RNA id: XM_043244069.1


Basic Information

Item Value
RNA id XM_043244069.1
length 1832
RNA type mRNA
GC content 0.40
exon number 2
gene id LOC122348313
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 7527085 ~ 7529413 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTTACTCTGGCGCGCTCAGCAAACGCGCACGAGCAAATAAAAACGCGTCACGAACACGTCGCCTTCTCATTCTGTGCTTCAAAAACTTGGGAAGAGCATGTAACACCGGGATAAAGAGAAAGGCTGCTTTTGAGGaacTCTCAACTTGAGACAATAATGTTTAGCATTCAGGTTATCTTGTACAGACTCCTGGCAAAAATGCAGCGGCAGCTCaagtgtttctttcttctgggAACATTATTGATCACATTCTTCATAATTTGCTGGGATTCAAGGAGAGAGAGGACGTTTTACTGGCCAACTGCTTCATCGCCAAATCTCACACACCTCAAAATGCAGCAAGAACATCGAAAGCATGTTATAAGAGAGCTTTGCTCGACCAGCAGCGGCCtgaattttgaagaaaaattaaTGACATTTGACCAGATTCCCAACAAAGCCCTGGACCACCTCATTGTGGATGATCAACATGGTGTTATATACTGTTACGTACCGAAGGTAGCCTGCACCAACTGGAAACGAGTCATGATTGTTCTCAGCCAGAACCTGAAGGCACCTGATGGAGCTCGGTATCTGGATCCTCTTGACATACCATACAAGATAACCCATAATTCTACAGTGCATAAGACATTTAACAAGCTTTGGATGCGTTTTGGACGTTTCGCGCGTCCTTTGATGCATCACAAACTGAAAAATTACACAAAGTTCCTTTTCGTACGGGATCCTTTTGTACGACTTATTTCTGCTTTCCGGGACAAGTTTGTTAAGCCAGATGAGTATTTCTACAGCCGGTATGGCTCCACAATGCTTCAACGTTATGCTAATATCTCAAAGCTCCCCGACTCCGCTCAAGAAGCCTTCGCTGCAGGTATCAgattgtcatttactcactttatTAAGTACCTGTTAGATCCACAGACTGAGAAGGAGAAGCCATTTAATGAGCACTGGCAGCAGATGTACAGACTCTGCCATCCGTGCCAAATTGAGTATGACTTCGTTGGGAAATTGGAAACTCTTGATGAGGATACTGAACATTTGTTGAAGATTCTTGGGCTGGATAATTATATTCGCTTTCCCCCAGGGTACGAAAACAGGACAGCGAAAGACTGGGAGCAAGAATGGTTTGCAAACATTTCAGTGTCTGACAGGAGAAAACTGTACCATCTTTatgaaacagattttaaattatttgaatatgaaaaacCTGAGACACTTCTGGATGTGTGATTACATATTGCTAACTAAAAACATTGATTGCTTTTAGATTACCTTAACGCCACATGCAAATAaactatttgtgtgtgtgtgtgtgtgtgtgtgggtgtttgtgtgttggtatttgtggtttatttgttgtttaataatatgGTAATGACAGTTTGAAgatggtttatgaggacactgccaatgtcttgtaattcaaaaggcttacaaaatactaaatggtgttgtttttaaaaatctaaaatgccaCAAAGTTGGTGTAATAGCACGCATAGTTTGAatagtataaaaaccattacgcctttGGAGAGTttccataaaccacaaataccaacaggtgtgtgttttgtttatccAATAAAGTTGGTGTAATATTATAGATACTCTTCAGACCGCACCTTAAGTGATTCTTAAAATTCACAAACTTTGACCCATTAGACGTTAAGGAAGTGAACAAGTTGACAGTCAGGCAGGTTGGGATTGCAATCTAACAATGCGCCAGTTATTACAAGAACTTTCTAGGTTCTGTCATCTGTTATGCTACAAATGCAGTTTGTTTGCATACTTGCATCTTCAAGGccagattaaaatgatttatgacatA

Function

GO:

id name namespace
GO:0016051 carbohydrate biosynthetic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008146 sulfotransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2428 lncRNA downstream 210767 7315910 ~ 7316318 (-) True G1663
TU2425 lncRNA downstream 214187 7312252 ~ 7312898 (-) True G1660
XR_006250485.1 lncRNA downstream 228940 7297494 ~ 7298145 (-) True LOC122341717
TU2397 lncRNA downstream 357063 7167577 ~ 7170022 (-) True G1642
TU2398 lncRNA downstream 362364 7162323 ~ 7164721 (-) False G1642
TU2585 lncRNA upstream 126665 7656078 ~ 7660532 (-) True G1781
TU2621 lncRNA upstream 214082 7743495 ~ 7797446 (-) True G1809
TU2672 lncRNA upstream 423800 7953213 ~ 7984303 (-) False G1845
TU2673 lncRNA upstream 451358 7980771 ~ 7984303 (-) True G1845
TU2691 lncRNA upstream 545762 8075175 ~ 8077330 (-) False LOC122341751
XM_043220344.1 mRNA downstream 41428 7318338 ~ 7485657 (-) False sdk1b
XM_043261425.1 mRNA downstream 41428 7318338 ~ 7485657 (-) False sdk1b
XM_043253963.1 mRNA downstream 41428 7318338 ~ 7485657 (-) False sdk1b
XM_043246711.1 mRNA downstream 41428 7318338 ~ 7485657 (-) True sdk1b
XM_043247565.1 mRNA downstream 215864 7299948 ~ 7311221 (-) False knl1
XM_043246607.1 mRNA upstream 3836 7533249 ~ 7540360 (-) False brat1
XM_043246615.1 mRNA upstream 3836 7533249 ~ 7540247 (-) True brat1
XM_043246624.1 mRNA upstream 3836 7533249 ~ 7539761 (-) False brat1
XM_043234143.1 mRNA upstream 44315 7573728 ~ 7577469 (-) True zmp:0000001069
XM_043244596.1 mRNA upstream 49527 7578940 ~ 7607067 (-) True ttyh3b
XR_006250550.1 other downstream 231406 7218986 ~ 7295679 (-) False dmd
XR_006250549.1 other downstream 231452 7205584 ~ 7295633 (-) False dmd
TU2401 other downstream 357664 7162323 ~ 7169421 (-) False G1642
XR_006250919.1 other downstream 399678 7071589 ~ 7127407 (-) False trpc5a
TU2105 other downstream 985702 6539528 ~ 6541383 (-) False LOC122342514
TU2800 other upstream 1073887 8603300 ~ 8607795 (-) True G1926
TU2970 other upstream 1249805 8779218 ~ 8782587 (-) False LOC122351550
TU2978 other upstream 1265658 8795071 ~ 8798355 (-) False LOC122351550
TU3335 other upstream 2869774 10399187 ~ 10401686 (-) True G2302
TU3397 other upstream 3212509 10741922 ~ 10745896 (-) False LOC122347930

Expression Profile