RNA id: XM_043243785.1


Basic Information

Item Value
RNA id XM_043243785.1
length 2727
RNA type mRNA
GC content 0.44
exon number 6
gene id chrnb3a
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 12778589 ~ 12794404 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGCTCCGCTGCAGCTGCTCGGCGAATGAATGGCATCCTTCTCAGCATCACGTAAACGCCGACGGGGGGGAGCGAAAGCATCTTCCACTCGTGTTCGCCTCGGACGGAGCAGGCGGAAAACCCCACTCCGTTCATGATTAATTTATACCTTTATCACACAGCAGGTTGCAGCACATCTGATCGTTTTTACGAAACGGCTCGGTGTCCGGCcgtatgaataaaaaaagagaataccCCCTTTTGTCGGTGACAGAGACTCACCGTTCAAACAGCATGCAATAATTCCATTCAATGAAGGAACCGGAGCCGGGAAAGACAGCATGAAGTTACAAATATCCGGTCTTGTGTTCGCAATGGCAGTAGCCTATGCAACGATAGAGGcTCCTGAAGAGTTTGTCTCACTAGCTGAGATGGAGGACACGTTGTTGAGGAATCTTTTTCGGGGGTATCAGAAGTGGGTGAGACCTATCCTTCACGCCAACGACACGATCACCGTTCGCTTCGGTCTGAAGATCTCGCAGCTGGTGGATGTGGATGAAAAGAATCAACTAATGACTACAAATGTCTGGTTGTGGCAGGAGTGGACAGACTATAAGCTGCGGTGGAATCCAGAAGATTATGGTGGAATCACATCCATCAGAGTGCCCTCAGAAACTATCTGGCTGCCAGACATCGTCCTTTATGagaaCGCTGATGGCCGATTTGAGGGTTCTCTAATGACCAAAGCCATTGTAAGGTTTAATGGCACCATCATGTGGACTCCTCCTGCCAGCTATAAATCCTCCTGTACCATGGATGTCACGTTTTTCCCTTTCGACAGACAGAACTGCTCGATGAAGTTTGGGTCGTGGACATACGATGGCACTATGGTGGACTTGACCCTGGTGGACGCATACGTAGACCGTAAAGACTTCTTTGATAATGGCGAGTGGGAAATACTCAACGCCACTGGCCAGAGAGGCAGTCGGCGGGACGGCATTTACTCCTATCCTTACGtcacatattcattcattcttaaaCGTCTTCCTCTCTTTTACACACTCTTTCTCATCATCCCATGTCTCGGTCTGTCGTTTCTCACCGTGCTGGTCTTCTACCTCCCCTCGGACGAAGGAGAAAAGCTTTCCCTCTCTACCTCTGTCCTTGTGTCTCTCACTGTGTTTCTTCTCGTCATTGAAGAGATCATTCCGTCTTCCTCTAAAGTCATTCCTCTGATAGGAGAGTATCTGCTCTTTATTATGATCTTCGTCACGTTCTCTATCATAGTAactgtttttgtcattaatgTCCATCATCGCTCTTCTGCCACATACCATCCCATGGCACCGTGGGTTAAGAGTCTTTTCCTCCAGAGATTACCCAGACTGCTCTGCATGAGGGGACACACTGATCGTTATCAGTACCCAGACATCGAGCTGCGGAGCCCAGAGCCAAAAAGAGGGATGAAAAGAGGGCAACAAAAGAGTGCTGGAGGAGGACGAGGGGGGTTAAAGGAAGATGAGAACCAGGCTTGGATTGCCCTGTTGGAGAAAGCCACTTACTCAGTGCACTACATTTCCAGACACATCAAGAAGGAACACTTCATCAGAGAGGTTGTTCAGGACTGGAAGTTTGTGGCTCAGGTGTTGGACCGGATCTTCCTCTGGGTCTTTCTCACGGTTTCTGTGCTTGGGACCATCCTCATCTTCACCCCAGCTCTGCAGATGTACCTCAGCACATCTTAGAGATTTCAGCCAACAGAATCTCTTATGACATTCCTATGACCTCTGAAATATGTGTAGTTCCCACAACATTACAGTAATCCCTCTTCTGGCCTAACCACATCTGTAATCCCCTCCGAATTCAGCCTCTATCTCTCCTTCCTAGACGCTGTGTTCAATAGTCagaatgaaaatggaaaaactcAGCTAAAATGAAGTTCTGGAATTTTCTGCCCTTTTAACGCAAAACTAAAAGGCGGCTTATACAGTTGAGGGAGTTTGGATCTGTGTAATCTCTCTAAGGGGATCATGGTTTTAAAGATCTTCAGTAAGTTGGCATTACTGTGTAAAAGGTATAACCACCTTTTTATGCCTCTCATTTAGCTTtcggccattttttttttatttagatcagGTTAAAATGTGTCATTGTCCATGTAAATACCATTTTActttatgattttatgattCTGCTTACTAGGTAGCAAACCTATTAAAAAACTGTCTGTTtgcagtaaatgtaaaaaaaacatatcactGTCCAGATGAATAAAAttgttaattcattttattaataatgtagcGTTATTTCTGTAAGTCTGGATGACGATCAGTTATAATAGTATCTCTTATTAGCACAGGTGACATTTACTGTACAGTCTatcatctgtttttaaaatactgttaaatgaaGTAGGGTCATGCCTTGGATGAtattatgcatatgtaaattTTATGCAGATGAGACCATGCATAATACAAAGCGCATGCGTATGTGTCTACAACTggaatttataaataaaactctGCAAGATTTCGGGCTCATATATCGTTTTATAAATCTGCTATTTATGCCCATGCATATTTTTAGCAATGTCAAGCATCTTTACCCCTAAACCCTTGAAGATACTGTAGCTGATTTAAAAGGAGAGGGGAACCGATCACGACTTGTCTTGGCACCATTAGCAAGGACTGTATTACGACAAGGGTCTTTATgacaattatacaaataaagtttttagcGATC

