RNA id: XM_043243596.1


Basic Information

Item Value
RNA id XM_043243596.1
length 4448
RNA type mRNA
GC content 0.48
exon number 33
gene id pds5a
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 13168159 ~ 13189762 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGCTGCTTGGGATTTTATTAGAGGCCAGTAGAGgaccgtctgtctgtctggagaAGGATGATGGAGTTCCCGCAGCAGCCTCAGCAGCAAAGACCGGCGGGGGACGGAAAGATCACCTACCCACTGGGTGTCAAAGAGATCACTGATAAAATCAGCAACGATGAAGTCGTCAAACGACTCAAGCTGGTGGTCAAGACATATATGGACATGGATCAAGACTCGGAGGAGGAAAAGCAGCAGTACTTGGCTTTGGCTCTTCACTTGGCCTCTGAGTTTTTCCTGCGAAACCCCAACAAGGATGTACGGTTACTTGTGGCCTGCTGTCTTGCTGACATCTTCAGGATTTATGCTCCAGAGGCCCCATACACCTCACATGACAAGCTCAAGGAAATCTTTCTCTTCATTACACGGCAGTTGAAGGGATTAGAGGACACCAAGAGCCCTCAGTTTAAcagatatttttacttattagaGAACCTGGCATGGGTGAAGTCCTACAACATCTGTTTTGAATTGGAGGACTGTAACGAGATCTTCATCCAGCTCTTCAAAACCCTCTTTTCTGTCATCAATAACAGCCATAATCAGAAGGTGCAGATGCACATGTTGGACCTGATGAGCTCCATCATCATGGAGGGAGATGGAGTGACACAAGAGCTGCTGGACACAATCCTCATCAACCTCATCCCTGCTCACAAAAACTTGAATAAACAGGCATATGACCTCGCCAAGACTCTTCTAAAGAGAACAGTTCAGACCATCGAAACCTGCATTGCCTCATTCTTTAATCAGGTGTTGGTGATGGGAAAGTCCTCTGTGAGTGATCTGTCTGAGCATGTATTTGACCTCATTCAGGAGCTCTTTGCAATCGACCCTCTGCTCCTCGTCTCTGTGATGCCACAACTTGAGTTCAAGTTAAAGAGTAATGATGGAGAAGAGAGGTTGGCTGTGGTGAAACTGTTGGCTAAACTGTTTGGGGCAAAAGACTCTGAACTGGCCACTCAGAATCGCCCACTCTGGCAGTGCTTTCTGGGAAGATTCAATGACATCCATGTTCCTGTGAGACTGGAGTGTGTGAAGTTTGCTAGCCACTGCCTGATGAACCACCCAGACCTTGCCAAGGATCTTACTGATTTTCTGAAGGTGAGATCACATGACCCAGAGGAGGCAATCAGGCATGATGTCATTGTGACCATCATTAATGCAGGGAAGAAAGATCTGAACCTGGTGAATGATCAGCTTTTGGGCTTTGTCAGAGAAAGGATGTTGGACAAGCGGTGGCGTGTCCGTAAAGAGGCAATGATGGGGTTGGCTCAGCTTTATAAGAAGTACTGTCTGCACCATGAGGCCGGGAAGGAGTCCGCATTGAAAATCAGCTGGATCAAAGACAAACTCTTACACATCTACTACCAGAACAGCATAGATGACAAGTTGCTGGTGGAGAAGATCTTTGCACAGTACATGGTTCCTCACAGTCTGGAGACTGAGGAGAAGATGAAGTGTCTGTACTACCTTTATGCCTGCCTGGACACTAACGCAGTCAAAGCACTGAATGAAATGTGGAAGTGTCAGAATATGCTGAGAGGGCTTGTTCGAGAACTGCTGGACTTGCACAAATTGCCTACATCTGAAGCAAACACCACAGCCATGTTTGGAAAACTTATGACCATTGCTAAGAATCTCCCAGATCCAGGTAAAGCTCAGGACTTTATGAAGAAGTTTAATCAGGTTCTGGGTGAAGATGAGAAACTCCGTCTTCAGCTTGAGCAGCTCATCAGCCCTACCTGCTCATGTAAGCAGGCTGAACAGTGTGTGaggGAAATCACACGGAAGCTGACATTCCCCAAGCAGCCCACAAACCCATTCCTGGAGATGGTGAAATTCCTGCTGGAGAGAATCGCACCAGTGCACATCGACTCCGAGGCCATCAGcgccCTGGTTAAACTGTTGAATAAGTCAATCGAGGGCACtgctgatgatgaagatgagggAGTAACCCCTGATACTGCCATTCGTGCTGGACTTGAGCTACTCAAGgttttgtcatttactcaccccacTGCGTTCCACTCAGCTGAGACATACGAGTCTTTGCTGCAGTGTCTGAAGATGGAGGACGATAAAGTAGCCGAAGCAGCAATACAGATCTTCAGAAACACAGGACAAAAGATTGAAACAGAACTGCCACAGATTCGCTCgACTCTAATTCCCATATTACATCAGAAAGCTAAACGAGGCACCCCTCACCAGGCCAAACAGGCAGTCCACTGCATCCATGCCATCTTTCACAACAAAGAGGTCCAGTTAGCTCAGATATTTGAGCCGTTGTCTCGCAGTCTGAATGCAGACGTGCCAGAACAGCTCATCACTCCACTTGTCTCTCTTGGACACATTTCTATGCTGGCCCCAGATCAGTTTGCGTCACCCATGAAGTCAATCGTAGCCAACTTTATTGTGAAGGACCTTCTGATGAATGACAGATCTGTAGGAAACAAAAATGGGCGGCTCTGGACAGCTGACGATGAGGTTTCTCCTGAAGTGCTGGCTAAGGTGCAAGCCATTAAGCTGTTGGTCCGCTGGTTGCTGGGAATGAAGAATAATCAGTCCAAATCAGCAAACTCTACCCTCAGACTCCTCTCAGCCATGCTGGTCAGCGAGGGAGACCTTACTGAGCAGAAAAAGATCAGCAAGTCTGACATGTCTCGGCTGAGGCTTGCAGCTGGGAGCGCCATCATGAAACTGGCACAAGAGCCTTGTTACCATGACATCATCACTCCAGAACAGTTCCAGCTCTGTGGACTCGTCATTAATGATGAGTGTTATCAGGTGCGCCAGATCTTTGCTCAGAAGTTGCATGTTGCTCTGGTGAAGCTGTTGTTGCCGCTGGAGTACATGGCTGTGTTTGCTTTGTGTGCTAAAGACCCAGTGAAAGAGCGCCGTGCTCATGCCCGACAGTGCCTGCTTAAAAACATCAGTGTCCGTCGAGAATACATCAAACAGAACCCCATGGCCCATGAAAAGCTGCTGTCTCTCCTGCCAGAATATGTGGTGCCATACATGATCCATCTTTTAGCTCATGATCCAGACCTTACCAAACCACAGGATTTAGAGCAGCTCAGAGACGTCAAAGAGTGCTTGTGGTTCATGCTGGAGGTGTTGATGACCAAGAATGAGAATAACAGTCACTCTTTCCTGAGGAAGATGGTAGAgaacatcaaacaaacaaaagatgcCCAGGCCCCAGATGACCCAAAGGCAAATGAGAAACTTTACATCGTGTGTGATGTGGCGTTATTTGTGATCGCAAACAAGAGCACTTCATGTCATCTGGACTCCCCAAAAGATCCTGTGCTGCCTAGCAAGTTCTTTACCCCACCTGATAAGGATTTTATCAATGATAAAGAATATTTGTCACCAGAAGCCAAAATTGTTCTGCAGACAGGAAAAATCCAGCAACCACCAAAGCAGACAGGCGTGCTGGGGGCAGTGAACAAACCTTTAACGGTAACCGCTCGCCGACCGTACATTAAAACCCCCACCTCTGACACAGTCAGCAACGCAAGCACCAACTCTCAACCCAGCTCACCTGCAACAAATAAGAGCAGGGATGTGAGTTCTGAGGCCTCAGAAACCGGGGCGAGAGAGAATGAAGAGAACCCTGTAATCACAAAAGCAGCTGTAAAAAAGgaGGAGACCGCTCAGCCCAGCGGGAAGAAGCGTGCTGCTCCTGCGAGTGACGGCACAGAGAACAGCGTATCTTCAAACCCCTCAGCGGGGTCACAGCCCCCTGCCAATAAACCACGACGTGGTCGACCCCCTAAGAATGCCGCTGGCGTTCCCACCCCAGATAAAGAGGCTGGAGCTACGACAGGAGCAGGGGCCGGACGGGGCCGGAAGAGAGCAGCACCTGCCCAGGATCCTGCCACCGCAGCCTCAGCTGACTCAATCAGTGGCAAGACACCAAAACAGCAGAAAGAAGCAGAACCGAAAAGAGCAGTGCCACAGAGACAGATTGACCTGCAAAGGTAAAGCGTCGGTGTGTGAAGACAAAGACGGTCAGGCAGTAAACGTTCGAGACGCCCAACGAAGAGACGCCTCCACTTAATACATCAAACGCTCTTCACAAACCTGAACTGTCACTACCCCACACCTCAGACGAATGAGGAATGAATTCTTTAGATTCAGATGTTCAAAATTGTATGTAGAAACACAGACCTGTTTCTCTTCATtcgttttaatttctttttttgttttgtgttgaaaTTGTTCACGTTGCTCTTTGCTTCTCTGTCCGgagccatttttaaaaacaaacatttgaaagaaagaaaaaaaaaaagttttaatctgCTCTAAGGTTGCTTATTAAATACCTGGAaagatttttttactgttttatctcCCTCTCCTCTTTTAATCCTCTATTAAATCCAAATACTGTCCTCAGA

