTGCTGGTGTGTGAGTATCCTAATGGTACAAAGTCTTTAAAGCTGGGTGATTTTGGACTGGCCACAGTGGTTGAAGGGCCCCTGTACACTGTTTGTGGGACACCCACTTATGTTGCCCCAGAAATCATAGCAGAGTCAGGATACGGGCTAAAGGTGGACATCTGGGCAGCTGGAGTAATTACCTACATCCTCCTATGTGGCTTTCCACCTTTCCGCAGTGAGAATAATCTCCAGGAGGACCTATTTGATCAGATCCTGTTGGGCCGTTTAGATTTCCCATCACCCTTTTGGGATAATATAACAGATTCCGCTAAAGAGCTGATTGGTCGCATGCTGCAGGTGAATGTGGAGGCCAGATACACAGCGGAGGATGTGCTGTCTCACCCCTGGGTCACggtaaatGAGGATGCTGCAATGGAAAACAATATGAAGATGGAGGTGGCAGGTAAActcaaaaagcactttaactCTGTGCAGAAACAGAGCAACACTTCCCCTGGAGTCTCAGTTATTGtgTTTGAACTGTAAGGGCAGGGCTGTACCTACACCCCTTCCTTGCTCTCCCAAGACCCGAAGATGTCTGCCACTGGATATTGGAACACAGCTCTAGATAAGGAAACCATCCAGCTTTCTCGCCGCCATCAGGACCGCAGCCCCCCTCCTCCGGGAAAGAGCCCTTCCTCCACCCACCCAGAGAAACGACGCTCCCATAAGGGACGTTCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5942 lncRNA upstream 32166 18213305 ~ 18215084 (+) True G4166
TU5832 lncRNA upstream 348706 17896588 ~ 17898544 (+) False lsm6
TU5873 lncRNA upstream 500151 17745851 ~ 17747099 (+) True G4105
TU5867 lncRNA upstream 599788 17644218 ~ 17647462 (+) True G4099
TU5856 lncRNA upstream 640047 17583917 ~ 17607203 (+) False gab1
TU6140 lncRNA downstream 27173 18309934 ~ 18311341 (+) True G4296
TU6182 lncRNA downstream 315595 18598356 ~ 18599659 (+) True G4331
XR_006250297.1 lncRNA downstream 411408 18694169 ~ 18717089 (+) True LOC122340556
TU6214 lncRNA downstream 411422 18694183 ~ 18694573 (+) False LOC122340556
TU6197 lncRNA downstream 423448 18706209 ~ 18708429 (+) True G4345
XM_043231600.1 mRNA upstream 99727 18101980 ~ 18147523 (+) True arhgap10
XM_043231680.1 mRNA upstream 99727 18101984 ~ 18147523 (+) False arhgap10
XM_043231757.1 mRNA upstream 99727 18113447 ~ 18147523 (+) False arhgap10
XM_043231862.1 mRNA upstream 152755 18086895 ~ 18094495 (+) True tmem184c
XM_043236361.1 mRNA upstream 164694 18071025 ~ 18082556 (+) True ednraa
XM_043237214.1 mRNA downstream 3029 18285790 ~ 18304696 (+) True fam193a
XM_043237225.1 mRNA downstream 3029 18285790 ~ 18304696 (+) False fam193a
XM_043237234.1 mRNA downstream 3029 18285790 ~ 18304696 (+) False fam193a
XM_043237260.1 mRNA downstream 22010 18304771 ~ 18326861 (+) True sparcl1
XM_043237245.1 mRNA downstream 37020 18319781 ~ 18326861 (+) False sparcl1
XR_006251846.1 other upstream 638409 17573121 ~ 17608841 (+) False gab1
TU5228 other upstream 2593869 15653093 ~ 15653381 (+) True G3647
TU5171 other upstream 2748570 15478098 ~ 15498680 (+) True G3599
TU4849 other upstream 3455462 14725072 ~ 14791788 (+) False G3380
unassigned_transcript_101 other downstream 295989 18578750 ~ 18578831 (+) True trnas-aga
TU6436 other downstream 1238323 19521084 ~ 19522399 (+) True G4528
unassigned_transcript_103 other downstream 1829681 20112442 ~ 20112514 (+) True trnak-cuu
TU7127 other downstream 3038704 21321465 ~ 21361275 (+) False LOC122348864
TU7152 other downstream 3308116 21590877 ~ 21620580 (+) False rnf24

Expression Profile