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006812 cation transport biological_process
GO:0045211 postsynaptic membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K04814 CHRNB3; nicotinic acetylcholine receptor beta-3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4173 lncRNA downstream 160547 12617768 ~ 12618042 (-) True G2891
TU4170 lncRNA downstream 183295 12592441 ~ 12595294 (-) True G2889
TU4163 lncRNA downstream 228350 12549922 ~ 12550239 (-) True G2882
TU4117 lncRNA downstream 323017 12455354 ~ 12455572 (-) True G2842
TU4116 lncRNA downstream 323820 12454231 ~ 12454769 (-) True G2841
TU4338 lncRNA upstream 92372 12886776 ~ 12887653 (-) True G3020
TU4359 lncRNA upstream 174689 12969093 ~ 12973012 (-) True smim18
TU4410 lncRNA upstream 411383 13205787 ~ 13206826 (-) True G3070
TU4414 lncRNA upstream 500293 13294697 ~ 13295015 (-) True G3074
TU4420 lncRNA upstream 508349 13302753 ~ 13313529 (-) True G3080
XM_043243742.1 mRNA downstream 5759 12724574 ~ 12772830 (-) True chrna8
XM_043243753.1 mRNA downstream 27298 12724574 ~ 12751291 (-) False chrna8
XM_043243455.1 mRNA downstream 135013 12618483 ~ 12643576 (-) False LOC122348170
XM_043243446.1 mRNA downstream 135013 12618483 ~ 12643576 (-) True LOC122348170
XM_043243673.1 mRNA downstream 161307 12607766 ~ 12617282 (-) True melk
XM_043243945.1 mRNA upstream 22351 12816755 ~ 12823474 (-) True chrna6
XM_043243762.1 mRNA upstream 47848 12842252 ~ 12854994 (-) True chrnb5a
XM_043243971.1 mRNA upstream 78801 12873205 ~ 12876398 (-) True uchl1
XM_043244029.1 mRNA upstream 98231 12892635 ~ 12894247 (-) True fgfbp1b
XM_043237010.1 mRNA upstream 103163 12897567 ~ 12899663 (-) True fgfbp2b
XR_006250806.1 other downstream 412594 12341735 ~ 12365995 (-) False gria2a
XR_006250810.1 other downstream 412594 12343449 ~ 12365995 (-) False gria2a
TU3761 other downstream 1265756 11510439 ~ 11512833 (-) True G2584
unassigned_transcript_5 other downstream 1280231 11498285 ~ 11498358 (-) True trnai-aau
TU3498 other downstream 1724648 11053154 ~ 11053941 (-) True G2401
XR_006251305.1 other upstream 109795 12904199 ~ 12926482 (-) False prom1b
XR_006251304.1 other upstream 109795 12904199 ~ 12926482 (-) True prom1b
TU4379 other upstream 360082 13154486 ~ 13159246 (-) False smim14
unassigned_transcript_6 other upstream 423990 13218394 ~ 13218468 (-) True trnar-ucg
unassigned_transcript_7 other upstream 424892 13219296 ~ 13219368 (-) True trnar-ucg_1

Expression Profile