RNA id: XM_043243696.1


Basic Information

Item Value
RNA id XM_043243696.1
length 4019
RNA type mRNA
GC content 0.40
exon number 14
gene id tapt1b
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 12929116 ~ 12943417 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GACGCCTGAATGTTGTGTCTGCGGGGAAGATGGCGGACTCAGTAGCGACTGGTCTTGCGGACGAAAACGAGACTGAAAATGAGGATAATGAGAGGGAGAAACGACTCTTCGGCGGTGTCAAAAAGACGGAGAAACAAGCCGCTGCGTCAGACCTTACAGAAACTCTGGGGTTTTACGAGAGGAAGGCGAAATGCAAGGAGAGGAAGAGCAATGTGTCAGATCTCTCTCTTGTGAGGTTTATTAGTGCTGAGTTGACTAGAGGATATTTTCTGGAACACAATGAGGCCAAATACACTGAGCGGAGAGAGAGGGTCTATACCTGCCTGCGTATTCCAAAAGAACTGGAGAAGCTGATGATGTTTGGGTTTTTCCTGTGCCTGGACGTGTTTCTGTACGTGTTCACTCTGCTGCCTCTCAGAGTGCTGCTGGCCCTGATCAGACTGCTGACACTGCCCTGCTGCGGACTCAGtggaTCTCGTATCTTGCAACCTGCTCAGGTGTGTGATGTTCTGAAGGGTTTCATCATGGTTCTGTGTTATTTCATGATGCATTATGTGGATTACTCCATGATGTACCACCTGATTCGGGGTCAGTCTGTCATAAAACTCTACATCATCTACAACATGCTGGAGGTGGCAGATCGTTTGTTTTCATCTTTCGGTCAGGATATTCTGGATGCTTTGTACTGGACTGCCACTGAaccaaaagagagaaaaagagctcATATAGGAGTCATCCCACATTTTTTCATGGCAGTTCTTTATGTCTTTCTACATGCCATTCTGATTATGGTTCAGGCCACCACTCTGAACGTGGCTTTCAATTCACACAACAAGTCACTGCTCACCATTATGATGTCTAATAATTTTGTTGAGATCAAAGGAAGCGTATTCAagaaatttgagaaaaataaccTCTTCCAAATGTCCAACAGTGACATCAAGGAACGATTTACAAACTACACTCTCCTACTAATCGTCTGTCTCAGAAATATGGAGCAGTTTTCCTGGAATCCAGATCATCTATGGGTACTGTTTCCTGATGTTTGTATGGTGATCGCCTCAGAGATTGCAGTGGATGTTGTCAAACATGCCTTCATCACAAAGTTTAATGACATTACAGCAGACgTCTATAGTGAATACAGAGCGAGCTTGGCATTTGATCTGGTCAGCAGCAGACAGAAGAATGCATACACAGACTACAGTGACAGTGTGTCCAGGAGAATGGGTTTCATTCCTCTTCCTCTTGCTTTACTGTTGATCAGGGTGGTGACCAGCTCAGTGAAGATCCAGGGCTCTCTGTCTATTGTTTGTGTTGTGCTCTTCTATTTGGGtATGATCACCCTGAAGGTGCTGAACAGCATTGTGCTATTGGGAAAATCCTGTATGTATGTGAAAGAGGCAAATATGGAGGAGAAGCTGTTTCAGAATCCCCCCTCTGCAGCTCCCAGCAGAGTGTCCAGCAGAGCCCACCGCACCAAACACACACGCGAGCCACCAGGTGAGCCAGCGGAGGAGGACATGTCTGCCTCAGTCACCACTCAACCCACCCAAAGGGATGAATGTCCCGCCCCTCAGATCCCCACCAGCGAATCAGATCAGTTCCTCACTACACCAGATGAATCCGAAGAGAAAAGCCTTATTCAGGACGATACCGAACTTAAACACAGGGCGCCCAAAAAAGACTTGCTGGAGATTGACCGCTTTACTATCTGTGGTAACCGAATCGACTGACACTAACGCCTACCATCAAGTTTAAGAGTGACGCCAGGCACTCTGCCCGCCCTCTCTGCCAGCTTGATTCGTTTGACATTTGAACCTGAGCTCCTTGGAACGGGACTGCAAGAAACTGcaggatatttattattaagtgaTGCACCTAATTTATTTAAGACTTATAAACAGACAATcgcaccgacacacacacacacacacacagtttttaaGCGATTGGAGTCCACCCAGTGACGTTTCCAAGCTTTTAAAAGGTTCAAGATCACCAGCGGAGGTCACCTTTGGACGGCAGGAAAGATTTTGGTCTGATGGTCATGTACTTAACCTTTCAAAGGGGGCATTCAGTTATGGCAAAAAGAGAACGGGATGAATTATATTCCTAAAGTACATAGATTCCATTTATTAGTGGAAAAATAGTGGGGttcaaataatcacaaaatgtaatatacaaaaattcataactgtttttttttttcattcataatttttctatttaaaaatgtccctTCTCctcaaaatacttttaatttgaaatattaccGTGTTCCTTGTCAGTCAATACTGAAATGTAATTACAGGTGTGTTCCAcgggttttgtttttgtgtttttgaatgaatgcagACCGCAGGCAGAAATAGCGTatcactattttatttatttatatttttaagagagTTGCTCATTTCAGTTTATGTGCAGGGTTtcctgtgacaaaaaaaaatagtgttttgcATCCTTTGAGGTAATGACCTTTTAAAAGGCTGTTGTGATACTGTGATGAAACGCATGCTTGTGGATTGAGTGAAGTGCTTTACAAGTCAGCGTCTGAATTAAAGgatcatacatttttacaacatGGTCGCATGGAACCAGAAAATTGAAGCATAATATCATAAATGAAGCTAAATTGAAGCAGTGAAACATTTCCCTTTAAGGATaaaacttttttggttttttttttccccgcaaGCTCTTGGCATCTTATTGTACCAAGAGCAGCGTATTAGATGAACAATCGTCCACTGGTGCTGATGTTGGGAGCAGATGAGAAATAATCGATTGCCAACATTCCAAAAGTCAGAATCTTGACCAAAGCAAAGTAGGATATACAACCTTTTGCTAATATCTAAggtgtattttaaagaaaaaaagggccTGTTGACCCCAAGTATACAGTTTTTGCAAGTCAGTAAGCATCAGAATCCAGTAATGTGAGCTAATAACAGTGAGCTTCATAATAACCTACTTATCAGTTGACAGTGACATTTGTGAAAGCCTGTGATTAGTCATAATGCATCATGTGTAGTACTATAGAAATTATTGGAATGCTTTTTCATCATAGAcaataatgttttatacatttgctTTACATAACGGACCACACTGtcttaaaaagtattttttgtgaTGCACTAACATTTCTTAGTACTACAGGAGATTAGAATTTAAGTTGTTTTTCTCTCAGTAATGACaacatgttttgtatttctgtttctgtttttttattttggactgATTTTGGAATTTGTCTTTGCTGTATTACAAATGTATGGCTGTGATTGCTTTGCTTTGTAATATCATTAAGATACACTCAGTCAGCATGTCGACAGCCGTCATATTGAGTAAGGTGCTCCGTTTTTTCACAAAAGGTTGATTTAATTTATCGTTTCATAACTTGTAAATTGAAAATATCAACTATGCCAAGGAATTGTTTACCCAGTTATCAAACTAATGCAAACTCTGAATCacacttttttcaaaacctCCTCAGAAGCTTTCTCTTGACTTAAACTGCcaaaatgatgcttttttttttgcattttaaacattgaaGTTAGAAATACTCCttgtttttgaaagtaaaaGATGCTCGGTTTTGTTTTCGGTGTAACTGCCTGTGCATTCCCAAAGGTTCGGTCTCCTTTAGACTCTTGAAATAAGGCTGAAGCTGAACTGCACTGGATATGGATCGCTACTATGATTTTGCTTGACAGAACTCGCTTCCACTTATttggaaaagcaaaagaaaaaaaaattcaaccaTCCCAAGTTCTTTCAATACTGCTGGACTTCACTACCGTTTTGTTCTCACTGGTCAAtatcatgttgttgtttttggtgttttttttttgtaccgaGATCGGCTCCAAGGTTCTTACAACTTGTTTTTCCTGTAGAAACTGAAGAGGAATGACAATGTCCAATCCCTTGTATGGGATGTTTTAGAGACAGAAATGGGGAGAGGAATCAGGGCGTTATGTTAAttaaagttttgttgttttgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4338 lncRNA downstream 41463 12886776 ~ 12887653 (-) True G3020
TU4173 lncRNA downstream 311074 12617768 ~ 12618042 (-) True G2891
TU4170 lncRNA downstream 333822 12592441 ~ 12595294 (-) True G2889
TU4163 lncRNA downstream 378877 12549922 ~ 12550239 (-) True G2882
TU4117 lncRNA downstream 473544 12455354 ~ 12455572 (-) True G2842
TU4359 lncRNA upstream 25677 12969093 ~ 12973012 (-) True smim18
TU4410 lncRNA upstream 262371 13205787 ~ 13206826 (-) True G3070
TU4414 lncRNA upstream 351281 13294697 ~ 13295015 (-) True G3074
TU4420 lncRNA upstream 359337 13302753 ~ 13313529 (-) True G3080
TU4437 lncRNA upstream 446659 13390075 ~ 13390345 (-) True G3093
XM_043243653.1 mRNA downstream 2634 12904199 ~ 12926482 (-) False prom1b
XM_043243634.1 mRNA downstream 2634 12906761 ~ 12926482 (-) False prom1b
XM_043243625.1 mRNA downstream 2634 12906761 ~ 12926482 (-) False prom1b
XM_043243662.1 mRNA downstream 2634 12907138 ~ 12926482 (-) False prom1b
XM_043237010.1 mRNA downstream 29453 12897567 ~ 12899663 (-) True fgfbp2b
XM_043243880.1 mRNA upstream 693 12944109 ~ 12956261 (-) True ldb2b
XM_043243898.1 mRNA upstream 1296 12944712 ~ 12956262 (-) False ldb2b
XM_043243887.1 mRNA upstream 1301 12944717 ~ 12956262 (-) False ldb2b
XM_043243959.1 mRNA upstream 20182 12963598 ~ 12966507 (-) True qdprb.1
XM_043244071.1 mRNA upstream 25735 12969151 ~ 12972490 (-) False smim18
XR_006251305.1 other downstream 2634 12904199 ~ 12926482 (-) False prom1b
XR_006251304.1 other downstream 2634 12904199 ~ 12926482 (-) True prom1b
XR_006250806.1 other downstream 563121 12341735 ~ 12365995 (-) False gria2a
XR_006250810.1 other downstream 563121 12343449 ~ 12365995 (-) False gria2a
TU3761 other downstream 1416283 11510439 ~ 11512833 (-) True G2584
TU4379 other upstream 211070 13154486 ~ 13159246 (-) False smim14
unassigned_transcript_6 other upstream 274978 13218394 ~ 13218468 (-) True trnar-ucg
unassigned_transcript_7 other upstream 275880 13219296 ~ 13219368 (-) True trnar-ucg_1
unassigned_transcript_8 other upstream 277384 13220800 ~ 13220873 (-) True trnae-cuc
unassigned_transcript_9 other upstream 278166 13221582 ~ 13221654 (-) True trnar-ucu

Expression Profile