RNA id: XM_043243613.1


Basic Information

Item Value
RNA id XM_043243613.1
length 4208
RNA type mRNA
GC content 0.47
exon number 24
gene id rfc1
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 13123871 ~ 13136414 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tctctctctctctgcctccatCTGCGCGTCATCACGCTGCGCCTGAGTTGAGTATCATTGGCGCCAAAGAGGATTGGAGAAGCACTACTGTCTCGCaaattgtcaaaaaataaagaaacgcTTTTGACACATGCTTGCAAATGGATATCCGGAGGTTTTTTGCATCCACCAAACCTGCGGCCCCCAAACCTTCTAATGGAAGTACCAGCACCGACGAAGAGccgaagaagaagaaacaaaaatcaaaaactaaggTCACAAGTCCCACGTCTGATGAGAAACCATCTGGAAAACGAAAAAAAAGAGTCATAATTGATTCAGACTCtgaggaagagaaaaagaaggagaagaagaccAAGAAGGGCACTAAAGACACCGATGCTGCCACCGTGAAGAAACACCCCGTAACTTACGTGTCTGATTCTGATTCAGATGATACGTTTATGACTCTGAAAAAGGCGAAACCCAAAGAAAATGGAACAGCTAAAGGCAAGAAAGAATCAGATTCAGGAAAAGCAAAACAAGCGAAAGTCTCATCCGGTAAATCCCCAACCAAGTCCCCAAACGCAGTCTCGAAGGGAGGGGTAAAGAGCTCTCAGCCTGCCGTCTCCCCAAAGATCGGACCGACGCCGCCAAAACAAACGCCCACTTCAGTAATGGCCTTCTTTGGCAGCTCAAGTGTTCAGAGGTCAGACAAGAAAATGGTGGCCAGTACCAGCGCTAAAAGGAAGGCACCCACACAGGAAACTGAGGAGTCGCTCAGTGATGAAGCCATTGCAAAAGAGCTGCAGATGGATGAAGACATGGAGtTGGAAAAGCAGATCCATGATGATGAGGAATTTGCAAGAACGTTAGCcaagctggatgaagcgcccttACCGAAAAAGGCTCGGGTGGAATCTGTCTCCCCCTCCAAGAGCAGCTCTCAGACAAGTTCCTCAAACACCAAACCCAAACAGGACCCGTCCCCTAAAAAGAGTCCGGTGAAGACCAGCTCCAAACTGGCTCAGATGAAAAGACGACAGGAAGAAGTGGAAGAGCAAAGGAAAAAAGACAGGGGTGAAAAGCAGATTAAAATTTCTCCTAAGAAAGAGCCAATCTCACCAAATAGCTCGGAGCGGGCAGCTACGCCCAAAACAGGAAGTGTTTCCACCGGATTGACAAAATCAACACCTAAAAGTGACAGTGCACCCAATAAAACCTCGCCAACAAAACCGGAGAATACAAGCCCTGAGGATCTAGAGAAAAAACGGGCAAATTCATCAGCCTACCGTAACTATTTGAACCGAGAAGGACCACGAGCACTGGGGTCTAAAGAGATACCGCAGggagCAGAGAACTGCCTGGAgggttgtgtgtttgtgttgaccGGTGTGTTAGAATCTATGGAGAGGGATGATGCTAAGTCACTAATAGAGCGATATGGCGGGAAAGTCACAGGAAACGTCAGCCGTAAAACTACTTACCTTGTTCTGGGACGAGACAGTGGAGTCTCAAAGACCGAAAAGGCGGAGAGTTTTGGCACTAAGATCATAAATGAAGATGAGTTGTTGAACCTCATAAGAAGCAAACCAGGCAAGAAGTCTAAATACGAGATTGCGGCAGAAGCAGAGAATAAATCCTCTAAAACAAGGACTCCAGACTCTAGAGGCAAACCAACTCCTCCATCCAAGAAGGCCACACCACAAGGGCCCAGCCCCAACAAGAGAAACCCTTCAGAGGGAAAGTCTAAGCCTGGCTCTGCTTCTAAATCTGGAACACTTGGGACTTCTCGTTCAGAGGTCAAAAAGAGTTTGAGCTTTGATCAATCCAAGCGAGCATCCCCTGTATCCCACTCTACCCCCGAGAGTGAGGGTAGCAGCCTGTTGTGGGTGGATAAGTACCGCCCCCGTAGTCTGAAGAACCTGATTGGGCAGCAGGGGGATCAGAGTTGTGCTAACAAGCTTCTGCGTTGGTTACAGAACTGGCATAAACATCATAGCGGCAATACAAAAGCACCACCCAAATTTGGAAAGTTTGGGAGTAAAGACGACGGTTCTGGGTTTAAGGCTGCGCTGTTATCTGGGCCTCCTGGCGTGGGGAAGACGACTACGGCCGCTCTTGTCTGTGAGGAGTTGGGTTACAGCTACGTGGAGATGAATGCGAGCTGCACCCGGAGTAAGAACAGCTTAAAGGAAGTGATCGCAGAATCACTCAACAACACCAGCATTAAGAACTTCTATTCCGGTGCATCTCAGACAGTGAGCAGTAAACATGCCCTCATAATGGACGAGGTGGACGGGATGGCAGGAAATGAAGACAGAGGAGGAATACAGGAGATGATTGGTCTGATAAAACAGTCAAAGATTCCCATCATCTGCATGTGCAATGACCGCAATCATCAGAAGATCCGCTCGCTGGCGAACTACTGCTACGATCTGCGCTTTCAGAGACCCCGCGTTGAGCAGATCAAGggGGCTATGATGTCTATAGCTTTTAAAGAGGGTCTGAAGATCCCACCCCCAGCTCTGAATGAAGTCATTCTGGCGTCCAATCAGGATATTCGGCAgGTACTGCATAATCTGAGCATGTGGTCTGCTAAAGACAAAGTCATGACCTATGACCAGGCCAAAGCTGATGCTAACAATGCTAAGAAGGACATGAAACTGGGTCCGTTTGATGTGTGTCGTAAGGTGTTTTCTTCAGGAGAGGAAACTGCCCACATGTCTCTGATTGACAAATCAGACCTTTTCTTCCATGATTACTCTTTAGCACCACTATTTGTTCAAGAAAACTACCTGCATGTCCGACCAGCTGCTGCAGGGGGAAATCTGAAGAATCATTTGGTGTTGTTGAGTAAAACAGCAGACAGCATTTGCGATGGAGATTTAGTGGACAAACAGATCCGCTCCAGACAGACATGGTCTCTGCTTCCCACACAGgcGATTTATGCGAGCGTGTTGCCGGGGGAGTTGATGCGAGGTTATATGAGTCAGTTTCCGACCTTTCCCAGCTGGTTGGGCAAGTTCTCATCGGCTGGCAAACACAGCCGCATCATACAGGAGCTTGCTTCACACATGAGCCTAAAAACATTAAGTAGTAAGCAAGCCTTAAATCTGGATTACCTGCCGTATTTGCGCGCAGCAATATTAGAGCCTCTTCAGTCGCAAGGTTCGGagggagccaatcagagcgtaAAGCTCATGGATGATTATGACATCATCAAAGAGGATGTTGATAACATGATGGAGATCAGCATGTGGGGCGGACAGCCGGATCCCTACTCTAAACTAGACtctaagGTGAAAGCTGCGTTTACAAGAGCCTACAATAAGGAATCCCATCTTACGCCTTATTCCTTACAAGTGGTGAAGAAAAGCCGTAAAGGTGCTGTTGACCCTGAGCTTATAGGAGAGCTTGAGACTGAATCTCAGTTCCAGGAAGAGGAAGACGATGATGGGCTTACAGCAGATGCAATGATAAAGCAGAAAAAAGCCAAACCAGCAAAGGACATCAAGCAAGAGAAACCAGGGGCTTCTGGGAAGGGGAAAGGCAGGGGTAAAGGAAAGGCCAAGAAGTGAGAGAAACATAGGAGAGAACGAGACGGAAAGCcctcctctctttctgttttcacaAAGAGTGGCTGAATGACATTAGCTCtataaacagaatttttttgtctgtgagTCATACTCGTGCACTTCCTGAAAGCCATCACTCAGCGTAAGCTGCTTTCAGCAGAGCGGACACTGCAGGGACCGGGGGGCTGGGGGTGGACCACACATTTTCACAGAAGTTATTATATGGTTCACAATTCATCAAGCATGTACATATGCATCATACTGTTAACACGCGGCTCTGAAGCTATATTCATCTCAAAGGTAAACAGAGTTAAGGGCACTTAATGTCACTGTACTGGCGTAACCCTCATGACAAagtacacaaacatttaaacatattagcttcagcttttcacatttaaacacGCTCCCTCTTCCACACAGATACCATCTATACTCGCTGCATGTCAAGTACACATCGTGTAAATACCTGTCTGCCACGTTAGCATTTTTCGGGAATACTTGcagatgaatatatataaacaatccTTTTCTTAGTTTTCTATGGCAGTACTTTTGGATTGATAGTGTGTGATATTAACCTGAAGATTATTCTGTAAATGACTGAACGTGTacaatttgaataattaaaacaagaaTTATGTTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4359 lncRNA downstream 150859 12969093 ~ 12973012 (-) True smim18