Function

GO:

id name namespace
GO:0008156 negative regulation of DNA replication biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4359 lncRNA downstream 195147 12969093 ~ 12973012 (-) True smim18
TU4338 lncRNA downstream 280506 12886776 ~ 12887653 (-) True G3020
TU4173 lncRNA downstream 550117 12617768 ~ 12618042 (-) True G2891
TU4170 lncRNA downstream 572865 12592441 ~ 12595294 (-) True G2889
TU4163 lncRNA downstream 617920 12549922 ~ 12550239 (-) True G2882
TU4410 lncRNA upstream 16408 13205787 ~ 13206826 (-) True G3070
TU4414 lncRNA upstream 105318 13294697 ~ 13295015 (-) True G3074
TU4420 lncRNA upstream 113374 13302753 ~ 13313529 (-) True G3080
TU4437 lncRNA upstream 200696 13390075 ~ 13390345 (-) True G3093
TU4438 lncRNA upstream 201686 13391065 ~ 13391301 (-) True G3094
XM_043244004.1 mRNA downstream 8715 13156838 ~ 13159444 (-) False smim14
XM_043243982.1 mRNA downstream 8881 13154486 ~ 13159278 (-) True smim14
XM_043243993.1 mRNA downstream 8889 13154486 ~ 13159270 (-) False smim14
XM_043244015.1 mRNA downstream 9021 13154486 ~ 13159138 (-) False smim14
XM_043243773.1 mRNA downstream 14135 13147444 ~ 13154024 (-) True ugdh
XM_043238283.1 mRNA upstream 209462 13398841 ~ 13422240 (-) False fam184b
XM_043238277.1 mRNA upstream 209462 13398841 ~ 13422238 (-) True fam184b
XM_043250221.1 mRNA upstream 244838 13434217 ~ 13451163 (-) True lcorl
XM_043250215.1 mRNA upstream 246518 13435897 ~ 13451163 (-) False lcorl
XM_043250226.1 mRNA upstream 251907 13441286 ~ 13451163 (-) False lcorl
TU4379 other downstream 8913 13154486 ~ 13159246 (-) False smim14
XR_006251305.1 other downstream 241677 12904199 ~ 12926482 (-) False prom1b
XR_006251304.1 other downstream 241677 12904199 ~ 12926482 (-) True prom1b
XR_006250806.1 other downstream 802164 12341735 ~ 12365995 (-) False gria2a
unassigned_transcript_6 other upstream 29015 13218394 ~ 13218468 (-) True trnar-ucg
unassigned_transcript_7 other upstream 29917 13219296 ~ 13219368 (-) True trnar-ucg_1
unassigned_transcript_8 other upstream 31421 13220800 ~ 13220873 (-) True trnae-cuc
unassigned_transcript_9 other upstream 32203 13221582 ~ 13221654 (-) True trnar-ucu
unassigned_transcript_10 other upstream 33172 13222551 ~ 13222623 (-) True trnar-ucg_2

Expression Profile