RNA id: XM_043243505.1


Basic Information

Item Value
RNA id XM_043243505.1
length 6798
RNA type mRNA
GC content 0.50
exon number 22
gene id adgrl3.1
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 12993244 ~ 13084503 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ccctcccACCCTCCATCCTTGAATCAAGCATCACTTTGCTTCCAAATTGGCTTGTCATTTTCTCTCGGCGCTCGTCCCCTAGCTGTCGGTTCGCGCGGACGATCTAGCGATGGACTGGCTCTGATCTCGCGGACTGTGCCATCGCTGGAGACGCTCTGCGCATTTTCCTCTcattccagaaaaaaaaaaaaactgatcggGATACAACACAGGGCTCTGATATCCCCCGTGTCCACCATAGATCCGTTGGGTTTGGGGGGACAAGGGATACTCGATATATCCTGCTCCTCTCCGCGCTTCTTCGGGAGGCTTCGAGCCTCGCAAAGGCGCATCTGGCGACCGAAGATCAAAACATCATCTGCGTGTTTTATTCACACACGGACGCACTGTCACGGGAATTAAGATCACACAGCCCGATGCTGTCGAACACGTCCGGAGCTGACTATTCTTCCAGCGCTTTGTAAGATGCGGTGTGCGCGTCAGAGAGCAGCTCCATGGCTAATGTGAGACGCATCTTCAGCGAGTCTGCGCAGAGGTCATCAGGGTCATCGGCGGTCATGTGGTCCACACGCCTACTTTTCTTCTTCGCCCTCTTCACACCCGTCACGCTCGtgttaagTCGTGCTCCAGTGCCGATGGCTGTGGTGCGTCGAGAGCTGTCATGTGAGGGTTATCCTATCGAGCTGCGCTGCCCGGGCACCGATGTCATTATGATCGAGAGCGCCAATTATGGGCGCACAGATGACAAGATCTGTGACTCGGACCCCGCTCAAATGGAGAACACTCGCTGCTATCTGCCTGATGCCTACAAGATTATGGGCCTCAGgtgTAACAACCGAACTCAGTGTGCAGTCGTTGCTGGCCCTGATGTTTTTCCTGACCCTTGTCCTGGAACGTACAAATACCTTGAGGTTCAGTACGAATGTGTGCCATACAAAGTGGAACAGAGAGTCTTTCTCTGTCCAGGTGTATTGAGAGGTGTGTACCAGAGTGAACACCTCTTTGAATCAGACCACCAGTCTGGATCATGGTGTAAAGACCCCCTACAGTCATCCAACAAAATCTACTATATGCCCTGGACTCCATATCGCACAGATACACTGACTGAGTACTCATCAAAGGAGGACTTTATTGCAGGTCGGCCCACCACCACATACAAACTACCCCATCGTGTGGACGGCACCGGGTTTGTGGTGTACGACGGCGCGCTTTTCTTCAACAAGGAGCGTACACGCAACATTGTTAAATTTGACCTGCGAACTCGTATCAAGAGTGGTGAGGCGATTATTGCTAACGCTAACTACCACGACACCTCGCCGTATCGCTGGGGTGGAAAATCTGACATCGATCTGGCAGTGGATGAAAATGGACTGTGGGTAATTTATGCCACCGAACAGAACAATGGACGAATTGTGGTCAGTCAGCTCAACCCATACACACTGCGGGTGGAGGGATCATGGGATACAACGTACGATAAGCGATCGGCCTCCAATGCCTTTATGATCTGTGGAATCCTGTACGTAGTGAAGAGCGTTTACGAAGATGATGATAATGAAGCGCTGGGGAATAAAATCGACTACATGTACAACACTGAGAAGAGTCGTGAAACGCACCTCAGCATTCCATTCCCAAATTCCTACCAATATATCGCAGCTGTGGACTACAACCCCCGAGACAATTTGCTGTACGTGTGGAACAACTACCATGTTGTCATATATTCTCTCGACTTTGGGAACAATGACAACAGATTGGGCTTTGATCCTCCTTCTTCAGTCTTGCTTCCTGATGCTCTTCCTCCAGTACGCAGCTCCACGACTCCTCCTCGTCCATACACGGCTACGCTCCGCCCCTCTCTCACTACTACCACGACAACCACCCAGGCTCCGCCTCGCCACCATAACAACATCCTCCCAGAAGCCCTGACACGGTCGCCTCCCTCCCTGCAGACTCCAGTCGCTGTTGACTATTGTGCCCCACGTCTCACTGCTGAAATCTCCTGGCCACGGACTCACCAGGGACAGGTTGCTAAGCAACCGTGCCCACCTGGCACCATAGgtgTAGCCACGTTTAATTGTTTGCTCGGCTACTGGGATCCGAAGGGACCAGATCTGAGCAACTGCACCTCACCGTGGACCAATCACATCACTCAAAGAATGAGATCTGGAGAAACCGCTGCTATAGTAGCACGGGAGTTGGCTGAACAGACGAAGGGAGAGCTGAGACCCGGAGATGTTCCTTCCACAGTCAAAGCCATGGCACAACTGGTGGAGCTGCTGGACGTACAGCTCCGAAATCTCACCCCGGGGGGCAAAGACACAGCGGCACGTAGCTTAAACAAGCTCCAGAAGAGAGAGCGCTCGTGTCGTTTCTTCATACAGGCCATGGTGGAAACGGTGAACAACCTTCTGCAGATGCGATCCCAAGCGGCGTGGAGGGAGCTGTCTGTGGCCGAGCAGCTGCGATGCGCAACCATGTTGTTAGATACGGTGGAGACGGGCGCCTTCATGCTCGCAGACAACCTCCTCAAAACCGACACCATACAGGAGAGCACCGACAACATACAACTGGAGGTGGCACGTCTAAGTACGGATGTTAATCTGGCCGATCTAAGCTTCCCTCAATCTGGGCAAACCGGCAACTCCATTCATCTCTCCTCCAACACTCTCAAACAGCAAGGACGCAATGGTGAGATCCGCATGGCGCTTGTTCTTTACAAGAACCTCGGTCAATACCTGTCCACGGAGAACGCTAGCGTGCGTCTGGGCAGTGAAGCTGCCTATCCAAACTATTCCCTGATAGTCAACTCACCTGTTATTACAGCAGCTATCAATAAAGACAGTAACAAGGTCTACCTGTCCGAACCGGTGGTCTTCACAGTCAAACACATTCAGCAGTCGGAAGAGAACTTTAATCCGAACTGCTCTTTTTGGAGTTACTCCAAACGCACCATGACAGGATATTGGTCCACTCAGGATTGCAGACTACTAGGCACCAACCGCACtcacacttcctgttcctgcACACACCTCACTAATTTTGCGGTGCTTATGGCTCACGTGGAGGTCAAGAAAGCGGGCCAGGTGCACGAGCTGCTGTTGGACGTCATAACGTGGGTGGGGATCCTGCTGTCTCTGGTCTGTCTGCTCATCTGCATCTTCACCTTCTGTTTCTTCCGCGGTCTCCAAAGCGACAGGAACACCATCCACAAGAACCTGTGCATCTCCCTCTTTATCGCCGAAACACTCTTCCTCACAGGAATCAACCGCGCAGACCAGCCCATCGTCTGCGCTGTGTTTGCGGCTCTGCTGCATTTCTTCTTCTTGGCTGCGTTTACATGGATGTTTCTGGAAGGCGTGCAGCTGTACATCATGCTGGTGGAAGTCTTCGAGAGCGAGTACTCGCGCACCAAGTACTTCTATCTCACTGGATACGGAGTGCCTGCTGTTATAGTGGCTGTGTCTGCCGCCGTGGACTATCGCAGCTATGGAACCGAAAGAGTGTGCTGGCTAAGGTTGGATACTTACTTTATCTGGAGTTTCATTGGGCCTGCTACTCTCATCATCATGCTAAATGTTATTTTCCTGGGCATTGCGCTATATAAGATGTTTCACCACACAGCGATTCTCAAGCCTGACTCCGGTTGCCTGGACAACATCAAgtCCTGGGTTATAGGTGCCATAGCTCTGCTGTGTCTGCTGGGGTTGACCTGGGCATTTGGGCTGATGTATATCAATGAGAGTACAGTCATCATGGCCTACCTCTTCACCATCTTTAACTCGCTGCAGGGAATGTTCATCTTCATATTTCACTGCATCCTGCAGAAGAAGGTGCGTAAGGAATATGGCCGATGTCTCCGGACACACTGCTGCAGCGGGAAGAGTGTGGAGTCAACCATCTCCACTTCAACAAAGACCAGCACAGCCCGCACACCTGGACGCTACTCCACCAACTcgcagAGTCGTATTCGGAGGATGTGGAACGACACCGTCAGGAAGCAGTCAGAGTCATCTTTCATCACCGCTGATATGAACAGCTCAGCGACTCTCAACAGagAAGGCATTCTCAACAACGCACGGGACTCCAGTGTTATGGATACGCTGCCACTTAATGGTAATCATGGCAACAGCTACGGTGTGGCAGCAGGCGATTACCTTACCTACAGTTCTCGTGGCAGCGAGCCGCCCACTACGCTTGAGAAGAAGATACTGAAAGAGCTGACGGCAAACTACGCTCCGTCGTACCTCAACACCCAGGAGCGACAGGGAAAAGCCCACCAGGGCACCTTGACCAATAAACTCAACAACCACCTGGCCAACGGAGGGGTCGCGGGGTCATCATCCATCGCCAAAGACGACGTCATGGTGCTCGACAACCCCGGAGCTTTTCACCGACACGACGACGGGGGCGGGCTAAGTCTGGAGCTCATTAGGGAGGAGTCGCAAGCACCGCTCCTCCCACCGAGACCGCCCCCTCCGGAGAACCACGCCCCCTTGCACACGTTTTCAGCCCACCGACGCCTGCCGCAGGAGAACAGCGAGAGCTTCTTCCCGCTGCTCCCCAacgacacgcacacacactcctcccacacacacactccccgCGCGCATACGCACTCCCCCCTCAGAGACTCGCTCTATACCAGCATGCCCACGCTCACTGACCTCCCGCATGGCACTGACGACCTCATCAATGGTCTGCATGATGACGAAGacgatgaggatgatgatggcgAGGAAGAAGAAGGCAGCGAACTTCACCTGGCCAACGGTAAAGGGGTCGTAATGGAGGCGGACGACGTATACTACAAGAGCATGCCGAACCTGGGCTCCAGGAACCACATACAGGAACTAGAGAGCTATTACCAGATGGGACGCGGAGGCAGCGACGGTTTCATCGCCCCACCTGAGAAAGAAGACTCGTCGCCTGAAGAACAGCCACCAGACCCCTCACAGCTAGTCACCAGCCTATAGACAccgacgcacacacacagagtgtgtgtgtatgtgtgtgtgtgtgtgagtgagacaCAATGCACAAGGCATGGGATACACTACCTACTGCACTGATAGAGAGACTGATTCCAGATAGCCCCCCGATTCCAGTACATACGAGTATCCTGTCACCAAAATCCTGCTCCAATTAGAACCAGTAACCAGAAACTAGTAACCCATTCCTATGCTAGAACAAGGACTACCACGTGTAGGCAGGTCTTGTGgactttttttctcctcaatCTCCTCGGAAGTCTGAGTAAAACTCTTGCGAATCATCAATTCGGAGACGTGGACAAACTTTTGCTCCATGGATCATTTTGCATAGATCTCCTTCATCCGATGGCTGTCTGATTCTCCTCAAAACTCACCACGGATCGTGGGACAGACTGCGGAAAACTAGCTGCCATTTTAGATGACCGTGTATGATAATGAGACTTTGAACTCTTCTGTCGTACTGAACTGCATTACCCACAACTCTCTAGAAGACTTCTCTATGATTCTCTGCTGCACACATTCCTTCTCGTTTAGCACCGTTTTCTGAGCGTGAAATCACAAAAGGCGCATCTATTCTTGAAGACTGAGGACGCATCTTGTTTTCTTACgtttatttttcagtaataaTCTCAGTTACGGGAAAGGTAATCTTCactaattacaaagaaatggaaCTGTTTTCCatgtaaaatgtacagattCCCGATATTGCATATGATCATATGCGTTTCAtgttttttgacatattttgccccttgtatgtgtttttgtagaCTAGACCAATCCCGCAATGCTGTGCAGGTCCTCCAAAATACTATCCCTGATAAcgcacagcacaaacacacgctcacCTATCTACATACACACTCTCGTTCGGAAGGATGACCGTGGCCGcctcctttttcttttccaaatgCAACACTTTGTCATTCTAATTCTCACTGTGTCGATGATAACCAAGAGACTCTGGGGAAATGACTGTTGTGTGACTGACAGCCATTGCAGATGGGATCCCAAGGATGCCGGAATGTTGTCGTGTCATGAGTTCTAGAACAGTTAACCTTCAACGCgccatttttttatgtgtaggAGCAGAAATCGTACTTTGGATGCGGGTCGAAGAATTCCAGCTTATTGAAATTCCGGTCACACATGTTGACACAGCTAAAATTGTTCTCAGGCTAAAAAGATGGTCTATTATTGTGACTATTTCACATATCGAGTTGTGTTTTTAAGAGCTTAATCAAGAAGAGTAAGAAAGGCTAGCGGGATGTGAATTGGAACGGgtccaaaaaaaagtgtgaactGGGGAAATCATGATTACGAATCACGTGTGCAGCAtgtgtaaacataaaataaccaTGTAAAAGAGCAGACTAGAAGGATAGGACTTTAATGGAGTGGTTTGGAAGATGGAAACAACCTTGTAAAGGTCGGTTTCTGAAACTACTGTTTACTTGTTCTCAAACTGAGACTCCCTGTAGCTTGCACATCTATCTCTTGTTAACCCACCCCGAGAAAATTGACTGcatatttattcctgtgattcagtcttgtttttttattttttatttttcaacagatCAGAAATGTAGGATCCTAGAGAGCTTCGGGAAAAGAATCGGATCGGCACTGAgaccttttttattgttattatcatcaatattattattattacaatatcaatgaaattattatttattcttttcataTGCATTCTAAACTGAATGAACTCATAACTAATATTTGTTGTAACAGTGAAAGTTGTTTGccaacaaataaaatgactgaattaatatttacaatattt

Function

GO:

id name namespace
GO:0007218 neuropeptide signaling pathway biological_process