TU4338 lncRNA downstream 236218 12886776 ~ 12887653 (-) True G3020
TU4173 lncRNA downstream 505829 12617768 ~ 12618042 (-) True G2891
TU4170 lncRNA downstream 528577 12592441 ~ 12595294 (-) True G2889
TU4163 lncRNA downstream 573632 12549922 ~ 12550239 (-) True G2882
TU4410 lncRNA upstream 69373 13205787 ~ 13206826 (-) True G3070
TU4414 lncRNA upstream 158283 13294697 ~ 13295015 (-) True G3074
TU4420 lncRNA upstream 166339 13302753 ~ 13313529 (-) True G3080
TU4437 lncRNA upstream 253661 13390075 ~ 13390345 (-) True G3093
TU4438 lncRNA upstream 254651 13391065 ~ 13391301 (-) True G3094
XM_043243510.1 mRNA downstream 39368 12993244 ~ 13084503 (-) False adgrl3.1
XM_043243486.1 mRNA downstream 39368 12993244 ~ 13084503 (-) False adgrl3.1
XM_043243505.1 mRNA downstream 39368 12993244 ~ 13084503 (-) False adgrl3.1
XM_043243497.1 mRNA downstream 39368 12993244 ~ 13084503 (-) False adgrl3.1
XM_043243491.1 mRNA downstream 39368 12993244 ~ 13084503 (-) False adgrl3.1
XM_043244042.1 mRNA upstream 1013 13137427 ~ 13141344 (-) True rpl9
XM_043243773.1 mRNA upstream 11030 13147444 ~ 13154024 (-) True ugdh
XM_043243982.1 mRNA upstream 18072 13154486 ~ 13159278 (-) True smim14
XM_043243993.1 mRNA upstream 18072 13154486 ~ 13159270 (-) False smim14
XM_043244015.1 mRNA upstream 18072 13154486 ~ 13159138 (-) False smim14
XR_006251305.1 other downstream 197389 12904199 ~ 12926482 (-) False prom1b
XR_006251304.1 other downstream 197389 12904199 ~ 12926482 (-) True prom1b
XR_006250806.1 other downstream 757876 12341735 ~ 12365995 (-) False gria2a
XR_006250810.1 other downstream 757876 12343449 ~ 12365995 (-) False gria2a
TU3761 other downstream 1611038 11510439 ~ 11512833 (-) True G2584
TU4379 other upstream 18072 13154486 ~ 13159246 (-) False smim14
unassigned_transcript_6 other upstream 81980 13218394 ~ 13218468 (-) True trnar-ucg
unassigned_transcript_7 other upstream 82882 13219296 ~ 13219368 (-) True trnar-ucg_1
unassigned_transcript_8 other upstream 84386 13220800 ~ 13220873 (-) True trnae-cuc
unassigned_transcript_9 other upstream 85168 13221582 ~ 13221654 (-) True trnar-ucu

Expression Profile