RNA id: XM_043244165.1


Basic Information

Item Value
RNA id XM_043244165.1
length 2657
RNA type mRNA
GC content 0.54
exon number 9
gene id zfp91
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 19589806 ~ 19597002 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCGACTTAAAGGAGACGCAACAAAGAGCGACAGCAGTGGGCCCTGCTAACAGCGTGGCTTACTATAGCTTTAAGAACTTAAAATAGGGTCTGggtctttaaaatgaattttgcaCAGTTATTATAGAGATGATAGACTAAGTTTTCTATTTATGCGACTTACATTTTTGCACTAGGTTTGCAAAGAGAAGTAAGGACATCCATTGAAATATGTTTGACAATCGGATCAGGGCCGTTAGCAACCCaacatttttcatgttatgTCTCCTGTTTATTGCAAGCTATGTTTCGTTTTGTTGAGCGTTTTTGAGGCGTCCTGAAGTACGAGAAAACAACTTTAGTGGTGATGGAGCCGCAGCTCTCGAACAACAAAGAGGAGGTGGAGAATGAGGCGGCCCTGGAGAAATCCGCGGGGCAGAGTACCGCATCCACCCCGTGCAGGGCATTCAGAGGACGGGGCGACGGGTGTCTTAAGACCGAAGGGGCTTGCCCACCCGAGACGAACGGAGCTGCGCCCAGCGTGGCGGGATCCGGACGGGTTTTACGGGACAGGTCAACGCGAGCGATTCCCGTGTGGAGGCAGAGCGATATCGGGGAGGACCGGGGTGAAGTGACACGCGACGCTGCGGCGAATCGCCGGAGGAAAGCGAAATGCCCGCGGCGCAGGAAGAGCGCAGCAGCCGCTCAGGGTTCATCGGATGCGGCCAAAGAGTTCAGCGTCGACCGCGACCTTCCGGATGATGTGGAGAAAAAGGAAGAGGAGAGCATGGATGATGATGTTGTAGAAGAAGAAGAGTGTCCATTTGTGGATGATCCAAAAGATGAAAACTACCTTCCCCTTTCACATAGTGAGGAAGACGCCATCACCAGTGATGAAGATGTCCCGTTTACTGATGACGCGAATGACCAGAGCTATGATCCTAAGTATGAgaaGGAAATTCCTAAGTCGAGGCGCAGACCCCCTACTAGACTGACGGAGAAGAAAGACAAGGCTGCGACGCAAGAGACTGCAACAGAGCAAGAGGCAGAGATCAAAACCGAAGGAGGGGAGAGCACAGACGTGCAGACCGCTGCTGAAGTTGAGGAAGGTGCCGAGCCACCCAGGAAAAGAGGGCGAAGAAGGAAAGATGATAAAAGCCCTCGTCTTCCTAAAAGAAGGAAAAAGCCGCCGGTGCAGTATGTGCGTTGTGAAATGGAAGGATGTGGAACAGTGCTGGCTCATCCACGTTACTTACAGCATCACATTAAATACCAGCACCTGATGAAGAAGAAGTACGTCTGCCCTCATCCCTCATGCGGACGACTCTTTCGGCTGCAAAAACAACTACTGCGGCATGCCAAGCACCACACCGATCAGAGAGACTATATCTGTGAGTTCTGTGCTCGCGCCTTCAAGAGCTCTCACAACCTTGCTGTGCACCGAATGAtacacaccggagagaaaccacTGCAGTGTGAAATCTGTGGTTTCACTTGCCGTCAGAAGGCCTCCCTTAACTGGCACATGAAGAAGCACGATGCAGATGCCACGTACCAGTTCTCCTGCAGCATCTGCGGTAAGAAGTTCGAAAAGAAGGACAGTGTGGTGGCCCACAAAGCCAAGAGCCACCCCGAGGTGCTCATTGCAGAGGCCCTGGCCGCCAACGCCGGAGCCCTCATCACCACTCCCACCGGAGTCACCTCGCTGCTGGAGACCTCCACGGGCTCCATGCAGACAGAGCAGGTGGTCCCTGAGGCCCAGGGGAGTTCTGCCATGCCGGCGGGTCAGGTGGGGCCAGTGATGGTCGTGGATCAAGACCACCCACTACACACCATGCAGGTACCGGTGACCCTGGCCTTGTCCTCGACAGAAGAGGAAAACAGCGCTCCTTCACAGCAGACCTCCGCTCACTCTCTGCAGATGCCGCTACAGTTCGTCTCGACGCAGCATCAGCACCAAATTCAGCAGCTACCCGTTCAGCCCTCCACGACCAACGTCTCCCAGCAGGCCGCTTTGGTCCAGCAGCTGCCCGTTCAGCCCTACAGCCCTCAGTCCCAGATCGTCCACATGGCCTTCAGAGCTCTTCCTCAGCAGCAGCTCCCGCTAGTTTCTGTCGCACAGCAGCTGCCTCTTCAAAGCGCCCAGCCACATCAAAACCAGACCCTCTCGAGGCCCCCAAGCCACAATCCCGCTCCCAGTACTCCTCTTCTCACCCAAACCCTGCCCGAGGCGTCCGCCGGCTCCCGGGGCATTTTGGGATTCGGGGGCGACCCTGCCTCCTCCTCGTCTGCATCTCCCCAGTCTTCCATTACTCCTTCAGAGACGAGACAGGTGGTCTGGGAGGGAGACGGGACTAATGAGAACGGAAGTGGGGGTGGGGTTTGGGAGGCGGGCGGAGAAGGGGAGGGGCCAAACATGACGGACAGTTCAGAAGGCCAAATACAGCGCGTTCTGCTGTAGGGAAGGAAGGATATTGAAGGTGTACCATGGAAGACAGTGAGATGACTGTTATTTGTCACTCTCCTACACGCCCTGAAGTTAAATATATAGAgtcataaatatattgtatgtaatCGCATTAACATTTGGTAGCTTTGTAGATATGTCTGTACCAGGGAGACTGTGTTTTGAGTTGTCATTGTTCATTTTGTATATAAACAGTTATAGTCCCCTCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6551 lncRNA downstream 8945 19579564 ~ 19580861 (-) True G4607
TU6537 lncRNA downstream 36660 19552628 ~ 19553146 (-) True G4600
TU6534 lncRNA downstream 45446 19542976 ~ 19544360 (-) True G4597
TU6533 lncRNA downstream 48456 19540584 ~ 19541350 (-) True G4596
TU6525 lncRNA downstream 60555 19528751 ~ 19529251 (-) True G4590
TU6564 lncRNA upstream 1208 19598210 ~ 19603201 (-) False G4609
TU6565 lncRNA upstream 1208 19598210 ~ 19809631 (-) True G4609
TU6555 lncRNA upstream 2554 19599556 ~ 19603201 (-) False G4609
TU6568 lncRNA upstream 11381 19608383 ~ 19611515 (-) True G4611
TU6569 lncRNA upstream 11381 19608383 ~ 19611515 (-) False G4611
XM_043238431.1 mRNA downstream 11131 19575214 ~ 19578675 (-) False cntf
XM_043238362.1 mRNA downstream 11131 19575214 ~ 19578675 (-) True cntf
XM_043224890.1 mRNA downstream 18101 19554440 ~ 19571705 (-) False si:dkey-117m1.4
XM_043225589.1 mRNA downstream 18122 19554440 ~ 19571684 (-) True si:dkey-117m1.4
XM_043230490.1 mRNA downstream 50672 19535964 ~ 19539134 (-) False cdk2ap2
XM_043251230.1 mRNA upstream 14827 19611829 ~ 19624241 (-) True tesk1a
XM_043251226.1 mRNA upstream 68095 19665097 ~ 19757356 (-) True maml3
XM_043251231.1 mRNA upstream 180089 19777091 ~ 19785647 (-) True clgn
XM_043248486.1 mRNA upstream 281189 19878191 ~ 19879651 (-) True hmx4
XM_043249777.1 mRNA upstream 284123 19881125 ~ 19882724 (-) True hmx1
TU6528 other downstream 50660 19535972 ~ 19539146 (-) True cdk2ap2
XR_006250498.1 other downstream 1709389 17815824 ~ 17880417 (-) False znf827
XR_006251556.1 other downstream 3515886 16069177 ~ 16073920 (-) False alg11
TU5142 other downstream 4358920 15230539 ~ 15230886 (-) True G3571
TU5072 other downstream 4560186 15020642 ~ 15029620 (-) True G3515
unassigned_transcript_102 other upstream 499953 20096955 ~ 20097026 (-) True trnae-cuc_3
unassigned_transcript_104 other upstream 515748 20112750 ~ 20112821 (-) True trnam-cau
unassigned_transcript_105 other upstream 516140 20113142 ~ 20113213 (-) True trnae-cuc_4
TU6776 other upstream 540070 20137072 ~ 20139930 (-) False si:dkey-9i23.16
TU6779 other upstream 540070 20137072 ~ 20139930 (-) False si:dkey-9i23.16

Expression Profile