GO:0071391 cellular response to estrogen stimulus biological_process
GO:0007626 locomotory behavior biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0030246 carbohydrate binding molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4359 lncRNA downstream 20232 12969093 ~ 12973012 (-) True smim18
TU4338 lncRNA downstream 105591 12886776 ~ 12887653 (-) True G3020
TU4173 lncRNA downstream 375202 12617768 ~ 12618042 (-) True G2891
TU4170 lncRNA downstream 397950 12592441 ~ 12595294 (-) True G2889
TU4163 lncRNA downstream 443005 12549922 ~ 12550239 (-) True G2882
TU4410 lncRNA upstream 121284 13205787 ~ 13206826 (-) True G3070
TU4414 lncRNA upstream 210194 13294697 ~ 13295015 (-) True G3074
TU4420 lncRNA upstream 218250 13302753 ~ 13313529 (-) True G3080
TU4437 lncRNA upstream 305572 13390075 ~ 13390345 (-) True G3093
TU4438 lncRNA upstream 306562 13391065 ~ 13391301 (-) True G3094
XM_043244071.1 mRNA downstream 20754 12969151 ~ 12972490 (-) False smim18
XM_043243959.1 mRNA downstream 26737 12963598 ~ 12966507 (-) True qdprb.1
XM_043243898.1 mRNA downstream 36982 12944712 ~ 12956262 (-) False ldb2b
XM_043243887.1 mRNA downstream 36982 12944717 ~ 12956262 (-) False ldb2b
XM_043243880.1 mRNA downstream 36983 12944109 ~ 12956261 (-) True ldb2b
XM_043243613.1 mRNA upstream 39368 13123871 ~ 13136414 (-) False rfc1
XM_043243607.1 mRNA upstream 39368 13123871 ~ 13136414 (-) True rfc1
XM_043244042.1 mRNA upstream 52924 13137427 ~ 13141344 (-) True rpl9
XM_043243773.1 mRNA upstream 62941 13147444 ~ 13154024 (-) True ugdh
XM_043243982.1 mRNA upstream 69983 13154486 ~ 13159278 (-) True smim14
XR_006251305.1 other downstream 66762 12904199 ~ 12926482 (-) False prom1b
XR_006251304.1 other downstream 66762 12904199 ~ 12926482 (-) True prom1b
XR_006250806.1 other downstream 627249 12341735 ~ 12365995 (-) False gria2a
XR_006250810.1 other downstream 627249 12343449 ~ 12365995 (-) False gria2a
TU3761 other downstream 1480411 11510439 ~ 11512833 (-) True G2584
TU4379 other upstream 69983 13154486 ~ 13159246 (-) False smim14
unassigned_transcript_6 other upstream 133891 13218394 ~ 13218468 (-) True trnar-ucg
unassigned_transcript_7 other upstream 134793 13219296 ~ 13219368 (-) True trnar-ucg_1
unassigned_transcript_8 other upstream 136297 13220800 ~ 13220873 (-) True trnae-cuc
unassigned_transcript_9 other upstream 137079 13221582 ~ 13221654 (-) True trnar-ucu

Expression Profile